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Lag0025483 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025483
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr10:13761190..13761739
RNA-Seq ExpressionLag0025483
SyntenyLag0025483
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006487889.1 uncharacterized protein LOC102617714 [Citrus sinensis]8.2e-0948.44Show/hide
Query:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLG-----DFRRTNVSEVLK
        MSVF+ P +ICEDI ++ ARFWWGSS ++R +HW KW+KL   K  G     DF   N + + K
Subjt:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLG-----DFRRTNVSEVLK

XP_013639569.1 PREDICTED: uncharacterized protein LOC106344806 [Brassica oleracea var. oleracea]1.1e-0855.32Show/hide
Query:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLG
        MSVF+ PK IC++I+ + A FWWGS   K+K+HW  WDK  LPK +G
Subjt:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLG

XP_018479968.1 PREDICTED: uncharacterized protein LOC108851032 [Raphanus sativus]1.4e-0855.32Show/hide
Query:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLG
        MSVFR PK IC +I  + A +WWG+ +  RK+HW  WDKL LPK +G
Subjt:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLG

XP_022131662.1 uncharacterized protein LOC111004787 [Momordica charantia]1.5e-1059.57Show/hide
Query:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLG
        MSVFR PK  CE++++ FARFWWGSS++ +KLHW  W+++ LPK LG
Subjt:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLG

XP_024163724.1 uncharacterized protein LOC112170610 [Rosa chinensis]1.6e-0953.57Show/hide
Query:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLGDFRRTNVSE
        MSVF+  KN CED+    ARFWWGS+D+KRK+HW  W+KL LPK  G     ++S+
Subjt:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLGDFRRTNVSE

TrEMBL top hitse value%identityAlignment
A0A1S8AC01 Ribonuclease H-like superfamily protein1.1e-0838Show/hide
Query:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLG-----DFRRTNVSEVLKNNPSPSTDPSSTHLNIPSPESDALRIFVDAAWTSNP
        MSVF+ P  +C+DI R+ A FWWGS  EKR +HW KW++L   KS G     DF   N + V K        P S    +   +      F++A   SNP
Subjt:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLG-----DFRRTNVSEVLKNNPSPSTDPSSTHLNIPSPESDALRIFVDAAWTSNP

A0A6J0N7Y1 uncharacterized protein LOC1088510326.7e-0955.32Show/hide
Query:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLG
        MSVFR PK IC +I  + A +WWG+ +  RK+HW  WDKL LPK +G
Subjt:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLG

A0A6J1BRN0 uncharacterized protein LOC1110047877.2e-1159.57Show/hide
Query:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLG
        MSVFR PK  CE++++ FARFWWGSS++ +KLHW  W+++ LPK LG
Subjt:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLG

A0A803NWY3 Uncharacterized protein6.7e-0953.57Show/hide
Query:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLGDFRRTNVSE
        MS FR PK + +DI    ARFWWGSSD K K+HW KWDKL  PK  G     N+ +
Subjt:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLGDFRRTNVSE

A0A803QNS7 Uncharacterized protein1.1e-0851.79Show/hide
Query:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLGDFRRTNVSE
        MS FR PK + +DI    ARFWWGSSD K K+HW KWDK+  PK  G     N+ +
Subjt:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLGDFRRTNVSE

SwissProt top hitse value%identityAlignment
P93295 Uncharacterized mitochondrial protein AtMg003102.5e-0545Show/hide
Query:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKL
        MS FR  K +C+ +T +   FWW S + KRK+ W  W KL
Subjt:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKL

Arabidopsis top hitse value%identityAlignment
ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.8e-0645Show/hide
Query:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKL
        MS FR  K +C+ +T +   FWW S + KRK+ W  W KL
Subjt:  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGTGTTTAGATTCCCTAAGAATATTTGTGAAGATATTACAAGAAGCTTTGCTAGGTTTTGGTGGGGTTCTAGTGACGAGAAAAGAAAGCTTCACTGGTGTAAATG
GGATAAACTATTCCTTCCTAAGAGTTTAGGAGATTTTAGAAGAACAAATGTGTCGGAGGTGTTGAAGAATAATCCTAGTCCTTCTACGGATCCGTCATCTACGCATCTGA
ATATCCCCTCTCCAGAATCTGATGCCTTGAGAATTTTCGTTGATGCGGCATGGACTTCCAATCCCCCTAAAACTGGTATTGGACTGGTTTGCTTCAATCAGAGAGGTAGT
TTGGAAGGAGCAGCGACTTCATTTTTTGATTTGGATTTTAAAGCTCCCCTTGCTGAGCTGAAAGCCATAAACGAGGGTCTAAAGCTGGCAAAAGCTTTTGCATGTTCAAA
GTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTGTGTTTAGATTCCCTAAGAATATTTGTGAAGATATTACAAGAAGCTTTGCTAGGTTTTGGTGGGGTTCTAGTGACGAGAAAAGAAAGCTTCACTGGTGTAAATG
GGATAAACTATTCCTTCCTAAGAGTTTAGGAGATTTTAGAAGAACAAATGTGTCGGAGGTGTTGAAGAATAATCCTAGTCCTTCTACGGATCCGTCATCTACGCATCTGA
ATATCCCCTCTCCAGAATCTGATGCCTTGAGAATTTTCGTTGATGCGGCATGGACTTCCAATCCCCCTAAAACTGGTATTGGACTGGTTTGCTTCAATCAGAGAGGTAGT
TTGGAAGGAGCAGCGACTTCATTTTTTGATTTGGATTTTAAAGCTCCCCTTGCTGAGCTGAAAGCCATAAACGAGGGTCTAAAGCTGGCAAAAGCTTTTGCATGTTCAAA
GTAG
Protein sequenceShow/hide protein sequence
MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLGDFRRTNVSEVLKNNPSPSTDPSSTHLNIPSPESDALRIFVDAAWTSNPPKTGIGLVCFNQRGS
LEGAATSFFDLDFKAPLAELKAINEGLKLAKAFACSK