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Lag0025606 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025606
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:16122591..16123037
RNA-Seq ExpressionLag0025606
SyntenyLag0025606
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_042954689.1 uncharacterized protein LOC122291107 [Carya illinoinensis]2.1e-1233.77Show/hide
Query:  MHVDAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKS
        +++D A   E    GIGVVL+DQ  ++ +A  +     S V   +A+A+L G+++  Q  V ++ + +DCL L++ L     C+ D A I+ DI+RL + 
Subjt:  MHVDAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKS

Query:  FQLLKFYHVNRDFNVLAHTLAR-AGLYSTSNVWYS------NYPDWMVRLAHCE
        FQ +K  HVNR  N++A+ LAR   L     +W+       N   W+ +LA C+
Subjt:  FQLLKFYHVNRDFNVLAHTLAR-AGLYSTSNVWYS------NYPDWMVRLAHCE

XP_042962672.1 uncharacterized protein LOC122296942 [Carya illinoinensis]3.2e-1334.42Show/hide
Query:  MHVDAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKS
        +++D A   E    GIGVVL+DQ  ++ +A  +     SS    +A+A+L G+++  Q  V ++ + +DCL L++ L     C+ D A I+ DI RL   
Subjt:  MHVDAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKS

Query:  FQLLKFYHVNRDFNVLAHTLAR-AGLYSTSNVWYSNYPD------WMVRLAHCE
        FQ ++  HVNR  N++AH LAR A L     +W+   P       W+ +LA C+
Subjt:  FQLLKFYHVNRDFNVLAHTLAR-AGLYSTSNVWYSNYPD------WMVRLAHCE

XP_042964568.1 uncharacterized protein LOC122298775 [Carya illinoinensis]1.1e-1335.06Show/hide
Query:  MHVDAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKS
        +++D A   E    GIGVVL+DQ  ++ +A  +     SS    KA+A+L G+++  Q  V ++ + +DCL L++ L     C+ D A I+ DI RL   
Subjt:  MHVDAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKS

Query:  FQLLKFYHVNRDFNVLAHTLAR-AGLYSTSNVWYSNYPD------WMVRLAHCE
        FQ ++  HVNR  N++AH LAR A L     +W+   P       W+ +LA C+
Subjt:  FQLLKFYHVNRDFNVLAHTLAR-AGLYSTSNVWYSNYPD------WMVRLAHCE

XP_042969199.1 uncharacterized protein LOC122301911 [Carya illinoinensis]1.8e-1134.44Show/hide
Query:  DAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKSFQL
        DAAC L + + G+GVVL++   ++ +A  +     S     +A+A+L G+++  Q  V +L + +DCL L++ L     C+ D A I+ DI RL  +FQ 
Subjt:  DAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKSFQL

Query:  LKFYHVNRDFNVLAHTLAR-AGLYSTSNVWYSNYPD------WMVRLAHCE
        +K  HVNR  N++AH LAR   L +   +W+   P       W+ +LA C+
Subjt:  LKFYHVNRDFNVLAHTLAR-AGLYSTSNVWYSNYPD------WMVRLAHCE

XP_042980029.1 uncharacterized protein LOC122310214 [Carya illinoinensis]1.4e-1133.77Show/hide
Query:  MHVDAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKS
        +++D A   E    GIGVVL+DQ  ++ +A  +     SS    +A+A+L G+++  Q  V ++ + +DCL L++ L     C+ D A I+ DI RL   
Subjt:  MHVDAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKS

Query:  FQLLKFYHVNRDFNVLAHTLAR-AGLYSTSNVWYSNYPD------WMVRLAHCE
        F+ +K  HVNR  N++AH LAR A L     +W+   P       W+ + A C+
Subjt:  FQLLKFYHVNRDFNVLAHTLAR-AGLYSTSNVWYSNYPD------WMVRLAHCE

TrEMBL top hitse value%identityAlignment
A0A1R3HC77 Reverse transcriptase1.9e-1129.86Show/hide
Query:  MHVDAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKS
        ++ D   +++     +GVVL+D   Q+  +  +     + V+ ++ +A+  G+ +A+ N +++L + SDCL  I  + +      DSA +I +I+    S
Subjt:  MHVDAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKS

Query:  FQLLKFYHVNRDFNVLAHTLARAGLYSTSN-VWYSNYPDWMVRL
        F L  F HV R+ NVLAH++A+  +   +N VWY   P ++V L
Subjt:  FQLLKFYHVNRDFNVLAHTLARAGLYSTSN-VWYSNYPDWMVRL

