CuGenDBv2

Gene ID	Lag0025540
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	scarecrow-like protein 8
Genome location	chr10:14803978..14804574
RNA-Seq Expression	Lag0025540
Synteny	Lag0025540
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605737.1 Scarecrow-like protein 8, partial [Cucurbita argyrosperma subsp. sororia]

5.2e-29

49.75

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Query:  YRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQS------------------------HAHP-----------------------------------
        YR QLS  AF+DP   QI RQIPSSLLGK NL DL S                         +HP                                   
Subjt:  YRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQS------------------------HAHP-----------------------------------

Query:  --------------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLISHTA-QNQKSISTSRTSSASSSCSSSTSSS
                      DLQNLDSEKKM+MNHRLQELEK+LLEDNDDDDGSD  SVITS+ SAWCET+YNLIS TA  NQK +STS T+SASSSCSSSTSSS
Subjt:  --------------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLISHTA-QNQKSISTSRTSSASSSCSSSTSSS

KAG7035643.1 Scarecrow-like protein 8, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.2e-29

49.75

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Query:  YRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQS------------------------HAHP-----------------------------------
        YR QLS  AF+DP   QI RQIPSSLLGK NL DL S                         +HP                                   
Subjt:  YRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQS------------------------HAHP-----------------------------------

Query:  --------------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLISHTA-QNQKSISTSRTSSASSSCSSSTSSS
                      DLQNLDSEKKM+MNHRLQELEK+LLEDNDDDDGSD  SVITS+ SAWCET+YNLIS TA  NQK +STS T+SASSSCSSSTSSS
Subjt:  --------------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLISHTA-QNQKSISTSRTSSASSSCSSSTSSS

XP_022995259.1 scarecrow-like protein 8 [Cucurbita maxima]

2.6e-28

49.25

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Query:  YRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQS------------------------HAHP-----------------------------------
        YR QLS  AF+DP   QI RQIPSSLLGK NL DL S                         +HP                                   
Subjt:  YRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQS------------------------HAHP-----------------------------------

Query:  --------------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLISHTA-QNQKSISTSRTSSASSSCSSSTSSS
                      DLQNLD EKKM+MNHRLQELEK+LLEDNDDDDGSD  SVITS+ SAWCET+YNLIS TA  NQK +STS T+SASSSCSSSTSSS
Subjt:  --------------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLISHTA-QNQKSISTSRTSSASSSCSSSTSSS

XP_023524891.1 scarecrow-like protein 8 [Cucurbita pepo subsp. pepo]

1.5e-28

49.25

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Query:  YRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQS------------------------HAHP-----------------------------------
        YR QLS  AF+DP   QI RQIPSSLLGK NL DL S                         +HP                                   
Subjt:  YRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQS------------------------HAHP-----------------------------------

Query:  --------------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLISHTA-QNQKSISTSRTSSASSSCSSSTSSS
                      DLQNL+SEKKM+MNHRLQELEK+LLEDNDDDDGSD  SVITS+ SAWCET+YNLIS TA  NQK +STS T+SASSSCSSSTSSS
Subjt:  --------------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLISHTA-QNQKSISTSRTSSASSSCSSSTSSS

XP_023534055.1 scarecrow-like protein 8 [Cucurbita pepo subsp. pepo]

1.5e-28

49.25

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Query:  YRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQS------------------------HAHP-----------------------------------
        YR QLS  AF+DP   QI RQIPSSLLGK NL DL S                         +HP                                   
Subjt:  YRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQS------------------------HAHP-----------------------------------

Query:  --------------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLISHTA-QNQKSISTSRTSSASSSCSSSTSSS
                      DLQNL+SEKKM+MNHRLQELEK+LLEDNDDDDGSD  SVITS+ SAWCET+YNLIS TA  NQK +STS T+SASSSCSSSTSSS
Subjt:  --------------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLISHTA-QNQKSISTSRTSSASSSCSSSTSSS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TML4 Scarecrow-like protein 8

3.1e-27

50.75

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Query:  AYRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQSH-----------------------AHP-----------------------------------
        AYR QLS  +FIDP A QI RQIPSSLLGK NL DL SH                        HP                                   
Subjt:  AYRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQSH-----------------------AHP-----------------------------------

Query:  -------------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLI----SHTAQNQKSISTSRTSSASSSCSSSTSS
                     DLQ+L+SEKKM MNHRLQELEKELLEDNDDDDGSD VSVITS+NSAWCETIYNLI    S TAQN      S TSSASSSCSSSTSS
Subjt:  -------------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLI----SHTAQNQKSISTSRTSSASSSCSSSTSS

