; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0025343 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025343
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRegulator of nonsense transcripts UPF3 isoform X1
Genome locationchr10:11649163..11654514
RNA-Seq ExpressionLag0025343
SyntenyLag0025343
Gene Ontology termsGO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (biological process)
GO:0045727 - positive regulation of translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR005120 - UPF3 domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR039722 - Nonsense-mediated mRNA decay protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039239.1 regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo var. makuwa]9.1e-1468.66Show/hide
Query:  EIWGFNKAKRELGIPRFV------------QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
        EIW F  A R+LGI R V            QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEK +
Subjt:  EIWGFNKAKRELGIPRFV------------QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
TYK00427.1 regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo var. makuwa]9.1e-1468.66Show/hide
Query:  EIWGFNKAKRELGIPRFV------------QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
        EIW F  A R+LGI R V            QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEK +
Subjt:  EIWGFNKAKRELGIPRFV------------QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
XP_004141560.1 regulator of nonsense transcripts UPF3 isoform X2 [Cucumis sativus]1.6e-1094.59Show/hide
Query:  QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
        QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEK +
Subjt:  QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
XP_008459659.1 PREDICTED: regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo]1.6e-1094.59Show/hide
Query:  QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
        QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEK +
Subjt:  QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
XP_016902430.1 PREDICTED: regulator of nonsense transcripts UPF3 isoform X3 [Cucumis melo]1.6e-1094.59Show/hide
Query:  QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
        QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEK +
Subjt:  QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
TrEMBL top hitse value%identityAlignment
A0A0A0KSY5 Smg4_UPF3 domain-containing protein7.8e-1194.59Show/hide
Query:  QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
        QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEK +
Subjt:  QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
A0A5A7TD91 Regulator of nonsense transcripts UPF3 isoform X14.4e-1468.66Show/hide
Query:  EIWGFNKAKRELGIPRFV------------QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
        EIW F  A R+LGI R V            QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEK +
Subjt:  EIWGFNKAKRELGIPRFV------------QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
A0A5D3BML0 Regulator of nonsense transcripts UPF3 isoform X14.4e-1468.66Show/hide
Query:  EIWGFNKAKRELGIPRFV------------QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
        EIW F  A R+LGI R V            QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEK +
Subjt:  EIWGFNKAKRELGIPRFV------------QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
A0A6J1EI29 regulator of nonsense transcripts UPF3-like7.8e-1194.59Show/hide
Query:  QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
        QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEK +
Subjt:  QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
A0A6J1IG63 regulator of nonsense transcripts UPF3-like7.8e-1194.59Show/hide
Query:  QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
        QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEK +
Subjt:  QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
SwissProt top hitse value%identityAlignment
Q9FVW4 Regulator of nonsense transcripts UPF31.0e-0766.67Show/hide
Query:  KDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
        K+Q+Y+RAY+ F  PEDV+EFA FF+GHVFVNEK +
Subjt:  KDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
Arabidopsis top hitse value%identityAlignment
AT1G33980.1 Smg-4/UPF3 family protein7.2e-0966.67Show/hide
Query:  KDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
        K+Q+Y+RAY+ F  PEDV+EFA FF+GHVFVNEK +
Subjt:  KDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
AT1G33980.2 Smg-4/UPF3 family protein3.2e-0960.47Show/hide
Query:  GIPRFVQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS
        G  R   K+Q+Y+RAY+ F  PEDV+EFA FF+GHVFVNEK +
Subjt:  GIPRFVQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKAS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGGCCTCGGCCCAAGCGAGGCCGAGTCTGTTTGCCTCCGCTCGGCCCCTACCGCTTCCAACTGCCTCGGTCCAGCCTGCTTCGTCCCAGAACGCCTCCAAACCCT
AGGAGTCCGAGCAGGTATTTATACCCCTCTTCGCCATCGAAGAAGGGGGCCGGAAAACTCTATTCTTGACTTCTTTCTCTACTCTCTAGCTGCTCAGTTTCTTGACTTAG
GCATCGGAGGCGGTGTGGCCTACACCACACCGGTGTCTAGCGATTCTTGCTGGTCTTGTAGGTCACGTCTTCCCCAGCTTCTACAAATTCACTGTCGATGTCACGTGAAG
GCCAGGGAATTTTGGGTGAGGGAGGAGGGCCTCCCTCCCTTTCCGGCGCCGGCGACGGGAGGAGGGAGGAGGGCACTTTCAGAAATCTGGGGGTTCAATAAGGCCAAGCG
CGAACTGGGTATTCCTCGTTTTGTTCAGAAGGACCAGAGGTACGCTCGAGCCTACATAGATTTTACGAGACCTGAAGATGTTTTTGAGTTTGCGGAGTTCTTTGATGGCC
ATGTTTTTGTTAACGAGAAGGCCTCTATTTCTGGAGTTTCTGGCACCATCCAAAATGGCTGGACTTTGGCTACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGGCCTCGGCCCAAGCGAGGCCGAGTCTGTTTGCCTCCGCTCGGCCCCTACCGCTTCCAACTGCCTCGGTCCAGCCTGCTTCGTCCCAGAACGCCTCCAAACCCT
AGGAGTCCGAGCAGGTATTTATACCCCTCTTCGCCATCGAAGAAGGGGGCCGGAAAACTCTATTCTTGACTTCTTTCTCTACTCTCTAGCTGCTCAGTTTCTTGACTTAG
GCATCGGAGGCGGTGTGGCCTACACCACACCGGTGTCTAGCGATTCTTGCTGGTCTTGTAGGTCACGTCTTCCCCAGCTTCTACAAATTCACTGTCGATGTCACGTGAAG
GCCAGGGAATTTTGGGTGAGGGAGGAGGGCCTCCCTCCCTTTCCGGCGCCGGCGACGGGAGGAGGGAGGAGGGCACTTTCAGAAATCTGGGGGTTCAATAAGGCCAAGCG
CGAACTGGGTATTCCTCGTTTTGTTCAGAAGGACCAGAGGTACGCTCGAGCCTACATAGATTTTACGAGACCTGAAGATGTTTTTGAGTTTGCGGAGTTCTTTGATGGCC
ATGTTTTTGTTAACGAGAAGGCCTCTATTTCTGGAGTTTCTGGCACCATCCAAAATGGCTGGACTTTGGCTACTTGA
Protein sequenceShow/hide protein sequence
MVGLGPSEAESVCLRSAPTASNCLGPACFVPERLQTLGVRAGIYTPLRHRRRGPENSILDFFLYSLAAQFLDLGIGGGVAYTTPVSSDSCWSCRSRLPQLLQIHCRCHVK
AREFWVREEGLPPFPAPATGGGRRALSEIWGFNKAKRELGIPRFVQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKASISGVSGTIQNGWTLAT