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Lag0025431 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025431
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr10:12897325..12901721
RNA-Seq ExpressionLag0025431
SyntenyLag0025431
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023876230.1 uncharacterized protein LOC111988681 [Quercus suber]1.9e-2137.95Show/hide
Query:  YLRMSAQSGRNNGVIFNHIKDG-GEKPSKARRISFSLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEI-------------DRPWISNKSTYKLNILN-
        YL + +  GR+    F  +K     K +  +    S  GKEVLIK+V QA+P YTMSCF+LP  +C+E+                W+ N  TY++     
Subjt:  YLRMSAQSGRNNGVIFNHIKDG-GEKPSKARRISFSLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEI-------------DRPWISNKSTYKLNILN-

Query:  EDLKGQRIKYLIDGNN-KWREDLICQNSSHQEAESILNIPLGDVKFKDEIIWHPNSKGSFTVKSAYRLAME-SSNLKEEAQSNNNKLVSLWKKLW
        + L+G ++  LIDGN  KW+E LI Q    Q+AE+IL+I L     +D +IW  N  G FTV+S Y+LA +  SN      SN   L  LW+ LW
Subjt:  EDLKGQRIKYLIDGNN-KWREDLICQNSSHQEAESILNIPLGDVKFKDEIIWHPNSKGSFTVKSAYRLAME-SSNLKEEAQSNNNKLVSLWKKLW

XP_023902041.1 uncharacterized protein LOC112013897 [Quercus suber]8.2e-1730Show/hide
Query:  DRRNCET--SLGIKRSVSLDYYLRMSAQSGRNNGVIFNHIKDGGE-KPSKARRISFSLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEIDR--------
        D + CE    LG  +      YL + +  G++   IF  +K+  E K S  +    S  G+E+LIK+VAQAIP YTMSCF++P  +C EI+         
Subjt:  DRRNCET--SLGIKRSVSLDYYLRMSAQSGRNNGVIFNHIKDGGE-KPSKARRISFSLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEIDR--------

Query:  ---------------------------------------PWISNKSTYKLNILNEDLKG-QRIKYLIDGNNK-WREDLICQNSSHQEAESILNIPLGDVK
                                                W+    TYK+    +      R+  LID   K WR+D++       EA +IL+IPL    
Subjt:  ---------------------------------------PWISNKSTYKLNILNEDLKG-QRIKYLIDGNNK-WREDLICQNSSHQEAESILNIPLGDVK

Query:  FKDEIIWHPNSKGSFTVKSAYRLAM-ESSNLKEEAQSNNNKLVSLWKKLWPTEAIPRAKI
         +D+IIW  N KG F+VKSAY +A+    N++    S+ +    LW+KLW     P+ +I
Subjt:  FKDEIIWHPNSKGSFTVKSAYRLAM-ESSNLKEEAQSNNNKLVSLWKKLWPTEAIPRAKI

XP_028068804.1 uncharacterized protein LOC114271378 [Camellia sinensis]1.1e-1631.53Show/hide
Query:  SLGIKRSVSLDYYLRMSAQSGRNNGVIFNHIKDG-GEKPSKARRISFSLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEIDRPWISNKSTYKLNILNED
        ++G+   V    YL +    GR+   IFN +KD    + +  + I  S+ G+E+L+KSVAQAIP Y MSCF+LP  IC +ID                  
Subjt:  SLGIKRSVSLDYYLRMSAQSGRNNGVIFNHIKDG-GEKPSKARRISFSLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEIDRPWISNKSTYKLNILNED

Query:  LKGQRIKYLIDGNNK-WREDLICQNSSHQEAESILNIPLGDVKFKDEIIWHPNSKGSFTVKSAYRLAMESSNLKEEAQSNNNKLVS-LWKKLWPTEAIPR
        L+G  +  LID +   W  +++ +N    + E+I  IPL      D+++WH    G F+V+ AY L M  S  +     ++ + VS  WK++W      +
Subjt:  LKGQRIKYLIDGNNK-WREDLICQNSSHQEAESILNIPLGDVKFKDEIIWHPNSKGSFTVKSAYRLAMESSNLKEEAQSNNNKLVS-LWKKLWPTEAIPR

Query:  AKI
         K+
Subjt:  AKI

XP_030923348.1 uncharacterized protein LOC115950262 [Quercus lobata]2.3e-1935.32Show/hide
Query:  DRRNCE--TSLGIKRSVSLDYYLRMSAQSGRNNGVIFNHIKDGGEKP-SKARRISFSLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEIDRP-----WI
        D R CE    LG  +      YL + +  G++   IF  IK+  EK  S+ +    S+ G+E+LIK+VAQAIP YTMSCF++P ++C+EI+       W 
Subjt:  DRRNCE--TSLGIKRSVSLDYYLRMSAQSGRNNGVIFNHIKDGGEKP-SKARRISFSLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEIDRP-----WI

Query:  SNKSTYKLNILNEDLKGQRIKYLIDGNNKWREDLICQNSS--HQEAESILNIPLGDVKFKDEIIWHPNSKGSFTVKSAYRLAMESSNLKEEAQSNNNKLV
              K+  ++     +  K  ++G   +R +L   N +   ++A++ILNIPL     +D+IIW  N +G F VKSAY +A+   +  EE +S+++   
Subjt:  SNKSTYKLNILNEDLKGQRIKYLIDGNNKWREDLICQNSS--HQEAESILNIPLGDVKFKDEIIWHPNSKGSFTVKSAYRLAMESSNLKEEAQSNNNKLV

Query:  S-LWKKLWPTEAIPRAKI
        S LWKKLW     P+ +I
Subjt:  S-LWKKLWPTEAIPRAKI

XP_030970589.1 uncharacterized protein LOC115990964 [Quercus lobata]8.2e-1727.43Show/hide
Query:  EKDRRNCETSLGIKRSVSLDYYLRMSAQSGRNNGVIFNHIKDGGEKPSKARRIS-FSLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEIDR--------
        E  +   + + G+   +  + YL + +  G+     FN+IK+   +  +       S  G+EVL+K+V QAIP YTM CF+LP  +CNEI+         
Subjt:  EKDRRNCETSLGIKRSVSLDYYLRMSAQSGRNNGVIFNHIKDGGEKPSKARRIS-FSLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEIDR--------

Query:  --------PWISNKSTYKLNILNEDLKGQRIKYLIDG-NNKWREDLICQNSSHQEAESILNIPLGDVKFKDEIIWHPNSKGSFTVKSAYRLAMESSNLKE
                 W+  +   K   + E  +   +  LID  +  W E+L+      ++AE I  IPL     +D + W  ++ G +T KS YR   E S    
Subjt:  --------PWISNKSTYKLNILNEDLKGQRIKYLIDG-NNKWREDLICQNSSHQEAESILNIPLGDVKFKDEIIWHPNSKGSFTVKSAYRLAMESSNLKE

Query:  EAQSNNNKLVSLWKKLWPTEAIPRAK
         AQ+       +WK +W  +  P+ +
Subjt:  EAQSNNNKLVSLWKKLWPTEAIPRAK

TrEMBL top hitse value%identityAlignment
A0A2N9FHJ0 Uncharacterized protein1.7e-1531.95Show/hide
Query:  YLRMSAQSGRNNGVIFNHIKDG-GEKPSKARRISFSLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEID----RPWISN----------------KSTY
        YL + +  GRN    F  IK+   +K    +    S  G+E+LIK+VAQAIP     CF+LP  +CNE++    R W SN                +  Y
Subjt:  YLRMSAQSGRNNGVIFNHIKDG-GEKPSKARRISFSLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEID----RPWISN----------------KSTY

Query:  KLNILNEDLKGQRIKYLIDGNNKWREDLICQNSSHQEAESILNIPLGDVKFKDEIIWHPNSKGSFTVKSAYRLAMESSNLKEEAQSNNNKLVSLWKKLWP
        K  +   DL+ +    L+    KW   LI       +A++I  IPL +    D+IIW  N+ G +TV+S YR  +E +       S  N L  LWK +W 
Subjt:  KLNILNEDLKGQRIKYLIDGNNKWREDLICQNSSHQEAESILNIPLGDVKFKDEIIWHPNSKGSFTVKSAYRLAMESSNLKEEAQSNNNKLVSLWKKLWP

Query:  TEAIPRAKICVIIMWAIWNHRNKSSVSKSQQSQILLFSTIE
         + IPR   C +  W        + ++  QQ QI + ST E
Subjt:  TEAIPRAKICVIIMWAIWNHRNKSSVSKSQQSQILLFSTIE