Query:  S
        S
Subjt:  S

A0A6J1H2B4 scarecrow-like protein 8

1.3e-28

49.25

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Query:  YRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQS------------------------HAHP-----------------------------------
        YR QLS  AF+DP   QI RQIPSSLLGK NL DL S                         +HP                                   
Subjt:  YRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQS------------------------HAHP-----------------------------------

Query:  --------------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLISHTA-QNQKSISTSRTSSASSSCSSSTSSS
                      DLQNLDSEKK +MNHRLQELEK+LLEDNDDDDGSD  SVITS+ SAWCET+YNLIS TA  NQK +STS T+SASSSCSSSTSSS
Subjt:  --------------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLISHTA-QNQKSISTSRTSSASSSCSSSTSSS

A0A6J1I7F6 scarecrow-like protein 8

6.3e-28

51.55

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Query:  YRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQ--------------------SHAHP---------------------------------------
        YR QLS  AF+DP A QI RQIPSSLLGK NL DLQ                    + AHP                                       
Subjt:  YRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQ--------------------SHAHP---------------------------------------

Query:  ---------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLISHT-AQNQKSISTSRTSSASSSCSSSTSSS
                 DLQ+LDSEKKMIMNHRLQELEKELLED DDDDGSD VSVIT++NS WCETIYNLIS T AQN+     S TSSASSSCSSSTSSS
Subjt:  ---------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLISHT-AQNQKSISTSRTSSASSSCSSSTSSS

A0A6J1K574 scarecrow-like protein 8

1.3e-28

49.25

Show/hide

Query:  YRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQS------------------------HAHP-----------------------------------
        YR QLS  AF+DP   QI RQIPSSLLGK NL DL S                         +HP                                   
Subjt:  YRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQS------------------------HAHP-----------------------------------

Query:  --------------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLISHTA-QNQKSISTSRTSSASSSCSSSTSSS
                      DLQNLD EKKM+MNHRLQELEK+LLEDNDDDDGSD  SVITS+ SAWCET+YNLIS TA  NQK +STS T+SASSSCSSSTSSS
Subjt:  --------------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLISHTA-QNQKSISTSRTSSASSSCSSSTSSS

E5GBC7 GRAS family transcription factor

3.1e-27

50.75

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Query:  AYRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQSH-----------------------AHP-----------------------------------
        AYR QLS  +FIDP A QI RQIPSSLLGK NL DL SH                        HP                                   
Subjt:  AYRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQSH-----------------------AHP-----------------------------------

Query:  -------------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLI----SHTAQNQKSISTSRTSSASSSCSSSTSS
                     DLQ+L+SEKKM MNHRLQELEKELLEDNDDDDGSD VSVITS+NSAWCETIYNLI    S TAQN      S TSSASSSCSSSTSS
Subjt:  -------------DLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLI----SHTAQNQKSISTSRTSSASSSCSSSTSS

Query:  S
        S
Subjt:  S

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G52510.1 SCARECROW-like 8

2.8e-04

42.17

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Query:  LQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLISHTAQNQKSISTSRTSSASSSCSSSTSSS
        +QN   E + ++N  L+ELEK+LL+D+D+  G D VSVIT++NS W   I NL++        +S S +SS+SSS  S+ S++
Subjt:  LQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLISHTAQNQKSISTSRTSSASSSCSSSTSSS

Sequences

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CDS sequence

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ATGAGGGCTTACAGATTGCAGCTCTCCGATGTCGCCTTCATAGATCCGCTCGCTGCTCAGATCACTCGCCAAATCCCTTCTTCCCTCCTCGGCAAATGGAATCTCGTCGA
TCTTCAGTCCCACGCCCACCCGGATTTGCAGAATCTCGACTCCGAGAAGAAGATGATCATGAACCACCGCCTTCAGGAGTTGGAGAAAGAGCTTCTTGAAGATAACGACG
ATGACGACGGAAGCGATGTTGTCTCTGTGATTACCAGCACGAATAGCGCTTGGTGTGAGACAATTTACAATCTCATCAGTCACACCGCGCAGAATCAGAAGTCGATTTCA
ACTTCGCGGACTTCCTCTGCTTCCTCGTCCTGTTCTTCGTCTACGTCCTCCTCCCGTCGCCGGCGTCGGAAAGGGAAAATGAGGAGCTCTTCTTTATAA

mRNA sequence

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Protein sequence

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MRAYRLQLSDVAFIDPLAAQITRQIPSSLLGKWNLVDLQSHAHPDLQNLDSEKKMIMNHRLQELEKELLEDNDDDDGSDVVSVITSTNSAWCETIYNLISHTAQNQKSIS
TSRTSSASSSCSSSTSSSRRRRRKGKMRSSSL

Lag0025540 (gene) of Sponge gourd (AG-4) v1 genome