; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0025425 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025425
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSuccinate--CoA ligase [ADP-forming] subunit beta, mitochondrial
Genome locationchr10:12796370..12804411
RNA-Seq ExpressionLag0025425
SyntenyLag0025425
Gene Ontology termsGO:0006099 - tricarboxylic acid cycle (biological process)
GO:0006104 - succinyl-CoA metabolic process (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0042709 - succinate-CoA ligase complex (cellular component)
GO:0004776 - succinate-CoA ligase (GDP-forming) activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR005809 - Succinate--CoA synthetase, beta subunit
IPR013650 - ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 - ATP-grasp fold, subdomain 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157524.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [Momordica charantia]9.5e-3570.73Show/hide
Query:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA
        G+ELM+KYGINV KGV VSSVDEAKNAV+T FPDAKE                          LV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVEE+A
Subjt:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA

Query:  GKMLGQILVTKQTGPQGKVVSKL
        GKMLGQILVTKQTGPQGKVVSK+
Subjt:  GKMLGQILVTKQTGPQGKVVSKL

XP_022157525.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X2 [Momordica charantia]9.5e-3570.73Show/hide
Query:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA
        G+ELM+KYGINV KGV VSSVDEAKNAV+T FPDAKE                          LV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVEE+A
Subjt:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA

Query:  GKMLGQILVTKQTGPQGKVVSKL
        GKMLGQILVTKQTGPQGKVVSK+
Subjt:  GKMLGQILVTKQTGPQGKVVSKL

XP_022959857.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Cucurbita moschata]3.9e-3672.36Show/hide
Query:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA
        GAELMNKYGINV KG+ VSSVDEAKNAVQT FPDAKE                          LV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVE+YA
Subjt:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA

Query:  GKMLGQILVTKQTGPQGKVVSKL
        GKMLGQILVTKQTGPQGKVVSK+
Subjt:  GKMLGQILVTKQTGPQGKVVSKL

XP_023005021.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Cucurbita maxima]2.3e-3662.42Show/hide
Query:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA
        GAELMNKYGINV KG+ VSSVDEAKNAVQT FPDAKE                          LV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVE+YA
Subjt:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA

Query:  GKMLGQILVTKQTGPQGKVVSKL----DVSRIRLMYNVCMGDKSRKPPHSNSLSLAC
        GKMLGQILVTKQTGPQGKVVSK+     +S I  MY     D+    P    L +AC
Subjt:  GKMLGQILVTKQTGPQGKVVSKL----DVSRIRLMYNVCMGDKSRKPPHSNSLSLAC

XP_038876130.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Benincasa hispida]1.1e-3561.78Show/hide
Query:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA
        GAELMNKYGINV KG+ VSSV+EAKNA+QTVFPDAKE                          LV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVEE A
Subjt:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA

Query:  GKMLGQILVTKQTGPQGKVVSKL----DVSRIRLMYNVCMGDKSRKPPHSNSLSLAC
        GKMLGQILVTKQTGPQGKVVSK+     +S I  MY     D+    P    L +AC
Subjt:  GKMLGQILVTKQTGPQGKVVSKL----DVSRIRLMYNVCMGDKSRKPPHSNSLSLAC

TrEMBL top hitse value%identityAlignment
A0A5D3DLZ9 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial1.3e-3460.51Show/hide
Query:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA
        GAELM+KYGINV KG+ VSSVDE KNAV+T FPDAKE                          LV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVEE A
Subjt:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA

Query:  GKMLGQILVTKQTGPQGKVVSKL----DVSRIRLMYNVCMGDKSRKPPHSNSLSLAC
        GKMLGQILVTKQTGPQGKVVSK+     +S I  MY     D+    P    L +AC
Subjt:  GKMLGQILVTKQTGPQGKVVSKL----DVSRIRLMYNVCMGDKSRKPPHSNSLSLAC

