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Lag0025524 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025524
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:14418642..14419604
RNA-Seq ExpressionLag0025524
SyntenyLag0025524
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5945963.1 hypothetical protein HYC85_016191 [Camellia sinensis]4.4e-1836.99Show/hide
Query:  KGRETICHER---IVWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLELVRDMGFDPSILETDSSRVCQ
        K R   C+ R   + W AP NGW K+NFD +   +L   G+G+++R+ +G+VM + +       D D AE YAA K++EL RD+GF    LE DS R+ +
Subjt:  KGRETICHER---IVWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLELVRDMGFDPSILETDSSRVCQ

Query:  LINRERENASELGMTIADALMAFPSYLQVLFGFTHREGNQAAHRLA
         +  E E  SE G  +   + A  S+ +       R+GN  AH LA
Subjt:  LINRERENASELGMTIADALMAFPSYLQVLFGFTHREGNQAAHRLA

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]1.2e-2846.63Show/hide
Query:  LVEWTKGYVMAFREAGRSREKGRETICHERIVWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLELVRD
        LVEW   YVM FREA  +   GR T   E ++W  P    YK+N DASFL+    AGLGII+R+  GQVM SA    +N++ VDMAE   AV+ L+L   
Subjt:  LVEWTKGYVMAFREAGRSREKGRETICHERIVWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLELVRD

Query:  MGFDPSILETDSSRVCQLINRERENASELGMTIADALMAFPSYLQVLFGFTHREGNQAAHRLA
        +G +P ILETDSSR+  L ++  E+ SE G  +  A   +   L   F F  REGN+AAH LA
Subjt:  MGFDPSILETDSSRVCQLINRERENASELGMTIADALMAFPSYLQVLFGFTHREGNQAAHRLA

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]1.1e-2141.1Show/hide
Query:  LVEWTKGYVMAFREAGRSREKGRETICHERIVWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLELVRD
        LVEW   Y M FREA  +   GR T   E I+W+ P  G YK+N DASFL+    AGLGII+ +  GQVM +A    +N++ VDMAE  AAV+ L+L  +
Subjt:  LVEWTKGYVMAFREAGRSREKGRETICHERIVWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLELVRD

Query:  MGFDPSILETDSSRVCQLINRERENASELGMTIADALMAFPSYLQVLFGFTHREGNQAAHRLA
        +G  P++                E+ SE G  +  A   +   L   F F  REGN+AAH LA
Subjt:  MGFDPSILETDSSRVCQLINRERENASELGMTIADALMAFPSYLQVLFGFTHREGNQAAHRLA

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]1.7e-1734.91Show/hide
Query:  SGLVEWTKGYVMAFREAGRSREKGRETICHERI-VWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLEL
        S LV W++ Y+  ++ A RS           R+ +WR P     KVN DA+F  +   AG+G+I+RD  G V L+A        DVD  EG+A  + + L
Subjt:  SGLVEWTKGYVMAFREAGRSREKGRETICHERI-VWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLEL

Query:  VRDMGFDPSILETDSSRVCQLINRERENASELGMTIADALMAFPSYLQ-VLFGFTHREGNQAAHRLASV
          + GF    +ETDS R+  L+  +  + SE+G+  +   +   S+ + V F FTHR GN  AH LA +
Subjt:  VRDMGFDPSILETDSSRVCQLINRERENASELGMTIADALMAFPSYLQ-VLFGFTHREGNQAAHRLASV

XP_028115288.1 uncharacterized protein LOC114313136 isoform X3 [Camellia sinensis]3.7e-1735.62Show/hide
Query:  KGRETICHER---IVWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLELVRDMGFDPSILETDSSRVCQ
        K R   C+ R   + W AP NGW K+NFD +   +L   G+G+++R+ +G+VM + +       D D AE YAA K++EL RD+G     LE DS R+ +
Subjt:  KGRETICHER---IVWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLELVRDMGFDPSILETDSSRVCQ

Query:  LINRERENASELGMTIADALMAFPSYLQVLFGFTHREGNQAAHRLA
        ++  E E  SE G  +   +    S+ +       R+GN  AH LA
Subjt:  LINRERENASELGMTIADALMAFPSYLQVLFGFTHREGNQAAHRLA

