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Lag0025489 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025489
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy1-copia retrotransposon protein
Genome locationchr10:13848688..13856658
RNA-Seq ExpressionLag0025489
SyntenyLag0025489
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33807.1 ty1-copia retrotransposon protein [Cucumis melo subsp. melo]6.2e-1048.05Show/hide
Query:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS
        V+  L+ENK+D ILDTG SRHF  NR L H+++D V GE V+M NSAT GV+GKGK   +     T+    +++  S
Subjt:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS

KAA0043346.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.8e-1048.05Show/hide
Query:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS
        V+  L+ENK+D ILDTG SRHF  NR L H+++D   GE V+MENSAT GV+GKGK   +     T+    +++  S
Subjt:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS

KAA0066784.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]6.2e-1048.05Show/hide
Query:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS
        V+  L+ENK+D ILDTG SRHF  NR L H+++D V GE V+M NSAT GV+GKGK   +     T+    +++  S
Subjt:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS

XP_022153695.1 uncharacterized protein LOC111021147 [Momordica charantia]1.5e-1154.55Show/hide
Query:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS
        V+  LVENKSD ILDTG SRHF  NR LFH+FQD   GE V+M NSAT GVLGKGK   +     T+    +++  S
Subjt:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS

XP_022156810.1 uncharacterized protein LOC111023645 [Momordica charantia]4.3e-1153.25Show/hide
Query:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS
        V+  LVENKSD ILDTGVSRHF  NR LFH+F D    EYV+M NSAT GVLGKG    +     T+    +++  S
Subjt:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS

TrEMBL top hitse value%identityAlignment
A0A5A7SP23 Ty1-copia retrotransposon protein3.0e-1048.05Show/hide
Query:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS
        V+V L+ENK+D ILDTG SRHF  NR L H+++D   GE V+M NSAT GV+GKGK   +     T+    +++  S
Subjt:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS

A0A5A7SRD3 Ty1-copia retrotransposon protein3.0e-1048.05Show/hide
Query:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS
        VK  L+ENK+D ILDTG SRHF  NR L H+++D   GE V+M NSAT GV+GKGK   +     T+    +++  S
Subjt:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS

A0A5A7TMS2 Ty1-copia retrotransposon protein1.4e-1048.05Show/hide
Query:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS
        V+  L+ENK+D ILDTG SRHF  NR L H+++D   GE V+MENSAT GV+GKGK   +     T+    +++  S
Subjt:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS

A0A6J1DHJ4 uncharacterized protein LOC1110211477.2e-1254.55Show/hide
Query:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS
        V+  LVENKSD ILDTG SRHF  NR LFH+FQD   GE V+M NSAT GVLGKGK   +     T+    +++  S
Subjt:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS

A0A6J1DRD8 uncharacterized protein LOC1110236452.1e-1153.25Show/hide
Query:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS
        V+  LVENKSD ILDTGVSRHF  NR LFH+F D    EYV+M NSAT GVLGKG    +     T+    +++  S
Subjt:  VKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGKDSSQKAGKDTIRALEMIFTKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCGAATATTCAAGCAATTCCATCCACCAAATCAGCAACAATTGACCATCGCCTCCTCCTTTCCAGAGTCGATTCACGCTCCCTCTTCAATCGCCCCACTGCTACG
CCAAATAAGCTTCTCCTTCAAGCTCAGCAGAGCCTCTCCCTCTCTTGACATATTTCCTCTCTCAACTAAATTATTTGATGAAGGAGAGATTGTTTTGATTGAGAGAAAAC
CTCAAATTTATACCAGATTGGGTCTGCATGGTGGCTGGACAGCTATTGTTGTTGGAATTAGCCAGCTTTGGATGCTAGAGTGGATCATAGGATTTTTGTTGAATTGCTTG
GAAAAGAGGCAAGTTTCTTGGTTGAGTAGGCTTCTAGAGGATATAAGTCATGGAGGAACAAATGAAGGAACAAATGGAAGAACTATTGGCCAAGCATCGTCAAGAGTAAT
TTTGGACCACACAGATGCACAAGGAGCTGACGAGGACAATCGGGCAGAGGTAGGACCAAAAGACCGACCCAGAGGAAGACCGGACCAAAAGGTCGGGCCAACATGGCCCG
ACCCATATGGTCGGCCTCGGCCTTTTGCCGAGGTCGACCATTCGGCCCGCTTGTGCGGGTCGAGCCCGATGACCTCTTTTCGGTCCCTGATGCCCCGGATCACCCCGGTT
CCGCCTGGTTCGTCCCGAAACACCTCCAAATTCCTAAAAACCCTAGGAGGGCAAACAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGATGTGCAACGGTTTTTGTTG
GTCTTGCAGGTCACGTCTTCCCCAGTTTCTACAAATTCACTGTTGGTGTCACGTGAAGGTCAGACTGGTGGAAAACAAATCTGACAAGATTCTTGACACCGGTGTTTCAA
GACACTTTTCCTTAAATCGAGGTCTATTCCACAACTTCCAAGACTTTGTTGTTGGTGAATATGTGTACATGGAGAACTCAGCCACAACTGGAGTACTTGGGAAAGGAAAG
GATTCGTCACAAAAAGCTGGAAAAGACACCATACGAGCTTTGGAAATGATATTCACAAAATCTGATATGTCTGAAGATATGGGAGTGCTTAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATCGAATATTCAAGCAATTCCATCCACCAAATCAGCAACAATTGACCATCGCCTCCTCCTTTCCAGAGTCGATTCACGCTCCCTCTTCAATCGCCCCACTGCTACG
CCAAATAAGCTTCTCCTTCAAGCTCAGCAGAGCCTCTCCCTCTCTTGACATATTTCCTCTCTCAACTAAATTATTTGATGAAGGAGAGATTGTTTTGATTGAGAGAAAAC
CTCAAATTTATACCAGATTGGGTCTGCATGGTGGCTGGACAGCTATTGTTGTTGGAATTAGCCAGCTTTGGATGCTAGAGTGGATCATAGGATTTTTGTTGAATTGCTTG
GAAAAGAGGCAAGTTTCTTGGTTGAGTAGGCTTCTAGAGGATATAAGTCATGGAGGAACAAATGAAGGAACAAATGGAAGAACTATTGGCCAAGCATCGTCAAGAGTAAT
TTTGGACCACACAGATGCACAAGGAGCTGACGAGGACAATCGGGCAGAGGTAGGACCAAAAGACCGACCCAGAGGAAGACCGGACCAAAAGGTCGGGCCAACATGGCCCG
ACCCATATGGTCGGCCTCGGCCTTTTGCCGAGGTCGACCATTCGGCCCGCTTGTGCGGGTCGAGCCCGATGACCTCTTTTCGGTCCCTGATGCCCCGGATCACCCCGGTT
CCGCCTGGTTCGTCCCGAAACACCTCCAAATTCCTAAAAACCCTAGGAGGGCAAACAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGATGTGCAACGGTTTTTGTTG
GTCTTGCAGGTCACGTCTTCCCCAGTTTCTACAAATTCACTGTTGGTGTCACGTGAAGGTCAGACTGGTGGAAAACAAATCTGACAAGATTCTTGACACCGGTGTTTCAA
GACACTTTTCCTTAAATCGAGGTCTATTCCACAACTTCCAAGACTTTGTTGTTGGTGAATATGTGTACATGGAGAACTCAGCCACAACTGGAGTACTTGGGAAAGGAAAG
GATTCGTCACAAAAAGCTGGAAAAGACACCATACGAGCTTTGGAAATGATATTCACAAAATCTGATATGTCTGAAGATATGGGAGTGCTTAGCTAA
Protein sequenceShow/hide protein sequence
MNRIFKQFHPPNQQQLTIASSFPESIHAPSSIAPLLRQISFSFKLSRASPSLDIFPLSTKLFDEGEIVLIERKPQIYTRLGLHGGWTAIVVGISQLWMLEWIIGFLLNCL
EKRQVSWLSRLLEDISHGGTNEGTNGRTIGQASSRVILDHTDAQGADEDNRAEVGPKDRPRGRPDQKVGPTWPDPYGRPRPFAEVDHSARLCGSSPMTSFRSLMPRITPV
PPGSSRNTSKFLKTLGGQTGIGGGVAYTTPMCNGFCWSCRSRLPQFLQIHCWCHVKVRLVENKSDKILDTGVSRHFSLNRGLFHNFQDFVVGEYVYMENSATTGVLGKGK
DSSQKAGKDTIRALEMIFTKSDMSEDMGVLS