A0A2N9J2A6 Reverse transcriptase domain-containing protein9.8e-1628.84Show/hide
Query:  DRRNCETSL-GIKRSVSLDYYLRMSAQSGRNNGVIFNHIKDGGEKPSKA-RRISFSLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEI-----------
        D R   T+L G   +   + YL +    GR+    FN +KD   +  +  +    S  G+EVLIK+V QAIP Y MSCF+LP   C+EI           
Subjt:  DRRNCETSL-GIKRSVSLDYYLRMSAQSGRNNGVIFNHIKDGGEKPSKA-RRISFSLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEI-----------

Query:  -DRP----WISNKSTYKLNILNEDLK-GQR-------------------------------------IKYLIDGNN-KWREDLICQNSSHQEAESILNIP
         DR     W+S K   K     E LK G R                                     +  LI   +  W ++LI Q    ++ E IL+IP
Subjt:  -DRP----WISNKSTYKLNILNEDLK-GQR-------------------------------------IKYLIDGNN-KWREDLICQNSSHQEAESILNIP

Query:  LGDVKFKDEIIWHPNSKGSFTVKSAYRLAMESSNLKEEAQSNNNKLVS-LWKKLWPTEAIPRAKICV
        L     +D +IWH    GS +VKSAY++ +  +N +E + S  ++ +S LW  +W  +  P+ ++ +
Subjt:  LGDVKFKDEIIWHPNSKGSFTVKSAYRLAMESSNLKEEAQSNNNKLVS-LWKKLWPTEAIPRAKICV

A0A5B6V614 Reverse transcriptase9.8e-1624.34Show/hide
Query:  MEEKDRRNCETSLGIKRSVSLDYYLRMSAQSGRNNGVIFNHIKDGGEKPSKARRISF-SLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEIDR------
        ++++ R      LG++ + +   YL +    GR     F +  D   K   +    F S+ GKEV IK++ QAIPIY M CF LP ++CN ++       
Subjt:  MEEKDRRNCETSLGIKRSVSLDYYLRMSAQSGRNNGVIFNHIKDGGEKPSKARRISF-SLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEIDR------

Query:  ------------------------------------------------PWISNKSTYKLNILNEDLKGQRIKYLIDGNN-KWREDLICQNSSHQEAESIL
                                                        PW+      +L + N +++   + +LID ++  W+ED+I + +   +A  IL
Subjt:  ------------------------------------------------PWISNKSTYKLNILNEDLKGQRIKYLIDGNN-KWREDLICQNSSHQEAESIL

Query:  NIPLGDVKFKDEIIWHPNSKGSFTVKSAYRLAMES-SNLKEEAQSNNNKLVSLWKKLWPTEAIPRAK
        +IPL     +D ++W  ++ G +TVKS YR+ + S S        +  K  S +K+LW  +   + K
Subjt:  NIPLGDVKFKDEIIWHPNSKGSFTVKSAYRLAMES-SNLKEEAQSNNNKLVSLWKKLWPTEAIPRAK

A0A803PYI0 Uncharacterized protein6.8e-1730.61Show/hide
Query:  MEEKDRRNCETSLGIKRSVSLDYYLRMSAQSGRNNGVIFNHIKDGGEKPSKARRIS-FSLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEIDRP-----
        + ++ R      +G++   +   YL + +  GRN     + IK+      K  + S FS+ GKEVLIKS+ QAIP YTM+CF+L     + + R      
Subjt:  MEEKDRRNCETSLGIKRSVSLDYYLRMSAQSGRNNGVIFNHIKDGGEKPSKARRIS-FSLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEIDRP-----

Query:  WISNKSTYK----------------------LNILNEDLKGQRIKYLIDGNNKWREDLICQNSSHQE-------AESILNIPLGDVKFKDEIIWHPNSKG
        W S+    K                      L + N+ L  ++I   I    +    ++  +   ++       AE IL IP  D  F+D+I+WH +  G
Subjt:  WISNKSTYK----------------------LNILNEDLKGQRIKYLIDGNNKWREDLICQNSSHQE-------AESILNIPLGDVKFKDEIIWHPNSKG

Query:  SFTVKSAYRLAMESSNLKEEAQSNNNKLVSLWKKLWPTEAIPRAK
         +TVKS YR+A  SS   E+ QSN++ LV  WKKLW  +  P+ K
Subjt:  SFTVKSAYRLAMESSNLKEEAQSNNNKLVSLWKKLWPTEAIPRAK

A0A803Q3X2 Uncharacterized protein3.8e-2032.33Show/hide
Query:  RRNCETSLGIKRSVSLDYYLRMSAQSGRNNGVIFNHIKDGGEKPSKARRIS-FSLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEIDR-----------
        R+   + +G++   +   YL + +  GRN     + IK+      K  + S FS+ GKEVLIK+V QAIP YTMSCFRL     + I R           
Subjt:  RRNCETSLGIKRSVSLDYYLRMSAQSGRNNGVIFNHIKDGGEKPSKARRIS-FSLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEIDR-----------

Query:  -------PWISNKSTYKL--------NILNEDLKGQRIKYLIDGNNKWREDLICQNSSHQEAESILNIPLGDVKFKDEIIWHPNSKGSFTVKSAYRLAME
               PW+    T+K+        N++  D+K         G+ +W E  I    +H++A+ IL++P    + +D+I+WH +  G +TVKS Y++A  
Subjt:  -------PWISNKSTYKL--------NILNEDLKGQRIKYLIDGNNKWREDLICQNSSHQEAESILNIPLGDVKFKDEIIWHPNSKGSFTVKSAYRLAME