A0A6J1DTC6 Succinate-CoA ligase subunit beta4.6e-3570.73Show/hide
Query:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA
        G+ELM+KYGINV KGV VSSVDEAKNAV+T FPDAKE                          LV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVEE+A
Subjt:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA

Query:  GKMLGQILVTKQTGPQGKVVSKL
        GKMLGQILVTKQTGPQGKVVSK+
Subjt:  GKMLGQILVTKQTGPQGKVVSKL

A0A6J1DWQ4 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial4.6e-3570.73Show/hide
Query:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA
        G+ELM+KYGINV KGV VSSVDEAKNAV+T FPDAKE                          LV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVEE+A
Subjt:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA

Query:  GKMLGQILVTKQTGPQGKVVSKL
        GKMLGQILVTKQTGPQGKVVSK+
Subjt:  GKMLGQILVTKQTGPQGKVVSKL

A0A6J1H5Q5 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial1.9e-3672.36Show/hide
Query:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA
        GAELMNKYGINV KG+ VSSVDEAKNAVQT FPDAKE                          LV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVE+YA
Subjt:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA

Query:  GKMLGQILVTKQTGPQGKVVSKL
        GKMLGQILVTKQTGPQGKVVSK+
Subjt:  GKMLGQILVTKQTGPQGKVVSKL

A0A6J1KTS5 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial1.1e-3662.42Show/hide
Query:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA
        GAELMNKYGINV KG+ VSSVDEAKNAVQT FPDAKE                          LV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVE+YA
Subjt:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA

Query:  GKMLGQILVTKQTGPQGKVVSKL----DVSRIRLMYNVCMGDKSRKPPHSNSLSLAC
        GKMLGQILVTKQTGPQGKVVSK+     +S I  MY     D+    P    L +AC
Subjt:  GKMLGQILVTKQTGPQGKVVSKL----DVSRIRLMYNVCMGDKSRKPPHSNSLSLAC

SwissProt top hitse value%identityAlignment
A0RPE8 Succinate--CoA ligase [ADP-forming] subunit beta2.4e-1239.68Show/hide
Query:  ELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVK-VDQVEEYAG
        EL+  +GINV+ G++V SVD+A NA +                            K       +K+QI AGGRGLG        GV I K +D+V+EYA 
Subjt:  ELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVK-VDQVEEYAG

Query:  KMLGQILVTKQTGPQGKVVSKLDVSR
        K+LG  LVTKQTGP+GK+V KL + +
Subjt:  KMLGQILVTKQTGPQGKVVSKLDVSR

B2UMH5 Succinate--CoA ligase [ADP-forming] subunit beta1.9e-1738.1Show/hide
Query:  ELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVK-VDQVEEYAG
        +L  ++G+   KG+  S+  EA    +                   N+G         + Q V+K+Q+ AGGRG GTFK+G K GVH+VK V++VEE AG
Subjt:  ELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVK-VDQVEEYAG

Query:  KMLGQILVTKQTGPQGKVVSKLDVSRI----RLMYNVCMGDKSRKPP
        KML Q+LVTKQTG  GK+VSK+ V+      +  Y   + D++R+ P
Subjt:  KMLGQILVTKQTGPQGKVVSKLDVSRI----RLMYNVCMGDKSRKPP

O82662 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial7.8e-3252.87Show/hide
Query:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA
        GAELM KYG+NV KGV  SS++E K A+Q VFP+  E                          LV+KSQILAGGRGLGTFKSGLK GVHIVK D+ EE A
Subjt:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA

Query:  GKMLGQILVTKQTGPQGKVVSKL----DVSRIRLMYNVCMGDKSRKPPHSNSLSLAC
        GKMLGQ+LVTKQTGPQGKVVSK+     +S +  MY   + D+    P    L +AC
Subjt:  GKMLGQILVTKQTGPQGKVVSKL----DVSRIRLMYNVCMGDKSRKPPHSNSLSLAC

