CuGenDBv2

Gene ID	Lag0025551
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotransposon gag protein
Genome location	chr10:14967391..14972280
RNA-Seq Expression	Lag0025551
Synteny	Lag0025551
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]

6.1e-28

68.18

Show/hide

Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL
        +SMA  EEENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HSR+PSRMKRK SV INTEGSL VKP  
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPANEG
        II TNP NEG
Subjt:  IILTNPANEG

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]

3.6e-28

65.22

Show/hide

Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HSR+PSRMKRK SV INTEGSL VKP  
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPANEGSDQAM
        II TNP NEG ++ +
Subjt:  IILTNPANEGSDQAM

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]

8.0e-28

65.22

Show/hide

Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HSR+PSRMKRK SV INTEGSL VKP  
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPANEGSDQAM
        II TNP NEG  + +
Subjt:  IILTNPANEGSDQAM

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]

4.7e-28

61.16

Show/hide

Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL
        +SMA  EEENQC MST TR SAF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K++SR+PSR+KRK S+ INTEGSL VKP  
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPANEGSDQAMTKIRAF
        II TNP NEG ++ + + + F
Subjt:  IILTNPANEGSDQAMTKIRAF

TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]

8.0e-28

64.35

Show/hide

Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HSR+PSRMKRK S+ INT+GSL VKP L
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPANEGSDQAM
        II TNP NEG ++ +
Subjt:  IILTNPANEGSDQAM

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZJ7 Retrotransposon gag protein

3.0e-28

68.18

Show/hide

Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL
        +SMA  EEENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HSR+PSRMKRK SV INTEGSL VKP  
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPANEG
        II TNP NEG
Subjt:  IILTNPANEG

A0A5A7TQ06 Retrotransposon gag protein

1.7e-28

65.22

Show/hide

Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HSR+PSRMKRK SV INTEGSL VKP  
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPANEGSDQAM
        II TNP NEG ++ +
Subjt:  IILTNPANEGSDQAM

A0A5A7U974 Retrotransposon gag protein

2.3e-28

61.16

Show/hide

Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL
        +SMA  EEENQC MST TR SAF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K++SR+PSR+KRK S+ INTEGSL VKP  
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPANEGSDQAMTKIRAF
        II TNP NEG ++ + + + F
Subjt:  IILTNPANEGSDQAMTKIRAF

A0A5D3BBF9 Gag protease polyprotein

3.9e-28

65.22

Show/hide

Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HSR+PSRMKRK SV INTEGSL VKP  
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPANEGSDQAM
        II TNP NEG  + +
Subjt:  IILTNPANEGSDQAM

A0A5D3D5Q0 Gag protease polyprotein

3.9e-28

64.35

Show/hide

Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HSR+PSRMKRK S+ INT+GSL VKP L
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNPANEGSDQAM
        II TNP NEG ++ +
Subjt:  IILTNPANEGSDQAM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATA
GTAGAATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGA
TCTGATCAAGCCATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGATCCTAGCCCACACGAGCTTAAAAGGTTCTTCGC
TGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCTAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCC
AAGTTCGAGGGTTCTCAGTTGCACAACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGT
TCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTGCGTTGCAGTTCCTTCTTTCCAAGGTCGAAGGTTCTCACTCGCTGCGTTGCAGT
TCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTTGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCT
CCGCTGCTGCAGTTCATTCTTCCAAGTTCGAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAATTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAATTCCTT
CCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTTTCACGCGCTTCGTTGCATTTCCTTCCCCCAAGTTCGAAGGTTCTCACGC
GCTTCGCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCACGCACTTTGCTGCAGTTCCTTCTCCCAAATT
CGAAGGTTCTCACGCATTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACATCCCTTCGGAGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCG
GCAGTTCCTTCCTCCAAGTTCGAAGGTCCTCACGCGGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAGGTTCTCACACGCTTCGCTGGAGTTCCTTCCTCCAAGTTCGAG
GGTTCTCACGCGCTTCGCTGCAGTTCCTCCTCCAAGTTCGAGGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAGGTTCTCACGCGCTTCGCTGCAGTTC
CTTCCCCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCT
CACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGTTCCTTCCCCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCAAGTTCAAAGGTTCTCACG
CACTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCACAAGTTCGAAGGTTCTCACGCGCTGCTGCAGCTCCTTCCTCCAA
GTTCGAAGGTTCCCTCACACGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTACTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTC
CTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAATGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGGAGGCGCTTCTCTC
CACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACTTCTCCAAGTTCAAAGGTGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCA
CTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAA
TGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGTAGTTGACGGCGTCCGATGCGCTTCATCTTCAAATGTTGGCAGAAACTACAGTCATCAAAG
TGACTGGTCTAGACAAGTGGTGAAGTCATTGCAATTGAATCTGATGACGACCGTTGTAGGCGAGTCGGGTCTGGTGACCACCCCTGCAGGTTACTCAGATCACCCAGTAA
AATGGGGACTGGAGTGCATCACTGTAGGCAAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAGTAAAATGGGGACTGGTCTAGCAGGAGTGAAATCATTGCAA
GCGAATTTGAGGCAGAGAGGGCAGAGTCCAGAGCATTCTCCCAAGATCCATAGTCGTCAGAATCCAAAGAGTCCAGAGAATTCAGAGATCCGAGATTCAAAATTCAAAGG
ATTCAAGACTCAGAAGATTAGAAGACTAGAAGACTCTAAAAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGGATC
AACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
SDQAMTKIRAFKCKSSLSQEPKLHDDPSPHELKRFFAAVPSLQVRGSLHCTLLRCSFSKFEGSSLYPAALFLLQVRGFSVAQLLRCSSSKCEGSYVVRCCIVPSSLKFDG
SHAALLEFLLPKFEGSHALRCSSFFPRSKVLTRCVAVLSPQVRRFTHFAAVPSPKFEGSHALRCSSFLQVRRFSAAAVHSSKFEGRRFSRAALQFFLPKFEGSRTSLQFL
PPSSKVLTRFVQFLPPNSKVFTRFVAFPSPKFEGSHALRCNSFPKFEGSHALRAVPSSKFEGSRTLLQFLLPNSKVLTHFAAVPSSKFEGSHIPSEQFLPPSSKVLTRFA
AVPSSKFEGPHAASLQFLPPSSRFSHASLEFLPPSSRVLTRFAAVPPPSSRVLTRFAAVPSSKFEVLTRFAAVPSPKFEGSHIASLRSFLQVRRFSRASLCNSFPKFEGS
HALRAVPSSKFEVPSPKFEGSHALRCNSFLQVQRFSRTSLQFLPPSSKVLTRFAAVPSHKFEGSHALLQLLPPSSKVPSHASLAPSPSSKALLSTAPSPSSKALLSVATF
LQVRRFSHALLQFLPPSSNVPSRASLAPSPSSEALLSTAPSPSSKALLSVATSPSSKVLLSTAPSPSSKALLSTAPSPSSKVLLSTPLFEGSPLRFSFSKFEGSPLLLFK
CLAAVDVLVPLHLQMLVVDGVRCASSSNVGRNYSHQSDWSRQVVKSLQLNLMTTVVGESGLVTTPAGYSDHPVKWGLECITVGKSGDYPCRLLRSPSKMGTGLAGVKSLQ
ANLRQRGQSPEHSPKIHSRQNPKSPENSEIRDSKFKGFKTQKIRRLEDSKKRSTSQPTDQEDQQVSRPIIQEDQQANKPIQQIIKPTG

Lag0025551 (gene) of Sponge gourd (AG-4) v1 genome