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Lag0025384 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025384
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA polymerase zeta catalytic subunit-like
Genome locationchr10:12091669..12092985
RNA-Seq ExpressionLag0025384
SyntenyLag0025384
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2595479.1 DNA polymerase zeta catalytic subunit-like [Pyrus ussuriensis x Pyrus communis]5.5e-0446.43Show/hide
Query:  IRGVCWVCGKSGHITADCRHKKGQN--SNNQVNIVENDDLEHDKELLRYYTLISVG
        I+G CWVCGK+GH   DC HKK QN  S+NQ N+ E+  +  D+ L   Y  +  G
Subjt:  IRGVCWVCGKSGHITADCRHKKGQN--SNNQVNIVENDDLEHDKELLRYYTLISVG

XP_022148559.1 uncharacterized protein LOC111017193 [Momordica charantia]2.7e-1166.67Show/hide
Query:  KKQQFKKNNVNLHPRNDANKRIIRGVCWVCGKSGHITADCRHKKGQNSNNQVNIVENDDL
        KK Q K  N    PRNDANKR IR +CWVCGKSGHI A+ RHKKGQ+SNNQ N +E+D+L
Subjt:  KKQQFKKNNVNLHPRNDANKRIIRGVCWVCGKSGHITADCRHKKGQNSNNQVNIVENDDL

XP_022150041.1 uncharacterized protein LOC111018314 [Momordica charantia]1.9e-1276Show/hide
Query:  KKQQFKKNNVNLHPRNDANKRIIRGVCWVCGKSGHITADCRHKKGQNSNN
        KK Q K  NVNL PRNDANKR IR +CWVCG SGHI A+CRHKKGQ+SNN
Subjt:  KKQQFKKNNVNLHPRNDANKRIIRGVCWVCGKSGHITADCRHKKGQNSNN

XP_022152118.1 uncharacterized protein LOC111019908 [Momordica charantia]2.5e-1271.67Show/hide
Query:  KKQQFKKNNVNLHPRNDANKRIIRGVCWVCGKSGHITADCRHKKGQNSNNQVNIVENDDL
        KKQ  K  NVNL  RNDANKR IRG+  VCGKSGHI A+ RHKKGQ+SNNQ NIVE+D+L
Subjt:  KKQQFKKNNVNLHPRNDANKRIIRGVCWVCGKSGHITADCRHKKGQNSNNQVNIVENDDL

XP_022155402.1 uncharacterized protein LOC111022547 [Momordica charantia]1.5e-1470Show/hide
Query:  KKQQFKKNNVNLHPRNDANKRIIRGVCWVCGKSGHITADCRHKKGQNSNNQVNIVENDDL
        KK QFK  NVNL PRN+ANKR IR + WVCGKS HI A+CRHKKGQNSNN+ N +E+D+L
Subjt:  KKQQFKKNNVNLHPRNDANKRIIRGVCWVCGKSGHITADCRHKKGQNSNNQVNIVENDDL

TrEMBL top hitse value%identityAlignment
A0A5N5EX12 DNA polymerase zeta catalytic subunit-like2.7e-0446.43Show/hide
Query:  IRGVCWVCGKSGHITADCRHKKGQN--SNNQVNIVENDDLEHDKELLRYYTLISVG
        I+G CWVCGK+GH   DC HKK QN  S+NQ N+ E+  +  D+ L   Y  +  G
Subjt:  IRGVCWVCGKSGHITADCRHKKGQN--SNNQVNIVENDDLEHDKELLRYYTLISVG

A0A6J1D4C8 uncharacterized protein LOC1110171931.3e-1166.67Show/hide
Query:  KKQQFKKNNVNLHPRNDANKRIIRGVCWVCGKSGHITADCRHKKGQNSNNQVNIVENDDL
        KK Q K  N    PRNDANKR IR +CWVCGKSGHI A+ RHKKGQ+SNNQ N +E+D+L
Subjt:  KKQQFKKNNVNLHPRNDANKRIIRGVCWVCGKSGHITADCRHKKGQNSNNQVNIVENDDL

A0A6J1DA93 uncharacterized protein LOC1110183149.1e-1376Show/hide
Query:  KKQQFKKNNVNLHPRNDANKRIIRGVCWVCGKSGHITADCRHKKGQNSNN
        KK Q K  NVNL PRNDANKR IR +CWVCG SGHI A+CRHKKGQ+SNN
Subjt:  KKQQFKKNNVNLHPRNDANKRIIRGVCWVCGKSGHITADCRHKKGQNSNN

A0A6J1DE03 uncharacterized protein LOC1110199081.2e-1271.67Show/hide
Query:  KKQQFKKNNVNLHPRNDANKRIIRGVCWVCGKSGHITADCRHKKGQNSNNQVNIVENDDL
        KKQ  K  NVNL  RNDANKR IRG+  VCGKSGHI A+ RHKKGQ+SNNQ NIVE+D+L
Subjt:  KKQQFKKNNVNLHPRNDANKRIIRGVCWVCGKSGHITADCRHKKGQNSNNQVNIVENDDL

A0A6J1DP87 uncharacterized protein LOC1110225477.5e-1570Show/hide
Query:  KKQQFKKNNVNLHPRNDANKRIIRGVCWVCGKSGHITADCRHKKGQNSNNQVNIVENDDL
        KK QFK  NVNL PRN+ANKR IR + WVCGKS HI A+CRHKKGQNSNN+ N +E+D+L
Subjt:  KKQQFKKNNVNLHPRNDANKRIIRGVCWVCGKSGHITADCRHKKGQNSNNQVNIVENDDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACTTCCGCTGCGTGGGGACTTTTATTCCCTTCACCAAGAAGCAACAATTCAAGAAGAATAATGTGAATCTTCACCCGAGGAATGATGCCAATAAGCGCATTATTCG
TGGAGTTTGTTGGGTTTGTGGTAAGAGTGGCCATATTACTGCTGATTGTAGACACAAGAAGGGACAAAACTCCAACAATCAGGTCAATATTGTGGAGAATGATGATCTAG
AACATGACAAAGAATTGCTTAGATATTACACATTGATCTCAGTTGGCTCAGAACCTGAAGAGAAACGCTCTCGAGTCCTATGTAACAGGTTAAGACAGTTGACGAGGGGA
ACTGCATTTAGCCAATTGGAATTCGATGATATAAGAGTTGAATTATGTGAATATGTAGCACAATACATGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCACTTCCGCTGCGTGGGGACTTTTATTCCCTTCACCAAGAAGCAACAATTCAAGAAGAATAATGTGAATCTTCACCCGAGGAATGATGCCAATAAGCGCATTATTCG
TGGAGTTTGTTGGGTTTGTGGTAAGAGTGGCCATATTACTGCTGATTGTAGACACAAGAAGGGACAAAACTCCAACAATCAGGTCAATATTGTGGAGAATGATGATCTAG
AACATGACAAAGAATTGCTTAGATATTACACATTGATCTCAGTTGGCTCAGAACCTGAAGAGAAACGCTCTCGAGTCCTATGTAACAGGTTAAGACAGTTGACGAGGGGA
ACTGCATTTAGCCAATTGGAATTCGATGATATAAGAGTTGAATTATGTGAATATGTAGCACAATACATGGGATGA
Protein sequenceShow/hide protein sequence
MHFRCVGTFIPFTKKQQFKKNNVNLHPRNDANKRIIRGVCWVCGKSGHITADCRHKKGQNSNNQVNIVENDDLEHDKELLRYYTLISVGSEPEEKRSRVLCNRLRQLTRG
TAFSQLEFDDIRVELCEYVAQYMG