TrEMBL top hitse value%identityAlignment
A0A6J1CDQ4 uncharacterized protein LOC1110105334.0e-1733.33Show/hide
Query:  NKARLQGAERPSGLVEWTKGYVMAFREAGRSREKGRETI------------CHERIVWRAPRNGWYKVNFDASFLSDLSKAGLG-IIVRDPMGQVMLSAA
        NK R++  +    L  W   Y+  F+    +     + +                 +W     G +K+  DASF S    AGLG II+RD  GQV+ SA 
Subjt:  NKARLQGAERPSGLVEWTKGYVMAFREAGRSREKGRETI------------CHERIVWRAPRNGWYKVNFDASFLSDLSKAGLG-IIVRDPMGQVMLSAA

Query:  FTKDNVRDVDMAEGYAAVKSLELVRDMGFDPSILETDSSRVCQLINRERENASELGMTIADALMAFPSYLQVLFGFTHREGNQAAHRLA
           ++V  VD AE  AAV+ L +  + G  P +LETDS R+  L  R++E  S+ G  I        + LQV + FT R GN  AH LA
Subjt:  FTKDNVRDVDMAEGYAAVKSLELVRDMGFDPSILETDSSRVCQLINRERENASELGMTIADALMAFPSYLQVLFGFTHREGNQAAHRLA

A0A6J1CIF1 uncharacterized protein LOC1110112375.9e-2946.63Show/hide
Query:  LVEWTKGYVMAFREAGRSREKGRETICHERIVWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLELVRD
        LVEW   YVM FREA  +   GR T   E ++W  P    YK+N DASFL+    AGLGII+R+  GQVM SA    +N++ VDMAE   AV+ L+L   
Subjt:  LVEWTKGYVMAFREAGRSREKGRETICHERIVWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLELVRD

Query:  MGFDPSILETDSSRVCQLINRERENASELGMTIADALMAFPSYLQVLFGFTHREGNQAAHRLA
        +G +P ILETDSSR+  L ++  E+ SE G  +  A   +   L   F F  REGN+AAH LA
Subjt:  MGFDPSILETDSSRVCQLINRERENASELGMTIADALMAFPSYLQVLFGFTHREGNQAAHRLA

A0A6J1DAR4 uncharacterized protein LOC1110189545.4e-2241.1Show/hide
Query:  LVEWTKGYVMAFREAGRSREKGRETICHERIVWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLELVRD
        LVEW   Y M FREA  +   GR T   E I+W+ P  G YK+N DASFL+    AGLGII+ +  GQVM +A    +N++ VDMAE  AAV+ L+L  +
Subjt:  LVEWTKGYVMAFREAGRSREKGRETICHERIVWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLELVRD

Query:  MGFDPSILETDSSRVCQLINRERENASELGMTIADALMAFPSYLQVLFGFTHREGNQAAHRLA
        +G  P++                E+ SE G  +  A   +   L   F F  REGN+AAH LA
Subjt:  MGFDPSILETDSSRVCQLINRERENASELGMTIADALMAFPSYLQVLFGFTHREGNQAAHRLA

A0A6J1DBJ7 uncharacterized protein LOC1110189738.0e-1834.91Show/hide
Query:  SGLVEWTKGYVMAFREAGRSREKGRETICHERI-VWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLEL
        S LV W++ Y+  ++ A RS           R+ +WR P     KVN DA+F  +   AG+G+I+RD  G V L+A        DVD  EG+A  + + L
Subjt:  SGLVEWTKGYVMAFREAGRSREKGRETICHERI-VWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLEL

Query:  VRDMGFDPSILETDSSRVCQLINRERENASELGMTIADALMAFPSYLQ-VLFGFTHREGNQAAHRLASV
          + GF    +ETDS R+  L+  +  + SE+G+  +   +   S+ + V F FTHR GN  AH LA +
Subjt:  VRDMGFDPSILETDSSRVCQLINRERENASELGMTIADALMAFPSYLQ-VLFGFTHREGNQAAHRLASV

A0A7J7GYW5 Uncharacterized protein2.1e-1836.99Show/hide
Query:  KGRETICHER---IVWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLELVRDMGFDPSILETDSSRVCQ
        K R   C+ R   + W AP NGW K+NFD +   +L   G+G+++R+ +G+VM + +       D D AE YAA K++EL RD+GF    LE DS R+ +
Subjt:  KGRETICHER---IVWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLELVRDMGFDPSILETDSSRVCQ

Query:  LINRERENASELGMTIADALMAFPSYLQVLFGFTHREGNQAAHRLA
         +  E E  SE G  +   + A  S+ +       R+GN  AH LA
Subjt:  LINRERENASELGMTIADALMAFPSYLQVLFGFTHREGNQAAHRLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.7e-0827.07Show/hide
Query:  IVWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLELVRDMGFDPSILETDSSRVCQLINRERENASELG
        + W+AP   W K N DA++  +  + G+G I+R+  G V+   A      ++V  AE  A   ++  +    +   I E+D+  +  L+N + +    L 
Subjt:  IVWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAVKSLELVRDMGFDPSILETDSSRVCQLINRERENASELG

