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Lag0025562 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025562
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr10:15254359..15261072
RNA-Seq ExpressionLag0025562
SyntenyLag0025562
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ERM98543.1 hypothetical protein AMTR_s04311p00004950, partial [Amborella trichopoda]3.9e-1575Show/hide
Query:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC
        +T+ +TSSNHAEI+ IHEASRECVWLRSMTQHI  TCGL+SNK+ PT LYEDN  C
Subjt:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC

KAA0067250.1 Pol [Cucumis melo var. makuwa]1.9e-1473.21Show/hide
Query:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC
        +T+T+TSSNHAEI+ IHE SRECVWLRSMT HI ETCGLS +K+ PT L+EDNT C
Subjt:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC

KAF7137709.1 hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii]3.9e-1575Show/hide
Query:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC
        +T+T+TSSNH+EI+ IHE SRECVWLRSM QHI E CGLSS KDCPT LYEDN  C
Subjt:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC

KAF7149083.1 hypothetical protein RHSIM_Rhsim03G0114900 [Rhododendron simsii]1.9e-1473.21Show/hide
Query:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC
        +T+T+TSSNH+EI+ IHE SRECVWLRSM Q+I E CGLSS KDCPT LYEDN  C
Subjt:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC

XP_030479032.1 LOW QUALITY PROTEIN: uncharacterized protein LOC115696262 [Cannabis sativa]3.9e-1575Show/hide
Query:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC
        +T+ +TSSNHAEI+ IHEASRECVWLRSMTQHI  TCGL+SNK+ PT LYEDN  C
Subjt:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC

TrEMBL top hitse value%identityAlignment
A0A1Q3BIA4 Uncharacterized protein (Fragment)1.6e-1471.43Show/hide
Query:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC
        +T+T+TSSNH+EI+TIHEASREC+WLRSM QHI E+CGLSS K+ PT +YEDN  C
Subjt:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC

A0A5B7ARW7 Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment)9.4e-1571.43Show/hide
Query:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC
        +T+T+TSSNH+EI+ ++EASREC+WLRSM QHI E+CGLSS KD PTTLYEDN  C
Subjt:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC

A0A5D3CKU4 Pol9.4e-1573.21Show/hide
Query:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC
        +T+T+TSSNHAEI+ IHE SRECVWLRSMT HI ETCGLS +K+ PT L+EDNT C
Subjt:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC

A0A5D3DD63 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-1473.21Show/hide
Query:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC
        +T+T+TSSNHAEI+ IHEASRECVWLRSMT +I ETCGLS +K+ PT L+EDNT C
Subjt:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC

