CuGenDBv2

Gene ID	Lag0025366
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	ribonuclease H2 subunit C
Genome location	chr10:11888817..11891536
RNA-Seq Expression	Lag0025366
Synteny	Lag0025366
Gene Ontology terms	GO:0006401 - RNA catabolic process (biological process) GO:0032299 - ribonuclease H2 complex (cellular component)
InterPro domains	IPR013924 - Ribonuclease H2, subunit C

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6583796.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]

7.9e-77

85.54

Show/hide

Query:  MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS
        MD+ENER+RE+ VDF+FG DS AVDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDGLSVE AYFRGRKLQGATISLPEGYSGYV+GRKS GKRKAS
Subjt:  MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS

Query:  EQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS
        E+S+DSS WQVKAKF NITYWNH TLP+QDDTF+RSFHWL VAQALH+PVTAEDLA+AS A KNMS
Subjt:  EQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS

XP_022927160.1 uncharacterized protein C12B10.15c [Cucurbita moschata]

3.9e-76

84.94

Show/hide

Query:  MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS
        MD+E ER+RE+ VDF+FG DS AVDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDGLSVE AYFRGRKLQGATISLPEGYSGYV+GRKS GKRKAS
Subjt:  MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS

Query:  EQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS
        E+S+DSS WQVKAKF NITYWNH TLP+QDDTF+RSFHWL VAQALH+PVTAEDLA+AS A KNMS
Subjt:  EQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS

XP_023001622.1 uncharacterized protein C12B10.15c [Cucurbita maxima]

1.5e-75

84.34

Show/hide

Query:  MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS
        MD+E ER+RE+ VDF+FG DS AVDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDGLSV+ AYFRGRKLQGATISLPEGY GYV+GRKSL KRKAS
Subjt:  MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS

Query:  EQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS
        E+S+DSS WQVKAKF NITYWNH TLP+QDDTF+RSFHWL VAQALH+PVTAEDLA ASTA KNMS
Subjt:  EQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS

XP_023519278.1 uncharacterized protein C12B10.15c [Cucurbita pepo subsp. pepo]

1.9e-75

84.34

Show/hide

Query:  MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS
        MD+E+ER+RE+ VDF+FG DS  VDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDGLSVE AYFRGRKLQGATISLPEGYSGYV+GRKS GKRKAS
Subjt:  MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS

Query:  EQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS
        E+S+DSS WQVKAKF NITYWNH TLP+QDDTF RSFHWL VAQALH+P TAEDLA+ASTA KNMS
Subjt:  EQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS

XP_038893586.1 uncharacterized protein C12B10.15c [Benincasa hispida]

5.5e-78

87.35

Show/hide

Query:  MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS
        M+AENER+ E+ VDF+F  DSVA+DLSGKVHQLPCAIKFDGPCSVSQYFKPKSTG+E DGLSVEEAYFRGRKLQGATISLPEGYSGYVLG+KSLGKRKAS
Subjt:  MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS

Query:  EQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS
        EQ ++SSPWQVKAKF NITYWNH TLPSQDDTF+RSFHWL VAQALH+PVTAEDLASASTA KNMS
Subjt:  EQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C9A8 uncharacterized protein C12B10.15c

7.0e-71

79.17

Show/hide

Query:  MDAENEREREITV--DFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRK
        M+A+N R+ E TV  DF+FG D  A+DLSGK+HQLPC IKFDGPC VS YFKPKSTG+EVDGL+VEEAYFRGRKLQGATISLPEGYSGYVLG+KSLGK K
Subjt:  MDAENEREREITV--DFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRK

Query:  ASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS
        +S+Q  DSSPWQVKAKF NITYWNH TLPSQDDTF+R+FHWL VAQALH+PVTAEDLASAS A  N+S
Subjt:  ASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS

A0A5A7TIT8 Ribonuclease H2 subunit C isoform X2

7.0e-71

79.17

Show/hide

Query:  MDAENEREREITV--DFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRK
        M+A+N R+ E TV  DF+FG D  A+DLSGK+HQLPC IKFDGPC VS YFKPKSTG+EVDGL+VEEAYFRGRKLQGATISLPEGYSGYVLG+KSLGK K
Subjt:  MDAENEREREITV--DFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRK

Query:  ASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS
        +S+Q  DSSPWQVKAKF NITYWNH TLPSQDDTF+R+FHWL VAQALH+PVTAEDLASAS A  N+S
Subjt:  ASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS

A0A6J1CLH6 ribonuclease H2 subunit C

1.2e-75

85.54

Show/hide

Query:  MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS
        MDAENER+RE+ VD + GRDS AVDLSGKVHQLPC +K DGPCSVS YFKPK TG+EVDGLSVEEAYFRGRKLQGATISLPEGYSG+VLGRK LGKRKAS
Subjt:  MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS

Query:  EQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS
        EQS+DS  W+VKAKFGNITYWNH TLPSQDD FRRSFHWL VAQALHQPVTAEDLASASTA K+MS
Subjt:  EQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS

A0A6J1EN41 uncharacterized protein C12B10.15c

1.9e-76

84.94

Show/hide

Query:  MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS
        MD+E ER+RE+ VDF+FG DS AVDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDGLSVE AYFRGRKLQGATISLPEGYSGYV+GRKS GKRKAS
Subjt:  MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS

Query:  EQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS
        E+S+DSS WQVKAKF NITYWNH TLP+QDDTF+RSFHWL VAQALH+PVTAEDLA+AS A KNMS
Subjt:  EQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS

A0A6J1KH29 uncharacterized protein C12B10.15c

7.2e-76

84.34

Show/hide

Query:  MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS
        MD+E ER+RE+ VDF+FG DS AVDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDGLSV+ AYFRGRKLQGATISLPEGY GYV+GRKSL KRKAS
Subjt:  MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKAS

Query:  EQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS
        E+S+DSS WQVKAKF NITYWNH TLP+QDDTF+RSFHWL VAQALH+PVTAEDLA ASTA KNMS
Subjt:  EQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS

SwissProt top hits

e value

%identity

Alignment

Q10448 Uncharacterized protein C12B10.15c

2.1e-08

32.2

Show/hide

Query:  KVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSG-YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTL-
        K   LPC I +DGP  V +YF  K   +  +  S      RGR+L G  + LPE Y+G  VL    L   + SE+    S W + + F  +  WN   + 
Subjt:  KVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSG-YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTL-

Query:  PSQDDTFRRS-FHWLAVA
         S+ D ++R    W+  A
Subjt:  PSQDDTFRRS-FHWLAVA

Arabidopsis top hits

e value

%identity

Alignment

AT2G39440.1 CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

1.4e-52

62.03

Show/hide

Query:  TVDFEFGRD-SVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKS----LGKRKASEQSKDS
        T+DF    D +  VDLS +VHQLPC I+FDGP  VS YFKPKS+ VE+DG+  EEA+FRGRKLQGATISLP GYSG+VL + S     GKRKAS  ++D+
Subjt:  TVDFEFGRD-SVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKS----LGKRKASEQSKDS

Query:  SPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKN
          W+VKAKF N+TYWNH +LPS+DDTF RSFHW ++A+ALH+PV  EDL + S   KN
Subjt:  SPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATGCTGAAAACGAGAGAGAAAGGGAAATAACGGTGGATTTTGAGTTTGGGAGGGACTCTGTAGCTGTCGATCTCAGCGGCAAAGTCCATCAGCTTCCCTGTGCCAT
TAAATTCGATGGTCCTTGCTCTGTTTCCCAGTATTTCAAACCCAAATCCACTGGAGTTGAGGTTGATGGTTTGAGCGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTGC
AGGGAGCTACCATTTCCCTTCCAGAAGGTTACTCTGGCTATGTGTTGGGTAGGAAAAGTCTTGGCAAGAGAAAAGCTTCTGAACAGTCCAAGGACTCAAGCCCTTGGCAG
GTGAAGGCCAAATTTGGAAACATTACATATTGGAACCATGGCACTCTGCCTTCACAAGATGATACGTTTCGGCGTTCTTTTCACTGGCTTGCTGTTGCACAAGCATTGCA
CCAACCGGTGACAGCAGAAGACTTGGCATCTGCATCTACTGCTCCCAAGAACATGAGTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKASEQSKDSSPWQ
VKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS

Lag0025366 (gene) of Sponge gourd (AG-4) v1 genome