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Lag0025645 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025645
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionMediator of RNA polymerase II transcription subunit 11
Genome locationchr10:16888176..16891861
RNA-Seq ExpressionLag0025645
SyntenyLag0025645
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016592 - mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR019404 - Mediator complex, subunit Med11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7019333.1 Mediator of RNA polymerase II transcription subunit 11, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-22100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
XP_022142440.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia]1.6e-22100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
XP_022927640.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata]1.6e-22100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
XP_022973172.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita maxima]1.6e-22100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
XP_023520392.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo]1.6e-22100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
TrEMBL top hitse value%identityAlignment
A0A1S3B5G7 Mediator of RNA polymerase II transcription subunit 111.9e-2196.49Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
A0A5D3C2G2 Mediator of RNA polymerase II transcription subunit 111.9e-2196.49Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
A0A6J1CKY4 Mediator of RNA polymerase II transcription subunit 117.7e-23100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
A0A6J1EPJ1 Mediator of RNA polymerase II transcription subunit 117.7e-23100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
A0A6J1I6T5 Mediator of RNA polymerase II transcription subunit 117.7e-23100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
SwissProt top hitse value%identityAlignment
Q6ID77 Mediator of RNA polymerase II transcription subunit 115.9e-2080.7Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +K
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Arabidopsis top hitse value%identityAlignment
AT3G01435.1 Expressed protein4.2e-2180.7Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +K
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTGGTTCATCCTTACGATGAAGGATCAGGATATGGAGTGGCAGTCCTTGGATTTGACGGAATTGTTGCCGCCGCTTCTCTCCCGTTCACTGCTGTCGCCGCCGTC
ATCTTTCTTCGACTCGGGCCGCTCCCACCGTCGTAGTTCTTCCGTTCGTGCCGCCGCAGCCTCCGTCCTAGCGATTTTGCACTTAATTTCTACTCCGTTGAGAGAGAAAA
GGAATTGGGTTGAAAAAAAGAACCAAACCAGATCGAAGGAAGCTGATGAGTCATTTTTGAGAACTGAAGATGTCTCTAGACATTCTCCCATGAACCGTAGAAACCCAGGA
CAGCTCTTGATGGATCCACTGACCCAGAATACTTCATTGCAACGTCTTCAAAATGTGGAAAAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGTGGAGTCATGGAAGAGCT
TGCCAATCCTGCTGGTCCAAGAAAGGAATTTGTCAACAACCATTGCAGTGAGTTCATGCAATTCATCAAGCAAAAGCTTAGCTCAATTGGCATAAAGTTGTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGTGGTTCATCCTTACGATGAAGGATCAGGATATGGAGTGGCAGTCCTTGGATTTGACGGAATTGTTGCCGCCGCTTCTCTCCCGTTCACTGCTGTCGCCGCCGTC
ATCTTTCTTCGACTCGGGCCGCTCCCACCGTCGTAGTTCTTCCGTTCGTGCCGCCGCAGCCTCCGTCCTAGCGATTTTGCACTTAATTTCTACTCCGTTGAGAGAGAAAA
GGAATTGGGTTGAAAAAAAGAACCAAACCAGATCGAAGGAAGCTGATGAGTCATTTTTGAGAACTGAAGATGTCTCTAGACATTCTCCCATGAACCGTAGAAACCCAGGA
CAGCTCTTGATGGATCCACTGACCCAGAATACTTCATTGCAACGTCTTCAAAATGTGGAAAAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGTGGAGTCATGGAAGAGCT
TGCCAATCCTGCTGGTCCAAGAAAGGAATTTGTCAACAACCATTGCAGTGAGTTCATGCAATTCATCAAGCAAAAGCTTAGCTCAATTGGCATAAAGTTGTACTAA
Protein sequenceShow/hide protein sequence
MQWFILTMKDQDMEWQSLDLTELLPPLLSRSLLSPPSSFFDSGRSHRRSSSVRAAAASVLAILHLISTPLREKRNWVEKKNQTRSKEADESFLRTEDVSRHSPMNRRNPG
QLLMDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKQKLSSIGIKLY