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Lag0025601 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025601
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:16009779..16010147
RNA-Seq ExpressionLag0025601
SyntenyLag0025601
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.4e-2458.33Show/hide
Query:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN
        +S+TT +EENQC  ST TR SAF+ LS+ST +K + STS FDRLK+ NDQ QR+M +LKVK F E + D  + S VPSRMKR  SV INTE GSL VKP 
Subjt:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN

Query:  LVILTNPANEGSDQDHDKDK
         +I TNP NEG ++  D++K
Subjt:  LVILTNPANEGSDQDHDKDK
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-2357.5Show/hide
Query:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN
        +SM T +EENQC  ST  R SAF+RLS+ST +K + STS FDRLK+ NDQ QR+M +LK K F E + D  + S VPSRMKR  SV INTE GSL VKP 
Subjt:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN

Query:  LVILTNPANEGSDQDHDKDK
         +I TNP NEG ++  D++K
Subjt:  LVILTNPANEGSDQDHDKDK
KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]3.7e-2357.5Show/hide
Query:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN
        +SM T +EENQC  ST  R SAF+RLS+ST +K + STS FDRLK+ NDQ QR+M +LK K F E + D  + S VPSRMKR  SV INTE GSL VKP 
Subjt:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN

Query:  LVILTNPANEGSDQDHDKDK
         +I TNP NEG  +  D++K
Subjt:  LVILTNPANEGSDQDHDKDK
KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.8e-2355.74Show/hide
Query:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN
        +SM T +EENQC  ST TR SAF+RLS+S  +K + STS FDRLK+ NDQ QR+M +LK K F E + D  + S VPSR+KR  S+ INTE GSL VKP 
Subjt:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN

Query:  LVILTNPANEGSDQDHDKDKDF
         +I TNP NEG ++  D++K F
Subjt:  LVILTNPANEGSDQDHDKDKDF
TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]3.7e-2356.67Show/hide
Query:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN
        +SM T +EENQC  ST  R SAF+RLS+ST +K + STS FDRLK+ NDQ QR+M +LK K F E + D  + S VPSRMKR  S+ INT+ GSL VKP 
Subjt:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN

Query:  LVILTNPANEGSDQDHDKDK
        L+I TNP NEG ++  D++K
Subjt:  LVILTNPANEGSDQDHDKDK
TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein3.6e-2458.33Show/hide
Query:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN
        +S+TT +EENQC  ST TR SAF+ LS+ST +K + STS FDRLK+ NDQ QR+M +LKVK F E + D  + S VPSRMKR  SV INTE GSL VKP 
Subjt:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN

Query:  LVILTNPANEGSDQDHDKDK
         +I TNP NEG ++  D++K
Subjt:  LVILTNPANEGSDQDHDKDK
A0A5A7TQ06 Retrotransposon gag protein8.0e-2457.5Show/hide
Query:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN
        +SM T +EENQC  ST  R SAF+RLS+ST +K + STS FDRLK+ NDQ QR+M +LK K F E + D  + S VPSRMKR  SV INTE GSL VKP 
Subjt:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN

Query:  LVILTNPANEGSDQDHDKDK
         +I TNP NEG ++  D++K
Subjt:  LVILTNPANEGSDQDHDKDK
A0A5A7U974 Retrotransposon gag protein2.3e-2355.74Show/hide
Query:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN
        +SM T +EENQC  ST TR SAF+RLS+S  +K + STS FDRLK+ NDQ QR+M +LK K F E + D  + S VPSR+KR  S+ INTE GSL VKP 
Subjt:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN

Query:  LVILTNPANEGSDQDHDKDKDF
         +I TNP NEG ++  D++K F
Subjt:  LVILTNPANEGSDQDHDKDKDF
A0A5D3BBF9 Gag protease polyprotein1.8e-2357.5Show/hide
Query:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN
        +SM T +EENQC  ST  R SAF+RLS+ST +K + STS FDRLK+ NDQ QR+M +LK K F E + D  + S VPSRMKR  SV INTE GSL VKP 
Subjt:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN

Query:  LVILTNPANEGSDQDHDKDK
         +I TNP NEG  +  D++K
Subjt:  LVILTNPANEGSDQDHDKDK
A0A5D3D5Q0 Gag protease polyprotein1.8e-2356.67Show/hide
Query:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN
        +SM T +EENQC  ST  R SAF+RLS+ST +K + STS FDRLK+ NDQ QR+M +LK K F E + D  + S VPSRMKR  S+ INT+ GSL VKP 
Subjt:  MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPN

Query:  LVILTNPANEGSDQDHDKDK
        L+I TNP NEG ++  D++K
Subjt:  LVILTNPANEGSDQDHDKDK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGACCACATCAAAAGAAGAAAATCAATGTTCGGCGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATTGAGGAAAAGTCAGTCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAGCAAACGATCAACCTCAAAGAAAGATGGATAACTTAAAGGTGAAATTGTTCGATGAAGTAAGTTGTGACAAGAATCTTCAAA
GTATTGTCCCGTCACGAATGAAAAGGAACTTCTCTGTTCTCATAAATACAGAAGCTGGTTCCTTGAAGGTGAAGCCAAATCTCGTTATCTTGACCAATCCTGCAAATGAA
GGATCTGATCAAGACCATGATAAAGATAAGGACTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGACCACATCAAAAGAAGAAAATCAATGTTCGGCGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATTGAGGAAAAGTCAGTCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAGCAAACGATCAACCTCAAAGAAAGATGGATAACTTAAAGGTGAAATTGTTCGATGAAGTAAGTTGTGACAAGAATCTTCAAA
GTATTGTCCCGTCACGAATGAAAAGGAACTTCTCTGTTCTCATAAATACAGAAGCTGGTTCCTTGAAGGTGAAGCCAAATCTCGTTATCTTGACCAATCCTGCAAATGAA
GGATCTGATCAAGACCATGATAAAGATAAGGACTTTTAA
Protein sequenceShow/hide protein sequence
MSMTTSKEENQCSASTSTRPSAFQRLSVSTLRKSQSSTSVFDRLKVANDQPQRKMDNLKVKLFDEVSCDKNLQSIVPSRMKRNFSVLINTEAGSLKVKPNLVILTNPANE
GSDQDHDKDKDF