Q6K9N6 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial1.3e-2949.37Show/hide
Query:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA
        GAELM KYGINV +G    SV+E KN ++ VFP  KE                          +V+KSQILAGGRGLGTFKSGL+ GVHIVK ++ E  A
Subjt:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA

Query:  GKMLGQILVTKQTGPQGKVVSKL----DVSRIRLMYNVCMGDKSRKPPHSNSLSLACS
         KMLGQILVTKQTGPQGK+VSK+     +S +  MY     D++   P    L +ACS
Subjt:  GKMLGQILVTKQTGPQGKVVSKL----DVSRIRLMYNVCMGDKSRKPPHSNSLSLACS

Q84LB6 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial7.3e-3050.32Show/hide
Query:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA
        GAELM+KYGINV KGV V+S+DE K A+Q VFP+  E                          +V+KSQ+LAGGRGLGTFK+G + GVHIVK DQ E+ A
Subjt:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA

Query:  GKMLGQILVTKQTGPQGKVVSKL----DVSRIRLMYNVCMGDKSRKPPHSNSLSLAC
         KMLGQILVTKQTG QGKVVSK+     +S +  MY   + D++   P    L +AC
Subjt:  GKMLGQILVTKQTGPQGKVVSKL----DVSRIRLMYNVCMGDKSRKPPHSNSLSLAC

Arabidopsis top hitse value%identityAlignment
AT2G20420.1 ATP citrate lyase (ACL) family protein5.6e-3352.87Show/hide
Query:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA
        GAELM KYG+NV KGV  SS++E K A+Q VFP+  E                          LV+KSQILAGGRGLGTFKSGLK GVHIVK D+ EE A
Subjt:  GAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYA

Query:  GKMLGQILVTKQTGPQGKVVSKL----DVSRIRLMYNVCMGDKSRKPPHSNSLSLAC
        GKMLGQ+LVTKQTGPQGKVVSK+     +S +  MY   + D+    P    L +AC
Subjt:  GKMLGQILVTKQTGPQGKVVSKL----DVSRIRLMYNVCMGDKSRKPPHSNSLSLAC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGCTGAGCTGATGAACAAATATGGGATCAATGTATCCAAGGGTGTTGTTGTTTCTTCTGTCGATGAAGCAAAAAACGCAGTCCAGACTGTTTTTCCTGATGCGAA
AGAGGACCTCGACATTTCCATCGACATCGACATTTTAAACCTTGGTTATGAGAAGCATTATACGAAATTTGATATCTTGCAGTTGGTCATTAAAAGTCAAATTTTAGCTG
GTGGAAGAGGTTTGGGGACATTCAAAAGTGGCTTAAAGGCTGGAGTTCACATTGTTAAGGTGGACCAGGTTGAAGAGTATGCTGGAAAGATGCTTGGGCAGATACTTGTC
ACTAAACAAACTGGTCCACAGGGCAAAGTTGTCAGCAAGCTGGATGTTTCAAGGATCAGACTGATGTACAATGTCTGCATGGGTGACAAAAGCCGCAAGCCGCCTCATTC
GAACTCCCTCTCTCTCGCGTGCTCCAGCCTCAGCCGACAGCCCTTTCTTCTTCCTCTTCGCGTGTCGGCAGTTGGGCGTTCCTCCTCCGGCGGTTGCTTCCGTCCGTTCG
TCCCCTCCGGTGGCGTTCGCGGCAGTGCAGCAGTGGCCTTCCGTTTTCAGCGGCGGCAGTACGTATTTCCTTTCGTAGTCGAGCGTGGTTGTGGTCGGGCAACGGTGTTA
TCCGGCAAGCAGTCTGTGAGGTGCGACCAGCATCTTTTGGGAGGCGTTCTCGGCGTTTTTTTCGGCGTTTCGTTCAGCGGGCGTTCTTTTTGTATCCGCGATTTGGGTGT
TGAATCTCCAAGTTTCAGCATCCTTAAGTGGGTTTCGTCATTCGGTGGTAATTGGAACCCGTACAGCAAGCGTGATTCTCTGTTTGGTTTGAAGTGCCTTTTAGCTTGTG
GTTGGGCAGTTTGGAACATAGGAGTGTTTATCTGCTTTTCAGAGCTCAGTTTCAGGCACGCTAGCGTGCACTCTCTCAGTTCAGACGGTGTTGAGCTTATGATCAGACAC
GTTGTTCGTGCACCAGTTGGCACCAGGCATGTTTACATGCGTCAGTTGCTCCACCGTATTTTTATGTTTACATTCAGGGGTGTTGTGTTGGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGGCTGAGCTGATGAACAAATATGGGATCAATGTATCCAAGGGTGTTGTTGTTTCTTCTGTCGATGAAGCAAAAAACGCAGTCCAGACTGTTTTTCCTGATGCGAA
AGAGGACCTCGACATTTCCATCGACATCGACATTTTAAACCTTGGTTATGAGAAGCATTATACGAAATTTGATATCTTGCAGTTGGTCATTAAAAGTCAAATTTTAGCTG
GTGGAAGAGGTTTGGGGACATTCAAAAGTGGCTTAAAGGCTGGAGTTCACATTGTTAAGGTGGACCAGGTTGAAGAGTATGCTGGAAAGATGCTTGGGCAGATACTTGTC
ACTAAACAAACTGGTCCACAGGGCAAAGTTGTCAGCAAGCTGGATGTTTCAAGGATCAGACTGATGTACAATGTCTGCATGGGTGACAAAAGCCGCAAGCCGCCTCATTC
GAACTCCCTCTCTCTCGCGTGCTCCAGCCTCAGCCGACAGCCCTTTCTTCTTCCTCTTCGCGTGTCGGCAGTTGGGCGTTCCTCCTCCGGCGGTTGCTTCCGTCCGTTCG
TCCCCTCCGGTGGCGTTCGCGGCAGTGCAGCAGTGGCCTTCCGTTTTCAGCGGCGGCAGTACGTATTTCCTTTCGTAGTCGAGCGTGGTTGTGGTCGGGCAACGGTGTTA
TCCGGCAAGCAGTCTGTGAGGTGCGACCAGCATCTTTTGGGAGGCGTTCTCGGCGTTTTTTTCGGCGTTTCGTTCAGCGGGCGTTCTTTTTGTATCCGCGATTTGGGTGT
TGAATCTCCAAGTTTCAGCATCCTTAAGTGGGTTTCGTCATTCGGTGGTAATTGGAACCCGTACAGCAAGCGTGATTCTCTGTTTGGTTTGAAGTGCCTTTTAGCTTGTG
GTTGGGCAGTTTGGAACATAGGAGTGTTTATCTGCTTTTCAGAGCTCAGTTTCAGGCACGCTAGCGTGCACTCTCTCAGTTCAGACGGTGTTGAGCTTATGATCAGACAC
GTTGTTCGTGCACCAGTTGGCACCAGGCATGTTTACATGCGTCAGTTGCTCCACCGTATTTTTATGTTTACATTCAGGGGTGTTGTGTTGGGATAG
Protein sequenceShow/hide protein sequence
MGAELMNKYGINVSKGVVVSSVDEAKNAVQTVFPDAKEDLDISIDIDILNLGYEKHYTKFDILQLVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILV
TKQTGPQGKVVSKLDVSRIRLMYNVCMGDKSRKPPHSNSLSLACSSLSRQPFLLPLRVSAVGRSSSGGCFRPFVPSGGVRGSAAVAFRFQRRQYVFPFVVERGCGRATVL
SGKQSVRCDQHLLGGVLGVFFGVSFSGRSFCIRDLGVESPSFSILKWVSSFGGNWNPYSKRDSLFGLKCLLACGWAVWNIGVFICFSELSFRHASVHSLSSDGVELMIRH
VVRAPVGTRHVYMRQLLHRIFMFTFRGVVLG