CuGenDBv2

Gene ID	Lag0025341
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	CCHC-type domain-containing protein
Genome location	chr10:11603805..11613774
RNA-Seq Expression	Lag0025341
Synteny	Lag0025341
Gene Ontology terms	NA
InterPro domains	IPR029472 - Retrotransposon Copia-like, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0049700.1 T4.5 [Cucumis melo var. makuwa]

2.6e-07

60.32

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Query:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDW
        R DSTN VLWK QL +ILKA+KL+GFIDG+ P P    RT  SSS   +S+V  Q NP YEDW
Subjt:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDW

KAE8645659.1 hypothetical protein Csa_020439 [Cucumis sativus]

2.0e-07

57.14

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Query:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDW
        R DSTN VLWK QL +ILKA+KLFGF+DG+ P P +S  TT        S+V  Q NP YEDW
Subjt:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDW

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]

2.6e-07

60.32

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Query:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDW
        R DSTN VLWK QL +ILKA+KL+GFIDG+ P P    RT  SSS   +S+V  Q NP YEDW
Subjt:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDW

XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]

2.6e-07

60.32

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Query:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDW
        R DSTN VLWK QL +ILKA+KL+GFIDG+ P P    RT  SSS   +S+V  Q NP YEDW
Subjt:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDW

XP_011658579.1 uncharacterized protein LOC105436058 [Cucumis sativus]

2.0e-07

57.14

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Query:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDW
        R DSTN VLWK QL +ILKA+KLFGF+DG+ P P +S  TT        S+V  Q NP YEDW
Subjt:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDW

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BI58 uncharacterized protein LOC103490319 isoform X2

1.2e-07

60.32

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Query:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDW
        R DSTN VLWK QL +ILKA+KL+GFIDG+ P P    RT  SSS   +S+V  Q NP YEDW
Subjt:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDW

A0A1S3BIR3 uncharacterized protein LOC103490319 isoform X3

1.2e-07

60.32

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Query:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDW
        R DSTN VLWK QL +ILKA+KL+GFIDG+ P P    RT  SSS   +S+V  Q NP YEDW
Subjt:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDW

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X1

1.2e-07

60.32

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Query:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDW
        R DSTN VLWK QL +ILKA+KL+GFIDG+ P P    RT  SSS   +S+V  Q NP YEDW
Subjt:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDW

A0A5D3CLI6 T4.5

1.2e-07

60.32

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Query:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDW
        R DSTN VLWK QL +ILKA+KL+GFIDG+ P P    RT  SSS   +S+V  Q NP YEDW
Subjt:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDW

A0A5D3D3T6 Retrotran_gag_3 domain-containing protein

1.1e-06

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Query:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSS-----TDSSSVVSQPNPQYEDW
        R DSTN  LWK Q   +LKA+KL+GFID S P P  ++   T++SS     T SSS     NP YEDW
Subjt:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSS-----TDSSSVVSQPNPQYEDW

SwissProt top hits

e value

%identity

Alignment

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

6.2e-04

33.33

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Query:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDWHRQ
        +  STN ++W  Q+ ++   Y+L GF+DGS P P +++ T            V + NP Y  W RQ
Subjt:  RFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDWHRQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

8.2e-04

56.25

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Query:  DSTNSVLWKHQLRSILKAYKLFGFIDGSFPKP
        D  N V WK + RS L+  K FGFIDG+ PKP
Subjt:  DSTNSVLWKHQLRSILKAYKLFGFIDGSFPKP

Sequences

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CDS sequence

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ATGGTGGTGTTATTCGTTGTTGCAGAGCAATCAAGAATCATTCTTGAAGTATTCAGAGTCGTCAACGTCGAATGTATTGCTGAGCGACTGGAGGGAGCAAATTTTGTGCT
GGAGCAAAGCGAGGAGCAAAAACTGCCACGTCACAACTCGTTAGCCAATGTAACAAACCGAATTCTGTTAAGTTATTCTCGGGATAAAGAGCAAAGAGAGTCATCCACGT
GTCTAGGTCAACCTAATTCAAGCCTTCCTCAACTCTATAAAAGGAGACGGCCGCCCAAGTCAAAGGCATTCCACTTTTGGGGAAGAGATCATTCTCATTTCCATTTTGGG
AGCCGAATAGAGGAGAGATTGGAGACCACCAAGAAGACCATCAATTACAAGCTGTTCAAGGGAATTAATCTTTTATTGTATTACCTTGTAGTTATGGACATGCTTACTCA
GATTGTAACGTCGGAGAATAGTAGAGAAGACTTTTTGGTGGTCCTTACCGTGTTTGTGAATCATTCAAGATCGAGGATTGTTGTTCTTCGTTCTTCGAAGGTCTTGAACA
AGGGGCCCCACCCTCTCATTGGCCCGAGAGGGACTTGGTTTAGTGGTAGAACCACAAACCAATTGTTCATAAGAGGACCAGTGGGACTTAAGGAACAAGATGTAATTTTA
GAGAGGATCCCACAATCTGTTCCAAGGCCTGAGAATAGCAAGGAAGATCCAAGTGATGGTCCTAGATCCATTGGTGTGAAGAAACAACAGAAGAATTGCGTGAATTGGGA
GCTACAAGAGCCCTCCATAGTTCACCATCTCTCTCCCTCCATTTGTCGGGTGCCACCCAGAGATCTCGTCGTTGGCAACCTGTCGCCAGTAGCAACCAGTTGTCCGCACA
CGCTGGAGACGCGTCGCCTATTACCCACCGCAAGCCACTGCGAAGAAAAACACGGAATAGAGCCATTGTCGCTGTCGTTTAGCTCGATTCTAACCCATGCACCGCCGCTG
CCATCGAGGGTCAATTGCAACAGCCGATTGTCACGTTTTGGGTGTCGATTTGATTCTACAAATTCTGTTCTATGGAAGCATCAGTTGCGATCAATCTTGAAGGCGTACAA
ATTGTTTGGATTCATTGATGGATCCTTTCCGAAACCGGCTTCATCTGTACGTACTACCACTTCTTCTTCGTCTACTGATTCTTCATCTGTTGTTTCTCAGCCGAATCCAC
AGTATGAGGACTGGCATCGCCAAAGATCACGCACTACAAACTCTGATTAA

mRNA sequence

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Protein sequence

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MVVLFVVAEQSRIILEVFRVVNVECIAERLEGANFVLEQSEEQKLPRHNSLANVTNRILLSYSRDKEQRESSTCLGQPNSSLPQLYKRRRPPKSKAFHFWGRDHSHFHFG
SRIEERLETTKKTINYKLFKGINLLLYYLVVMDMLTQIVTSENSREDFLVVLTVFVNHSRSRIVVLRSSKVLNKGPHPLIGPRGTWFSGRTTNQLFIRGPVGLKEQDVIL
ERIPQSVPRPENSKEDPSDGPRSIGVKKQQKNCVNWELQEPSIVHHLSPSICRVPPRDLVVGNLSPVATSCPHTLETRRLLPTASHCEEKHGIEPLSLSFSSILTHAPPL
PSRVNCNSRLSRFGCRFDSTNSVLWKHQLRSILKAYKLFGFIDGSFPKPASSVRTTTSSSSTDSSSVVSQPNPQYEDWHRQRSRTTNSD

Lag0025341 (gene) of Sponge gourd (AG-4) v1 genome