U5CXL6 Uncharacterized protein (Fragment)1.9e-1575Show/hide
Query:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC
        +T+ +TSSNHAEI+ IHEASRECVWLRSMTQHI  TCGL+SNK+ PT LYEDN  C
Subjt:  ETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTTGATGACAACTACTGTTGGAGAATCTAGTGACCACCCCTGCAAGATACTAGACTGGTCTAGACAAGAAGTGAAGTCACTGCAAATGAATCTGATGAAGACCAT
TGTAGGCGAGTATGGTGACCACCCCTACAGGAAGTCATTAAAAGTGACTGGTCTAGACAGGAGATCAACACCATCAAGGCTCCACTACCTACAGGCGTGCGATGGAAAGG
TCGTAGCTAGATTCGTGTGGCAAGTTGCTGGAGGCTCATGGATGGCTAGAGTTTGTGATTGTGGGTTCAGCGAATGCCTAGAGTTCGTGGCTAAGCTCGCGATGAGCTGC
TCGGCGTACGGGCTATGCGTCCAAGCTGTCGGTGGAGTTGAGACAATAACGTCTACTTCCTCAAACCATGCTGAGATCATGACAATTCATGAGGCTAGTCGAGAATGTGT
ATGGCTAAGATCAATGACTCAACACATTTGTGAAACATGCGGATTGTCCTCTAACAAAGATTGTCCAACAACGTTATATGAAGACAATACAACATGCAAACCCCTATCTC
CCTCTCCTTGTGCTTGCCGTGAAAACCCACCCCCTTGCCGGAGATCGGGCGTCACTACCGCCCAGCCCGACCCTCACGCCGTCAGCCAGCTGTTCGTCGCGCCGCCCTTC
CTTCGCGCGATTCCTCTCTCTCTTCTCGTGGGTTGTTGTCTGTGGCTGTGTGTGTGTGTGTGTGTGGGTGTGTGTGGCCGTGAGAACCCATCCCCGCCACAGCCGCCTCG
ACGCGCCATCGTCGCTGCGTTTCCTCTCTGTTTTGTGGGTTTCAAGATCTTGCGTGGGCAGCATCTTAAAGTATCGTTCCTCGCGTTCTCGGCTCTGTCCAGCAGCATTT
TCGGGAGTTTTCGATGTCTTTTGGCGTTTTCGCTGTTGTCCAACGCCGTCTTTGCTCAGTTCATGGGTGTTTCGTCGTCGCTTAGCGATTCCGGAGCTGGAAATTTTAAG
TTAGCGTTGATTTTCTGTTATGCTACGCCGTCTAAGTGTTCGATTGAGTTCGAAACACTTCAGTTTGATCACCCACTGCCCAAGGAGCGTTCTAACACGCTATTCAAGGC
TTTAAGTTGTAGTGCCCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTTTGATGACAACTACTGTTGGAGAATCTAGTGACCACCCCTGCAAGATACTAGACTGGTCTAGACAAGAAGTGAAGTCACTGCAAATGAATCTGATGAAGACCAT
TGTAGGCGAGTATGGTGACCACCCCTACAGGAAGTCATTAAAAGTGACTGGTCTAGACAGGAGATCAACACCATCAAGGCTCCACTACCTACAGGCGTGCGATGGAAAGG
TCGTAGCTAGATTCGTGTGGCAAGTTGCTGGAGGCTCATGGATGGCTAGAGTTTGTGATTGTGGGTTCAGCGAATGCCTAGAGTTCGTGGCTAAGCTCGCGATGAGCTGC
TCGGCGTACGGGCTATGCGTCCAAGCTGTCGGTGGAGTTGAGACAATAACGTCTACTTCCTCAAACCATGCTGAGATCATGACAATTCATGAGGCTAGTCGAGAATGTGT
ATGGCTAAGATCAATGACTCAACACATTTGTGAAACATGCGGATTGTCCTCTAACAAAGATTGTCCAACAACGTTATATGAAGACAATACAACATGCAAACCCCTATCTC
CCTCTCCTTGTGCTTGCCGTGAAAACCCACCCCCTTGCCGGAGATCGGGCGTCACTACCGCCCAGCCCGACCCTCACGCCGTCAGCCAGCTGTTCGTCGCGCCGCCCTTC
CTTCGCGCGATTCCTCTCTCTCTTCTCGTGGGTTGTTGTCTGTGGCTGTGTGTGTGTGTGTGTGTGGGTGTGTGTGGCCGTGAGAACCCATCCCCGCCACAGCCGCCTCG
ACGCGCCATCGTCGCTGCGTTTCCTCTCTGTTTTGTGGGTTTCAAGATCTTGCGTGGGCAGCATCTTAAAGTATCGTTCCTCGCGTTCTCGGCTCTGTCCAGCAGCATTT
TCGGGAGTTTTCGATGTCTTTTGGCGTTTTCGCTGTTGTCCAACGCCGTCTTTGCTCAGTTCATGGGTGTTTCGTCGTCGCTTAGCGATTCCGGAGCTGGAAATTTTAAG
TTAGCGTTGATTTTCTGTTATGCTACGCCGTCTAAGTGTTCGATTGAGTTCGAAACACTTCAGTTTGATCACCCACTGCCCAAGGAGCGTTCTAACACGCTATTCAAGGC
TTTAAGTTGTAGTGCCCGTTAG
Protein sequenceShow/hide protein sequence
MILMTTTVGESSDHPCKILDWSRQEVKSLQMNLMKTIVGEYGDHPYRKSLKVTGLDRRSTPSRLHYLQACDGKVVARFVWQVAGGSWMARVCDCGFSECLEFVAKLAMSC
SAYGLCVQAVGGVETITSTSSNHAEIMTIHEASRECVWLRSMTQHICETCGLSSNKDCPTTLYEDNTTCKPLSPSPCACRENPPPCRRSGVTTAQPDPHAVSQLFVAPPF
LRAIPLSLLVGCCLWLCVCVCVGVCGRENPSPPQPPRRAIVAAFPLCFVGFKILRGQHLKVSFLAFSALSSSIFGSFRCLLAFSLLSNAVFAQFMGVSSSLSDSGAGNFK
LALIFCYATPSKCSIEFETLQFDHPLPKERSNTLFKALSCSAR