Query:  SSNLKEEAQSNNNKLVSLWKKLWPTEAIPRAK
        SS + E+ QSN+  LV   K LW  +  P+ K
Subjt:  SSNLKEEAQSNNNKLVSLWKKLWPTEAIPRAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAGAAAGATAGAAGGAATTGTGAAACCTCGCTAGGCATCAAAAGATCTGTCTCGCTTGACTACTATTTGAGAATGTCAGCGCAGTCAGGAAGAAACAATGGAGT
GATTTTCAACCATATCAAAGACGGAGGGGAAAAACCCTCCAAGGCTAGAAGGATAAGCTTTTCTCTCTGGGGCAAAGAAGTGCTTATCAAATCAGTGGCACAAGCTATCC
CAATATATACGATGAGTTGTTTTCGTCTTCCTACTAACATTTGCAATGAAATTGACAGACCATGGATCTCCAACAAGAGCACCTACAAGCTTAACATCCTTAATGAGGAC
CTGAAAGGCCAAAGAATAAAGTACCTCATTGATGGGAACAATAAATGGAGGGAGGACCTTATTTGCCAAAATTCCAGCCATCAAGAAGCTGAATCTATATTAAACATACC
ATTAGGAGATGTCAAATTTAAAGATGAGATCATATGGCACCCAAACAGCAAAGGATCCTTCACGGTGAAAAGCGCCTACAGGCTGGCCATGGAATCTTCAAATCTAAAGG
AAGAGGCACAATCGAATAACAACAAGCTTGTCTCCCTTTGGAAAAAGCTATGGCCAACTGAAGCTATTCCAAGAGCAAAAATTTGCGTCATCATAATGTGGGCGATTTGG
AACCATAGAAACAAATCCTCAGTTTCAAAGTCTCAGCAGTCTCAAATTCTCTTGTTTTCTACTATTGAAGCCAACTTGCAAGAAAGAAAGAAGAGATTGGAAGTCGAAAC
AGATGTGAAGGAGGTTATCAACGCCATCAATGGCGTCTCTAAAGAATTGACAGAGACGAAGAATTTGGTGGAGGCAATTTCCTACTCCTCTTTAGTGCTCGTCTCTGTGA
TTTTTCACCATCGCAAGAGAAGCTCCAACACAGCAGCTCACTTTGTTGCTCAAAAATCTTTCTCCCTCTCTTGGAGATCCCTACATACCGGTATGCAGGGAAGTTTTGTT
CAAAAAGGAAAAAACTTCCCTACATACCGGGAGATCCCTACATACCGGTATGCAGGGAAGTTTTGTTCAAAAAGGAAAAAACTTCCCTACATACCGAAATCAAGGAATCA
ACGAGGCCAGCACAACACCAACCTGAGATACAACTGGGAAGCAGACCACGGGGAAGACAGAGGGCCGAGGGGATTGGGCTTTGGCCCAATCTCTAGCCTCGACCTCTACC
CTGCCTTAGCCCACGTTTGTGAGTTGAGTCTCTTTCCCTGTACTCAGTTCCCTGGAGTCTTGGAGGAGCTCGGTTCGACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAGAAAGATAGAAGGAATTGTGAAACCTCGCTAGGCATCAAAAGATCTGTCTCGCTTGACTACTATTTGAGAATGTCAGCGCAGTCAGGAAGAAACAATGGAGT
GATTTTCAACCATATCAAAGACGGAGGGGAAAAACCCTCCAAGGCTAGAAGGATAAGCTTTTCTCTCTGGGGCAAAGAAGTGCTTATCAAATCAGTGGCACAAGCTATCC
CAATATATACGATGAGTTGTTTTCGTCTTCCTACTAACATTTGCAATGAAATTGACAGACCATGGATCTCCAACAAGAGCACCTACAAGCTTAACATCCTTAATGAGGAC
CTGAAAGGCCAAAGAATAAAGTACCTCATTGATGGGAACAATAAATGGAGGGAGGACCTTATTTGCCAAAATTCCAGCCATCAAGAAGCTGAATCTATATTAAACATACC
ATTAGGAGATGTCAAATTTAAAGATGAGATCATATGGCACCCAAACAGCAAAGGATCCTTCACGGTGAAAAGCGCCTACAGGCTGGCCATGGAATCTTCAAATCTAAAGG
AAGAGGCACAATCGAATAACAACAAGCTTGTCTCCCTTTGGAAAAAGCTATGGCCAACTGAAGCTATTCCAAGAGCAAAAATTTGCGTCATCATAATGTGGGCGATTTGG
AACCATAGAAACAAATCCTCAGTTTCAAAGTCTCAGCAGTCTCAAATTCTCTTGTTTTCTACTATTGAAGCCAACTTGCAAGAAAGAAAGAAGAGATTGGAAGTCGAAAC
AGATGTGAAGGAGGTTATCAACGCCATCAATGGCGTCTCTAAAGAATTGACAGAGACGAAGAATTTGGTGGAGGCAATTTCCTACTCCTCTTTAGTGCTCGTCTCTGTGA
TTTTTCACCATCGCAAGAGAAGCTCCAACACAGCAGCTCACTTTGTTGCTCAAAAATCTTTCTCCCTCTCTTGGAGATCCCTACATACCGGTATGCAGGGAAGTTTTGTT
CAAAAAGGAAAAAACTTCCCTACATACCGGGAGATCCCTACATACCGGTATGCAGGGAAGTTTTGTTCAAAAAGGAAAAAACTTCCCTACATACCGAAATCAAGGAATCA
ACGAGGCCAGCACAACACCAACCTGAGATACAACTGGGAAGCAGACCACGGGGAAGACAGAGGGCCGAGGGGATTGGGCTTTGGCCCAATCTCTAGCCTCGACCTCTACC
CTGCCTTAGCCCACGTTTGTGAGTTGAGTCTCTTTCCCTGTACTCAGTTCCCTGGAGTCTTGGAGGAGCTCGGTTCGACCTAG
Protein sequenceShow/hide protein sequence
MEEKDRRNCETSLGIKRSVSLDYYLRMSAQSGRNNGVIFNHIKDGGEKPSKARRISFSLWGKEVLIKSVAQAIPIYTMSCFRLPTNICNEIDRPWISNKSTYKLNILNED
LKGQRIKYLIDGNNKWREDLICQNSSHQEAESILNIPLGDVKFKDEIIWHPNSKGSFTVKSAYRLAMESSNLKEEAQSNNNKLVSLWKKLWPTEAIPRAKICVIIMWAIW
NHRNKSSVSKSQQSQILLFSTIEANLQERKKRLEVETDVKEVINAINGVSKELTETKNLVEAISYSSLVLVSVIFHHRKRSSNTAAHFVAQKSFSLSWRSLHTGMQGSFV
QKGKNFPTYREIPTYRYAGKFCSKRKKLPYIPKSRNQRGQHNTNLRYNWEADHGEDRGPRGLGFGPISSLDLYPALAHVCELSLFPCTQFPGVLEELGST