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Lag0025644 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025644
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr10:16882700..16883026
RNA-Seq ExpressionLag0025644
SyntenyLag0025644
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032774.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]5.2e-1349.38Show/hide
Query:  FQPTLEGSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDK
        F+    G+ CARFLA+ Q+ ++ EYL+KFKELSAPLP ++  ++E T  NGLDP ++ EV    ++ L +MM+AAQ VE+K
Subjt:  FQPTLEGSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDK

KAA0037917.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-1350.67Show/hide
Query:  GSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDK
        G+ CARFLA+ Q+ T+ EYL+KF+ELSAPLP ++ +++E T  NGLDP ++ EV    ++GL ++M+AAQ  E+K
Subjt:  GSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDK

RVW41094.1 hypothetical protein CK203_069772 [Vitis vinifera]1.8e-1351.19Show/hide
Query:  FQPTLEGSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDKNMA
        F+PT EGSLC +FLA+ Q  TMV Y  +F+ L+ PL  +S ++MEST MNGL PE++AE+   +  GL  +M+ AQ VED+N+A
Subjt:  FQPTLEGSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDKNMA

TYK05726.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.8e-1350.67Show/hide
Query:  GSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDK
        G+ CARFLA+ Q  T+ EYL+KF+ELSAPLP ++ +++E T  NGLDP ++ EV    ++GL ++M+AAQ  E+K
Subjt:  GSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDK

TYK18994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-1350.67Show/hide
Query:  GSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDK
        G+ CARFLA+ Q+ T+ EYL+KF+ELSAPLP ++ +++E T  NGLDP ++ EV    ++GL ++M+AAQ  E+K
Subjt:  GSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDK

TrEMBL top hitse value%identityAlignment
A0A438E000 Retrotrans_gag domain-containing protein8.7e-1451.19Show/hide
Query:  FQPTLEGSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDKNMA
        F+PT EGSLC +FLA+ Q  TMV Y  +F+ L+ PL  +S ++MEST MNGL PE++AE+   +  GL  +M+ AQ VED+N+A
Subjt:  FQPTLEGSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDKNMA

A0A5A7SNK3 Putative retroelement pol polyprotein2.5e-1349.38Show/hide
Query:  FQPTLEGSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDK
        F+    G+ CARFLA+ Q+ ++ EYL+KFKELSAPLP ++  ++E T  NGLDP ++ EV    ++ L +MM+AAQ VE+K
Subjt:  FQPTLEGSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDK

A0A5A7T7U7 Ty3-gypsy retrotransposon protein3.3e-1349.33Show/hide
Query:  GSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDK
        G+ CARFLA+ Q+ T+ EYL+KF+ELSAPLP ++ +++E +  NGLDP ++ EV    ++GL ++M+AAQ  E+K
Subjt:  GSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDK

A0A5A7T8L1 Ty3-gypsy retrotransposon protein8.7e-1450.67Show/hide
Query:  GSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDK
        G+ CARFLA+ Q+ T+ EYL+KF+ELSAPLP ++ +++E T  NGLDP ++ EV    ++GL ++M+AAQ  E+K
Subjt:  GSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDK

A0A5D3D605 Ty3-gypsy retrotransposon protein8.7e-1450.67Show/hide
Query:  GSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDK
        G+ CARFLA+ Q+ T+ EYL+KF+ELSAPLP ++ +++E T  NGLDP ++ EV    ++GL ++M+AAQ  E+K
Subjt:  GSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTAGTGGGAAGAAGGAAGGGAACCATGTCAAGGATGGTCAAACCTCAAAGACAAGATTCTAGATGTTTTCAACCTACTCTAGAGGGGTCTCTGTGCGCTAGGTT
TTTGGCACTACTACAAGACGACACGATGGTTGAATACTTAGAGAAATTCAAGGAATTATCAGCCCCCTTACCGCATCTTTCAAATAAACTTATGGAAAGTACTTGTATGA
ATGGGTTGGATCCAGAAGTCAAGGCAGAAGTTTTATGTTTTGAATCGATGGGGTTGGTTGAGATGATGAAAGCGGCCCAATGTGTGGAAGACAAAAATATGGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTAGTGGGAAGAAGGAAGGGAACCATGTCAAGGATGGTCAAACCTCAAAGACAAGATTCTAGATGTTTTCAACCTACTCTAGAGGGGTCTCTGTGCGCTAGGTT
TTTGGCACTACTACAAGACGACACGATGGTTGAATACTTAGAGAAATTCAAGGAATTATCAGCCCCCTTACCGCATCTTTCAAATAAACTTATGGAAAGTACTTGTATGA
ATGGGTTGGATCCAGAAGTCAAGGCAGAAGTTTTATGTTTTGAATCGATGGGGTTGGTTGAGATGATGAAAGCGGCCCAATGTGTGGAAGACAAAAATATGGCCTGA
Protein sequenceShow/hide protein sequence
MAVVGRRKGTMSRMVKPQRQDSRCFQPTLEGSLCARFLALLQDDTMVEYLEKFKELSAPLPHLSNKLMESTCMNGLDPEVKAEVLCFESMGLVEMMKAAQCVEDKNMA