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Lag0025482 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025482
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr10:13665809..13666308
RNA-Seq ExpressionLag0025482
SyntenyLag0025482
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039052.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-1050Show/hide
Query:  IATLENLILDKVIFPSQQPN-ETSSPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESSQPLPSKTMER
        I   EN ++D+    S++ N ET  P++MS++ TD  TS+ RM E+EKKINML+K VEE D EIASL+N +ESRD AESS    +  +E+
Subjt:  IATLENLILDKVIFPSQQPN-ETSSPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESSQPLPSKTMER

KAA0043321.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.0e-1051.11Show/hide
Query:  ETQDKSAQLEIATLENLILDKVIFPSQQPN-ETSSPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESS
        E   K  + E+   EN  +D+    S++ N E S P++MS+M+TD  TSE+RM E+EKK+NML+K VEE D EIA L+N +ESRD AESS
Subjt:  ETQDKSAQLEIATLENLILDKVIFPSQQPN-ETSSPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESS

KAA0045983.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.0e-1043.64Show/hide
Query:  IATLENLILDKVIFPSQQPNETS-SPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESSQPLPSKTM---ERLLHKISH
        I   EN ++DK    S+  +E    P++MS+MM D  TSE+RM+E+EKKINML+K VE  + EIASL+N +ESRD +ESS  + S+ +    +L  K++H
Subjt:  IATLENLILDKVIFPSQQPNETS-SPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESSQPLPSKTM---ERLLHKISH

Query:  NIPLLLLHCS
         I   ++  S
Subjt:  NIPLLLLHCS

KAA0050708.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-1054.93Show/hide
Query:  PNETSSPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESSQPLPSKTMER
        P ET  P++MS+M+T+  TSE+RM ++EKKINML+K+VEE D EIASL+N +ESRD  ESS    +K +++
Subjt:  PNETSSPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESSQPLPSKTMER

TYK13602.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.0e-1043.64Show/hide
Query:  IATLENLILDKVIFPSQQPNETS-SPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESSQPLPSKTM---ERLLHKISH
        I   EN ++DK    S+  +E    P++MS+MM D  TSE+RM+E+EKKINML+K VE  + EIASL+N +ESRD +ESS  + S+ +    +L  K++H
Subjt:  IATLENLILDKVIFPSQQPNETS-SPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESSQPLPSKTM---ERLLHKISH

Query:  NIPLLLLHCS
         I   ++  S
Subjt:  NIPLLLLHCS

TrEMBL top hitse value%identityAlignment
A0A5A7T6D4 Ty3-gypsy retrotransposon protein6.7e-1150Show/hide
Query:  IATLENLILDKVIFPSQQPN-ETSSPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESSQPLPSKTMER
        I   EN ++D+    S++ N ET  P++MS++ TD  TS+ RM E+EKKINML+K VEE D EIASL+N +ESRD AESS    +  +E+
Subjt:  IATLENLILDKVIFPSQQPN-ETSSPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESSQPLPSKTMER

A0A5A7TP10 Ty3-gypsy retrotransposon protein2.0e-1051.11Show/hide
Query:  ETQDKSAQLEIATLENLILDKVIFPSQQPN-ETSSPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESS
        E   K  + E+   EN  +D+    S++ N E S P++MS+M+TD  TSE+RM E+EKK+NML+K VEE D EIA L+N +ESRD AESS
Subjt:  ETQDKSAQLEIATLENLILDKVIFPSQQPN-ETSSPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESS

A0A5A7TQZ3 Ty3-gypsy retrotransposon protein2.0e-1043.64Show/hide
Query:  IATLENLILDKVIFPSQQPNETS-SPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESSQPLPSKTM---ERLLHKISH
        I   EN ++DK    S+  +E    P++MS+MM D  TSE+RM+E+EKKINML+K VE  + EIASL+N +ESRD +ESS  + S+ +    +L  K++H
Subjt:  IATLENLILDKVIFPSQQPNETS-SPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESSQPLPSKTM---ERLLHKISH

Query:  NIPLLLLHCS
         I   ++  S
Subjt:  NIPLLLLHCS

A0A5A7U601 Ty3-gypsy retrotransposon protein8.8e-1154.93Show/hide
Query:  PNETSSPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESSQPLPSKTMER
        P ET  P++MS+M+T+  TSE+RM ++EKKINML+K+VEE D EIASL+N +ESRD  ESS    +K +++
Subjt:  PNETSSPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESSQPLPSKTMER

A0A5D3C4W1 Ty3-gypsy retrotransposon protein2.0e-1044.86Show/hide
Query:  KIAASNAETQDKSAQLEIATLENLILDK-VIFPSQQPNETSSPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESSQPL
        ++A +  E   K  +  I   EN  +D+   F      E + P++MS+M+TD  TSE RMVE+EKK+NML+K+VEE D EIASL+N +ESRD AESS   
Subjt:  KIAASNAETQDKSAQLEIATLENLILDK-VIFPSQQPNETSSPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESSQPL

Query:  PSKTMER
          K  ++
Subjt:  PSKTMER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCCGCAGAAGCTTCTTCAAAGATCGCTGCTTCAAATGCTGAGACGCAGGACAAATCTGCTCAACTTGAAATCGCCACTTTAGAAAATCTAATACTTGACAAAGT
CATCTTTCCTTCTCAGCAACCAAACGAAACATCCAGTCCTGATGTGATGTCTATTATGATGACTGATGCAAGAACTAGTGAAGAACGAATGGTTGAAGTTGAGAAGAAAA
TCAACATGTTACTAAAGATGGTCGAAGAGAATGACCAAGAAATCGCCTCTCTCAGAAACCAAATGGAAAGTCGGGATGTTGCTGAATCGAGTCAGCCCCTGCCATCAAAG
ACAATGGAAAGATTATTGCACAAGATCAGTCACAACATTCCACTTCTATTGCTTCACTGTTCGTCCAGCAGCTCTAGGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGACTTCCGCAGAAGCTTCTTCAAAGATCGCTGCTTCAAATGCTGAGACGCAGGACAAATCTGCTCAACTTGAAATCGCCACTTTAGAAAATCTAATACTTGACAAAGT
CATCTTTCCTTCTCAGCAACCAAACGAAACATCCAGTCCTGATGTGATGTCTATTATGATGACTGATGCAAGAACTAGTGAAGAACGAATGGTTGAAGTTGAGAAGAAAA
TCAACATGTTACTAAAGATGGTCGAAGAGAATGACCAAGAAATCGCCTCTCTCAGAAACCAAATGGAAAGTCGGGATGTTGCTGAATCGAGTCAGCCCCTGCCATCAAAG
ACAATGGAAAGATTATTGCACAAGATCAGTCACAACATTCCACTTCTATTGCTTCACTGTTCGTCCAGCAGCTCTAGGATATGA
Protein sequenceShow/hide protein sequence
MTSAEASSKIAASNAETQDKSAQLEIATLENLILDKVIFPSQQPNETSSPDVMSIMMTDARTSEERMVEVEKKINMLLKMVEENDQEIASLRNQMESRDVAESSQPLPSK
TMERLLHKISHNIPLLLLHCSSSSSRI