Query:  MTIADALMAFPSYLQVLFGFTHREGNQAAHRLA
          + D       + +V F FT R GN+ A R+A
Subjt:  MTIADALMAFPSYLQVLFGFTHREGNQAAHRLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATCAGCCCGGAACAAAGCTCGTCTTCAAGGGGCTGAAAGGCCGAGTGGGCTAGTGGAATGGACTAAAGGGTATGTAATGGCTTTCCGTGAGGCTGGGAGGAGTAG
GGAGAAAGGTCGAGAGACGATCTGTCATGAGAGGATAGTGTGGCGGGCGCCGAGGAATGGCTGGTATAAGGTGAATTTTGATGCCTCTTTTCTGTCTGATTTGTCCAAGG
CTGGCCTAGGGATAATTGTGAGAGACCCTATGGGCCAAGTGATGCTTTCGGCGGCTTTCACTAAGGATAATGTGAGAGATGTCGACATGGCTGAAGGATATGCAGCTGTG
AAAAGTCTGGAGCTGGTGAGAGATATGGGTTTCGACCCATCAATTCTTGAGACGGACTCGAGTAGAGTTTGCCAGCTCATTAATCGAGAGCGCGAGAATGCTTCTGAGTT
AGGTATGACTATTGCAGATGCACTGATGGCTTTTCCTTCTTATTTGCAGGTATTGTTTGGTTTCACTCACCGTGAGGGGAATCAGGCGGCGCACCGATTGGCGAGCGTAC
ATGGAGGCATGAGGTGGGGGCTAAGCTATGCAAGTTCCGCTTCTACACCAACGGACGTGAAATGCAATCAGGGAAGGTTTTCTGTGTTCCTTTCCTTTGTGTTTGTGTTT
GCCTGTTGCGGATTACATTGTGGAGATTCTTGGTTGGAGGCCATGCATCTGAGCATTGGACCTTTTGCTTCTGGGATCAGTGGAAACTGTGGTGAATGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCATCAGCCCGGAACAAAGCTCGTCTTCAAGGGGCTGAAAGGCCGAGTGGGCTAGTGGAATGGACTAAAGGGTATGTAATGGCTTTCCGTGAGGCTGGGAGGAGTAG
GGAGAAAGGTCGAGAGACGATCTGTCATGAGAGGATAGTGTGGCGGGCGCCGAGGAATGGCTGGTATAAGGTGAATTTTGATGCCTCTTTTCTGTCTGATTTGTCCAAGG
CTGGCCTAGGGATAATTGTGAGAGACCCTATGGGCCAAGTGATGCTTTCGGCGGCTTTCACTAAGGATAATGTGAGAGATGTCGACATGGCTGAAGGATATGCAGCTGTG
AAAAGTCTGGAGCTGGTGAGAGATATGGGTTTCGACCCATCAATTCTTGAGACGGACTCGAGTAGAGTTTGCCAGCTCATTAATCGAGAGCGCGAGAATGCTTCTGAGTT
AGGTATGACTATTGCAGATGCACTGATGGCTTTTCCTTCTTATTTGCAGGTATTGTTTGGTTTCACTCACCGTGAGGGGAATCAGGCGGCGCACCGATTGGCGAGCGTAC
ATGGAGGCATGAGGTGGGGGCTAAGCTATGCAAGTTCCGCTTCTACACCAACGGACGTGAAATGCAATCAGGGAAGGTTTTCTGTGTTCCTTTCCTTTGTGTTTGTGTTT
GCCTGTTGCGGATTACATTGTGGAGATTCTTGGTTGGAGGCCATGCATCTGAGCATTGGACCTTTTGCTTCTGGGATCAGTGGAAACTGTGGTGAATGCTAA
Protein sequenceShow/hide protein sequence
MSSARNKARLQGAERPSGLVEWTKGYVMAFREAGRSREKGRETICHERIVWRAPRNGWYKVNFDASFLSDLSKAGLGIIVRDPMGQVMLSAAFTKDNVRDVDMAEGYAAV
KSLELVRDMGFDPSILETDSSRVCQLINRERENASELGMTIADALMAFPSYLQVLFGFTHREGNQAAHRLASVHGGMRWGLSYASSASTPTDVKCNQGRFSVFLSFVFVF
ACCGLHCGDSWLEAMHLSIGPFASGISGNCGEC