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Lag0025531 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025531
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr10:14551337..14551822
RNA-Seq ExpressionLag0025531
SyntenyLag0025531
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY85402.1 hypothetical protein Acr_04g0001400 [Actinidia rufa]1.9e-0656.86Show/hide
Query:  NPTLFTPNPYPTLP---QPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
        NP +   +P P +P   QPLAVKL+D+N+++WK QLLN V+ANGL  FLDG
Subjt:  NPTLFTPNPYPTLP---QPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
GFZ12741.1 UBX domain-containing protein [Actinidia rufa]2.7e-0544Show/hide
Query:  STTCPLSPIFYTTKFSRQHFSSPHNPTLFTPNP---YPTLPQPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
        S+T P  P   +          P NP +   +P    P++ QPLAVKL+D+N+++WK QLLN V+ANGL  FLDG
Subjt:  STTCPLSPIFYTTKFSRQHFSSPHNPTLFTPNP---YPTLPQPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
RVW56403.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]7.1e-0654.72Show/hide
Query:  NPT-LFTPN----PYPTLPQPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
        NPT +F+PN     YP+L QPL +KL++ N  LWKNQLLN ++ANGL  F++G
Subjt:  NPT-LFTPN----PYPTLPQPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
RVX22862.1 hypothetical protein CK203_008411 [Vitis vinifera]1.2e-0552.83Show/hide
Query:  NPT-LFTPN----PYPTLPQPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
        NPT +F+PN     YP+L QPL +KL++ N  LWKNQL+N ++ANGL  F++G
Subjt:  NPT-LFTPN----PYPTLPQPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]7.8e-1376.92Show/hide
Query:  SSPHNPTLFTPNPYPTLPQPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
        + P NP  F+ NP+PTLPQPL VKLNDNNFLLWKNQLLNAV+ANGL G+LDG
Subjt:  SSPHNPTLFTPNPYPTLPQPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
TrEMBL top hitse value%identityAlignment
A0A438F8X3 Retrovirus-related Pol polyprotein from transposon RE13.4e-0654.72Show/hide
Query:  NPT-LFTPN----PYPTLPQPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
        NPT +F+PN     YP+L QPL +KL++ N  LWKNQLLN ++ANGL  F++G
Subjt:  NPT-LFTPN----PYPTLPQPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
A0A438KNU0 Uncharacterized protein5.8e-0652.83Show/hide
Query:  NPT-LFTPN----PYPTLPQPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
        NPT +F+PN     YP+L QPL +KL++ N  LWKNQL+N ++ANGL  F++G
Subjt:  NPT-LFTPN----PYPTLPQPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
A0A6J1DQX7 uncharacterized protein LOC1110223153.8e-1376.92Show/hide
Query:  SSPHNPTLFTPNPYPTLPQPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
        + P NP  F+ NP+PTLPQPL VKLNDNNFLLWKNQLLNAV+ANGL G+LDG
Subjt:  SSPHNPTLFTPNPYPTLPQPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
A0A7J0EGI5 Uncharacterized protein9.0e-0756.86Show/hide
Query:  NPTLFTPNPYPTLP---QPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
        NP +   +P P +P   QPLAVKL+D+N+++WK QLLN V+ANGL  FLDG
Subjt:  NPTLFTPNPYPTLP---QPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
A0A7J0GPN0 UBX domain-containing protein1.3e-0544Show/hide
Query:  STTCPLSPIFYTTKFSRQHFSSPHNPTLFTPNP---YPTLPQPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
        S+T P  P   +          P NP +   +P    P++ QPLAVKL+D+N+++WK QLLN V+ANGL  FLDG
Subjt:  STTCPLSPIFYTTKFSRQHFSSPHNPTLFTPNP---YPTLPQPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCAGCAGCTTCTTCTTCTACCTCAGCCTTTGGACCGCTTACACAGTCTGTTGAAACTCCGACTACACCTAATACTACTCTTGTAGTAACCCCAATCACAGCCCC
AAAAACATCCCAGCGTGCTCAAACCTCAAATCCCCAATTTCAACCCCCTCATCTTTCTTTTCCCCAAAACCCAAATCCCACAAATCCATTACAGTCTCAACCATTTTTAT
CCTTCGAATCCAAACTATTTTCAGCCATATTATCCATCGAACTTCCCTCGACCACCTGCCCCTTATCCCCAATTTTTTACACCACAAAATTTTCCCGTCAACACTTCAGC
TCCCCTCATAATCCAACCTTATTTACTCCGAATCCCTACCCAACTTTACCTCAACCTCTTGCTGTCAAGTTGAATGATAACAACTTCCTCCTTTGGAAGAATCAGCTACT
GAACGCTGTCTTGGCCAACGGACTCCATGGGTTTCTTGATGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCAGCAGCTTCTTCTTCTACCTCAGCCTTTGGACCGCTTACACAGTCTGTTGAAACTCCGACTACACCTAATACTACTCTTGTAGTAACCCCAATCACAGCCCC
AAAAACATCCCAGCGTGCTCAAACCTCAAATCCCCAATTTCAACCCCCTCATCTTTCTTTTCCCCAAAACCCAAATCCCACAAATCCATTACAGTCTCAACCATTTTTAT
CCTTCGAATCCAAACTATTTTCAGCCATATTATCCATCGAACTTCCCTCGACCACCTGCCCCTTATCCCCAATTTTTTACACCACAAAATTTTCCCGTCAACACTTCAGC
TCCCCTCATAATCCAACCTTATTTACTCCGAATCCCTACCCAACTTTACCTCAACCTCTTGCTGTCAAGTTGAATGATAACAACTTCCTCCTTTGGAAGAATCAGCTACT
GAACGCTGTCTTGGCCAACGGACTCCATGGGTTTCTTGATGGTTGA
Protein sequenceShow/hide protein sequence
MASAASSSTSAFGPLTQSVETPTTPNTTLVVTPITAPKTSQRAQTSNPQFQPPHLSFPQNPNPTNPLQSQPFLSFESKLFSAILSIELPSTTCPLSPIFYTTKFSRQHFS
SPHNPTLFTPNPYPTLPQPLAVKLNDNNFLLWKNQLLNAVLANGLHGFLDG