; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0025457 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025457
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPoly(A)-specific ribonuclease
Genome locationchr10:13309554..13309943
RNA-Seq ExpressionLag0025457
SyntenyLag0025457
Gene Ontology termsGO:0043928 - exonucleolytic catabolism of deadenylated mRNA (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0000932 - P-body (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0030015 - CCR4-NOT core complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR039637 - CCR4-NOT transcription complex subunit 7/8/Pop2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7035921.1 putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-3382.42Show/hide
Query:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        VGLTLSDA GNLPTLGT K FIWEFNFRDFDVT D HAPD IDLLKRQGIDF RNRAH V SA F +LLMSSGLL N SVSWVTFHS Y+F
Subjt:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF

XP_004140166.1 probable CCR4-associated factor 1 homolog 9 [Cucumis sativus]6.0e-3274.73Show/hide
Query:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        +GLTLSDAHGNLPTLGT  +FIWEFNFRDFDV  DPHAPD I+LLK+QGIDF RNR H V S+ F  L+MSSGLL NDS++WVTFHS Y+F
Subjt:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF

XP_022957732.1 probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata]3.2e-3382.42Show/hide
Query:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        VGLTLSDA GNLPTLGT K FIWEFNFRDFDVT D HAPD IDLLKRQGIDF RNRAH V SA F +LLMSSGLL N SVSWVTFHS Y+F
Subjt:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF

XP_022995114.1 probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima]3.2e-3382.42Show/hide
Query:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        VGLTLSDA GNLPTLGT K FIWEFNFRDFDVT D HAPD IDLLKRQGIDF RNRAH V SA F +LLMSSGLL N SVSWVTFHS Y+F
Subjt:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF

XP_023534188.1 probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo]3.2e-3382.42Show/hide
Query:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        VGLTLSDA GNLPTLGT K FIWEFNFRDFDVT D HAPD IDLLKRQGIDF RNRAH V SA F +LLMSSGLL N SVSWVTFHS Y+F
Subjt:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF

TrEMBL top hitse value%identityAlignment
A0A0A0KI60 Poly(A)-specific ribonuclease2.9e-3274.73Show/hide
Query:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        +GLTLSDAHGNLPTLGT  +FIWEFNFRDFDV  DPHAPD I+LLK+QGIDF RNR H V S+ F  L+MSSGLL NDS++WVTFHS Y+F
Subjt:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF

A0A445HS97 Poly(A)-specific ribonuclease1.6e-3073.63Show/hide
Query:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        +GLTLSD++GNLP LGTA  FIWEFNFRDFDV  D HAPD IDLL+RQGIDF RN A  V S LF +L+MSSGL+ NDSVSWVTFHS Y+F
Subjt:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF

A0A6J1GZY2 Poly(A)-specific ribonuclease1.5e-3382.42Show/hide
Query:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        VGLTLSDA GNLPTLGT K FIWEFNFRDFDVT D HAPD IDLLKRQGIDF RNRAH V SA F +LLMSSGLL N SVSWVTFHS Y+F
Subjt:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF

A0A6J1K4S7 Poly(A)-specific ribonuclease1.5e-3382.42Show/hide
Query:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        VGLTLSDA GNLPTLGT K FIWEFNFRDFDVT D HAPD IDLLKRQGIDF RNRAH V SA F +LLMSSGLL N SVSWVTFHS Y+F
Subjt:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF

I1LTY5 Poly(A)-specific ribonuclease1.6e-3073.63Show/hide
Query:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        +GLTLSD++GNLP LGTA  FIWEFNFRDFDV  D HAPD IDLL+RQGIDF RN A  V S LF +L+MSSGL+ NDSVSWVTFHS Y+F
Subjt:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF

SwissProt top hitse value%identityAlignment
Q9FMS6 Probable CCR4-associated factor 1 homolog 113.4e-3068.82Show/hide
Query:  VGLTLSDAHGNLPTLGTAKT--FIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        VGLTLSDA GNLP LG  K   +IWEFNFRDFDV  DPHAPD I+LL+R GIDF RNR   V S  F +L+MSSGL+ N+SVSWVTFHS Y+F
Subjt:  VGLTLSDAHGNLPTLGTAKT--FIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF

Q9LEU4 Probable CCR4-associated factor 1 homolog 101.0e-2151.65Show/hide
Query:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        VGLT SD +GNLPT GT K  IW+FNFR+F++  D +A + I+LL++ GIDF +N    +    F +L+MSSG++ ND++SWVTFH  Y+F
Subjt:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF

Q9LXM2 Probable CCR4-associated factor 1 homolog 97.1e-2865.59Show/hide
Query:  VGLTLSDAHGNLPTLG--TAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        VGLTLSD +GNLP LG    + FIWEFNFRDFDV  D HAPD I+LL+RQGIDF RN    V S  F +L+MSSGL+ N+ VSWVTFHS Y+F
Subjt:  VGLTLSDAHGNLPTLG--TAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF

Q9SAI2 Probable CCR4-associated factor 1 homolog 62.0e-2254.95Show/hide
Query:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        +GLT S+  GNLPT GT K  IW+FNFR+FD+  D  A D I+LLK+ GID A+N    + S  F +LLMSSG++ N++V WVTFHS Y+F
Subjt:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF

Q9SKZ2 Probable CCR4-associated factor 1 homolog 73.4e-2253.26Show/hide
Query:  VGLTLSDAHGNLPTLGTAKTF-IWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        +GLT SD  GNLPT GT   + IW+FNFR+FD+  D +A D I+LL++ GIDF +N    + S  F +LLMSSG++ N++V WVTFHS Y+F
Subjt:  VGLTLSDAHGNLPTLGTAKTF-IWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF

Arabidopsis top hitse value%identityAlignment
AT1G80780.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-2354.95Show/hide
Query:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        +GLT S+  GNLPT GT K  IW+FNFR+FD+  D  A D I+LLK+ GID A+N    + S  F +LLMSSG++ N++V WVTFHS Y+F
Subjt:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF

AT1G80780.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-2354.95Show/hide
Query:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        +GLT S+  GNLPT GT K  IW+FNFR+FD+  D  A D I+LLK+ GID A+N    + S  F +LLMSSG++ N++V WVTFHS Y+F
Subjt:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF

AT1G80780.3 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-2354.95Show/hide
Query:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        +GLT S+  GNLPT GT K  IW+FNFR+FD+  D  A D I+LLK+ GID A+N    + S  F +LLMSSG++ N++V WVTFHS Y+F
Subjt:  VGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF

AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.1e-2965.59Show/hide
Query:  VGLTLSDAHGNLPTLG--TAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        VGLTLSD +GNLP LG    + FIWEFNFRDFDV  D HAPD I+LL+RQGIDF RN    V S  F +L+MSSGL+ N+ VSWVTFHS Y+F
Subjt:  VGLTLSDAHGNLPTLG--TAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF

AT5G22250.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.4e-3168.82Show/hide
Query:  VGLTLSDAHGNLPTLGTAKT--FIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF
        VGLTLSDA GNLP LG  K   +IWEFNFRDFDV  DPHAPD I+LL+R GIDF RNR   V S  F +L+MSSGL+ N+SVSWVTFHS Y+F
Subjt:  VGLTLSDAHGNLPTLGTAKT--FIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGGCCTCACCCTCTCCGACGCCCACGGAAACCTTCCCACTCTCGGCACCGCCAAGACCTTCATTTGGGAGTTCAATTTCAGGGACTTCGACGTCACCCATGACCC
CCACGCGCCCGACTTCATCGACCTCCTCAAACGCCAAGGCATCGACTTCGCTCGAAACAGAGCCCACTGGGTTCACTCCGCCCTCTTCGTCAAGCTCCTCATGTCCTCCG
GCCTTCTCTATAACGACTCCGTCAGTTGGGTCACCTTCCACAGCACCTACAACTTCGCTACTTGGTCAAGATCCTCACTCGCCGGAACCTCCCCGCCCGCCTCCACGACT
TTGATCGTCGAAGTTGGGCCGAAAGGCGGCGAGATCGACGACCATGGAATTGGAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGGCCTCACCCTCTCCGACGCCCACGGAAACCTTCCCACTCTCGGCACCGCCAAGACCTTCATTTGGGAGTTCAATTTCAGGGACTTCGACGTCACCCATGACCC
CCACGCGCCCGACTTCATCGACCTCCTCAAACGCCAAGGCATCGACTTCGCTCGAAACAGAGCCCACTGGGTTCACTCCGCCCTCTTCGTCAAGCTCCTCATGTCCTCCG
GCCTTCTCTATAACGACTCCGTCAGTTGGGTCACCTTCCACAGCACCTACAACTTCGCTACTTGGTCAAGATCCTCACTCGCCGGAACCTCCCCGCCCGCCTCCACGACT
TTGATCGTCGAAGTTGGGCCGAAAGGCGGCGAGATCGACGACCATGGAATTGGAAGATGA
Protein sequenceShow/hide protein sequence
MVGLTLSDAHGNLPTLGTAKTFIWEFNFRDFDVTHDPHAPDFIDLLKRQGIDFARNRAHWVHSALFVKLLMSSGLLYNDSVSWVTFHSTYNFATWSRSSLAGTSPPASTT
LIVEVGPKGGEIDDHGIGR