A0A287TRG6 Reverse transcriptase domain-containing protein8.9e-0932.06Show/hide
Query:  MHVDAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKS
        ++VDAA   +    G GVVL+D      +++ +G   F +   A+AMAV  G+  A      R+ + SDCL+ I  +T     +     +I DI  +   
Subjt:  MHVDAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKS

Query:  FQLLKFYHVNRDFNVLAHTLARAGLYSTSNV
        FQ   F    R +NV+AH LAR    S+ N+
Subjt:  FQLLKFYHVNRDFNVLAHTLARAGLYSTSNV

A0A2I4ERH4 uncharacterized protein LOC1089920108.9e-0928.26Show/hide
Query:  MHVDAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKS
        ++VD A   +    GIG VL+D   ++ +A         +V   + +A+L G+++     +  L+I SD L +++   R  + +     +I ++ +L   
Subjt:  MHVDAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKS

Query:  FQLLKFYHVNRDFNVLAHTLARAGL-YSTSNVWYSNYP
        FQ  +  HVNR  N++ HTLA+ GL  S  ++W+ +YP
Subjt:  FQLLKFYHVNRDFNVLAHTLARAGL-YSTSNVWYSNYP

A0A2I4FVF0 uncharacterized protein LOC1090023663.0e-0930.5Show/hide
Query:  MHVDAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKS
        ++VD A   +    GIG++L+D+   +  A  +  G  +S    +A A+L G++   Q  V +L + +DCL L++ L      + D A ++ DI R+ + 
Subjt:  MHVDAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKS

Query:  FQLLKFYHVNRDFNVLAHTLAR-AGLYSTSNVWYSNYPDWM
        FQ ++  HVNR  N++AH LAR A       +W+ + P ++
Subjt:  FQLLKFYHVNRDFNVLAHTLAR-AGLYSTSNVWYSNYPDWM

J7G0Q7 Non-ltr retroelement reverse transcriptase3.0e-0925.69Show/hide
Query:  MHVDAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKS
        ++ D A + +D  +G G +++D+   L +A  +      S L A+ +A+  G+ +  +  ++ + + SDCL  I +L   +RC+     ++ DI+     
Subjt:  MHVDAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKS

Query:  FQLLKFYHVNRDFNVLAHTLARAGLYSTSN-VWYSNYPDWMVRL
          +   YHV R+ N  AH +A+    +    VW  + PDW++ L
Subjt:  FQLLKFYHVNRDFNVLAHTLARAGLYSTSN-VWYSNYPDWMVRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGTAGATGCAGCTTGTGATTTGGAAGATATGAGTTATGGCATTGGTGTAGTGCTCCAAGATCAGATGGACCAGTTGTGGCTAGCTTTGCAACAAGGATCGGGGAC
TTTTTCTAGTGTGTTATGTGCAAAGGCTATGGCAGTCCTAGAGGGTATGAAGATTGCACGTCAAAATAATGTCCAACGATTAACTATTTTTTCTGATTGTCTGGCATTGA
TTTCAATTCTTACGCGGACAGATCGGTGTGTCATGGACTCTGCTACTATCATTTGGGATATCGAACGATTGCGCAAATCGTTCCAACTGCTTAAATTTTATCATGTAAAT
CGTGATTTCAATGTATTAGCTCATACTTTAGCTCGTGCAGGGTTGTATTCCACATCCAATGTGTGGTACTCAAACTATCCGGATTGGATGGTCAGGCTTGCTCATTGTGA
GCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATGTAGATGCAGCTTGTGATTTGGAAGATATGAGTTATGGCATTGGTGTAGTGCTCCAAGATCAGATGGACCAGTTGTGGCTAGCTTTGCAACAAGGATCGGGGAC
TTTTTCTAGTGTGTTATGTGCAAAGGCTATGGCAGTCCTAGAGGGTATGAAGATTGCACGTCAAAATAATGTCCAACGATTAACTATTTTTTCTGATTGTCTGGCATTGA
TTTCAATTCTTACGCGGACAGATCGGTGTGTCATGGACTCTGCTACTATCATTTGGGATATCGAACGATTGCGCAAATCGTTCCAACTGCTTAAATTTTATCATGTAAAT
CGTGATTTCAATGTATTAGCTCATACTTTAGCTCGTGCAGGGTTGTATTCCACATCCAATGTGTGGTACTCAAACTATCCGGATTGGATGGTCAGGCTTGCTCATTGTGA
GCAGTAG
Protein sequenceShow/hide protein sequence
MHVDAACDLEDMSYGIGVVLQDQMDQLWLALQQGSGTFSSVLCAKAMAVLEGMKIARQNNVQRLTIFSDCLALISILTRTDRCVMDSATIIWDIERLRKSFQLLKFYHVN
RDFNVLAHTLARAGLYSTSNVWYSNYPDWMVRLAHCEQ