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Lag0025516 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025516
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr10:14190098..14190418
RNA-Seq ExpressionLag0025516
SyntenyLag0025516
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.3e-0841.35Show/hide
Query:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE
        M S++A+S  + +SN Y GPITRSRSK    E  Q   +A  +L+++ ES +  I   EN ++    S S +  + ++PDVMS MM D  T E  M E+E
Subjt:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE

Query:  KKIN
        +KIN
Subjt:  KKIN

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.7e-0841.35Show/hide
Query:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE
        M S++A+SK +A+S+ Y GPITRSRSK       Q   IA  +L+++ ES +  I   EN ++  + S S +  + ++PDVMS MM D    E  M E+E
Subjt:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE

Query:  KKIN
        +KIN
Subjt:  KKIN

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.7e-0841.35Show/hide
Query:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE
        M S++A+SK +A+S+ Y GPITRSRSK       Q   IA  +L+++ ES +  I   EN ++  + S S +  + ++PDVMS MM D    E  M E+E
Subjt:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE

Query:  KKIN
        +KIN
Subjt:  KKIN

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.7e-0841.35Show/hide
Query:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE
        M S++A+SK +A+S+ Y GPITRSRSK       Q   IA  +L+++ ES +  I   EN ++  + S S +  + ++PDVMS MM D    E  M E+E
Subjt:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE

Query:  KKIN
        +KIN
Subjt:  KKIN

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.7e-0841.35Show/hide
Query:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE
        M S++A+SK +A+S+ Y GPITRSRSK       Q   IA  +L+++ ES +  I   EN ++  + S S +  + ++PDVMS MM D    E  M E+E
Subjt:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE

Query:  KKIN
        +KIN
Subjt:  KKIN

TrEMBL top hitse value%identityAlignment
A0A5A7TFN2 Ty3-gypsy retrotransposon protein1.8e-0840.38Show/hide
Query:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE
        M S++A+S  + +S+ Y GPITRSRSK    E  Q   +A ++L+++ ES +  I   EN ++    S S +  + ++PDV S MM D  T E  MTE+E
Subjt:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE

Query:  KKIN
        +KIN
Subjt:  KKIN

A0A5A7ULS4 Ty3-gypsy retrotransposon protein4.1e-0838.46Show/hide
Query:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE
        MTS++A+S  + +S+ Y GPITR RSK    E  Q   +A  +L+++ ES +  I   ENL++    S S +  + ++P++MS MM D  T+E  M E+E
Subjt:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE

Query:  KKIN
        +K+N
Subjt:  KKIN

A0A5A7VFQ8 Ty3-gypsy retrotransposon protein1.1e-0839.42Show/hide
Query:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE
        M S++A+SK + +S+ Y+GPITRSRSK    E  Q   +A  +L+++ ES +  I   EN ++    S S +  + + PDVMS MM D  T E  M ++E
Subjt:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE

Query:  KKIN
        +K+N
Subjt:  KKIN

A0A5D3BDK1 Ty3-gypsy retrotransposon protein4.1e-0840.38Show/hide
Query:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE
        M S++A+S  + +S+ Y GPITR+RSK    E  Q   IA  +L+++ ES +  I   EN ++    S S +  + ++PDVMS +MTD  T+E  M E+E
Subjt:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE

Query:  KKIN
        +KIN
Subjt:  KKIN

A0A5D3BY54 Ty3-gypsy retrotransposon protein6.3e-0941.35Show/hide
Query:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE
        M S++A+S  + +SN Y GPITRSRSK    E  Q   +A  +L+++ ES +  I   EN ++    S S +  + ++PDVMS MM D  T E  M E+E
Subjt:  MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVE

Query:  KKIN
        +KIN
Subjt:  KKIN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCCGAAGAAGCTTCTTCAAAGATCGCTGCTTCAAGCAACTATTATGTGGGGCCAATTACTCGCAGTCGCTCCAAGGAAACCCAACACGAAGACAGTCAAACTCA
TGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCACCACTACAGAAAATCTGATGTTTGGCAAATTCATCTCTCCTTCTCAGCAACCAA
ACGAAACATCCAACCCTGATGTGATGTCTTTTATGATGACTGATGCTGGAACTAGTGAAGAACGGATGACTGAAGTTGAGAAGAAGATTAACTGTTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTTCCGAAGAAGCTTCTTCAAAGATCGCTGCTTCAAGCAACTATTATGTGGGGCCAATTACTCGCAGTCGCTCCAAGGAAACCCAACACGAAGACAGTCAAACTCA
TGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCACCACTACAGAAAATCTGATGTTTGGCAAATTCATCTCTCCTTCTCAGCAACCAA
ACGAAACATCCAACCCTGATGTGATGTCTTTTATGATGACTGATGCTGGAACTAGTGAAGAACGGATGACTGAAGTTGAGAAGAAGATTAACTGTTACTAA
Protein sequenceShow/hide protein sequence
MTSEEASSKIAASSNYYVGPITRSRSKETQHEDSQTHVIANKMLRRMTESAQLEITTTENLMFGKFISPSQQPNETSNPDVMSFMMTDAGTSEERMTEVEKKINCY