; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0025653 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025653
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr10:17108261..17109288
RNA-Seq ExpressionLag0025653
SyntenyLag0025653
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036942.1 uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa]1.0e-6046.65Show/hide
Query:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD
        MT+MFM+TLR+PFY+ MI NA+T+F DIIVIGERIEYGIKHGR+ +AT E    KKGT S+KKEGE  AI F  S K+KS FG+R+YEQ    Y++N+S 
Subjt:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD

Query:  APYNNYVATHTFSGATKSTNTHFP---------QQNSHSPK------------PSMIQTLNREL-----------------------------------C
         PYN+YV  HT S   K  N++ P         + NS + +            P +IQ  NR+L                                   C
Subjt:  APYNNYVATHTFSGATKSTNTHFP---------QQNSHSPK------------PSMIQTLNREL-----------------------------------C

Query:  RFEKESTN--LNQCWMVKLKDGENSDINNNPLPNHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGI
           K +    +N  W+   K GE S++  NPLP+HENPKVNVVD L E C+ +V+EI  PME LFE L +A YV+ EYLDP +RYEGYDE +HCIFH G+
Subjt:  RFEKESTN--LNQCWMVKLKDGENSDINNNPLPNHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGI

Query:  ARHTIQYCGKFRS
        A H +Q C KFRS
Subjt:  ARHTIQYCGKFRS

KAA0036950.1 uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa]1.2e-6147.28Show/hide
Query:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD
        MT+MFM+TLR+PFY+ MI NA+T+F DIIVIGERIEYGIKHGR+ +AT E    KKGT S+KKEGE  AI F  S K+KS FG+R+YEQ    Y++N+S 
Subjt:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD

Query:  APYNNYVATHTFSGATKSTNTHFP---------QQNSHSPK------------PSMIQTLNREL-----------------------------------C
         PYN+YV  HT S   K  N++ P         + NS + +            P +IQ  NR+L                                   C
Subjt:  APYNNYVATHTFSGATKSTNTHFP---------QQNSHSPK------------PSMIQTLNREL-----------------------------------C

Query:  RFEKESTN--LNQCWMVKLKDGENSDINNNPLPNHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGI
           K +    +N  W+   K GE S++N NPLP+HENPKVNVVD L E CK +V+EI  PME LFE L +A YV  EYLDP +RYEGYDE +HCIFH G+
Subjt:  RFEKESTN--LNQCWMVKLKDGENSDINNNPLPNHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGI

Query:  ARHTIQYCGKFRS
        A H +Q C KFRS
Subjt:  ARHTIQYCGKFRS

KAA0036957.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]8.7e-6046.01Show/hide
Query:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD
        MT+MFM+TLR+PFY+ MI NA+T+F DIIVIGERIEYGIKHGR+ +AT E    KKGT S+KKEGE  AI F  S K+KS FG+R+YEQ    Y++N+S 
Subjt:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD

Query:  APYNNYVATHTFSGATKSTNTHFP---------QQNSHSPK------------PSMIQTLNREL-----------------------------------C
         PYN+YV  HT S   K  N++ P         + NS + +            P +IQ  NR+L                                   C
Subjt:  APYNNYVATHTFSGATKSTNTHFP---------QQNSHSPK------------PSMIQTLNREL-----------------------------------C

Query:  RFEKESTN--LNQCWMVKLKDGENSDINNNPLPNHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGI
           K +    +N  W+   K GE S++  NPLP+HENPKVN VD   E CK +++EI  PME LFE L +A YV+ EYLDP +RYEGYDE +HCIFH G+
Subjt:  RFEKESTN--LNQCWMVKLKDGENSDINNNPLPNHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGI

Query:  ARHTIQYCGKFRS
        A H +Q C KFRS
Subjt:  ARHTIQYCGKFRS

KAA0060421.1 uncharacterized protein E6C27_scaffold22G002400 [Cucumis melo var. makuwa]7.8e-6146.65Show/hide
Query:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD
        MT+MFM+TLR+PFY+ MI NA+T+F DIIVIGERIEYGIKHGR+ + T E    KKGT S+KKEGE  AI F  S K+KS FG+R+YEQ    Y++N+S 
Subjt:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD

Query:  APYNNYVATHTFSGATKSTNTHFP----QQNSHSPK-----------------PSMIQTLNREL-----------------------------------C
         PYN+YV  HT S   K  N++ P    Q     P                  P +IQ  NR+L                                   C
Subjt:  APYNNYVATHTFSGATKSTNTHFP----QQNSHSPK-----------------PSMIQTLNREL-----------------------------------C

Query:  RFEKESTN--LNQCWMVKLKDGENSDINNNPLPNHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGI
           K +    +N  W+   K GE  ++N NPLPNHENPKVN VD L E CK +V+EI  PME LFE L +A YV+ EYLDP +RYEGYDE +HCIFH G+
Subjt:  RFEKESTN--LNQCWMVKLKDGENSDINNNPLPNHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGI

Query:  ARHTIQYCGKFRS
        A H +Q C KFRS
Subjt:  ARHTIQYCGKFRS

KAA0066096.1 uncharacterized protein E6C27_scaffold21G00870 [Cucumis melo var. makuwa]8.7e-6045.37Show/hide
Query:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD
        MT+MFM+TLR+PFY+ MI NA+T+F DIIV+GERIEYGIKHGR+ + T E    KKGT S+KKEGE  AI F  S K+KS F +R+YEQ    +++N+S 
Subjt:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD

Query:  APYNNYVATHTFSGATKSTNTHFP---------QQNSHSPK------------PSMIQTLNRELCRF---------------------------------
         PYN+YV  HT S   K  N++ P         + NS + +            P +IQ  NR+L                                    
Subjt:  APYNNYVATHTFSGATKSTNTHFP---------QQNSHSPK------------PSMIQTLNRELCRF---------------------------------

Query:  ----EKESTNLNQCWMVKLKDGENSDINNNPLPNHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGI
             K  + +N  W+   K GE  ++N NPLP+HENPKVNVVD L E CK +V+EI  PME LFE L +A YV+ EYLDP +RYEGYDE +HCIFH G+
Subjt:  ----EKESTNLNQCWMVKLKDGENSDINNNPLPNHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGI

Query:  ARHTIQYCGKFRS
        A H +Q C KFRS
Subjt:  ARHTIQYCGKFRS

TrEMBL top hitse value%identityAlignment
A0A5A7T0H8 Uncharacterized protein5.0e-6146.65Show/hide
Query:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD
        MT+MFM+TLR+PFY+ MI NA+T+F DIIVIGERIEYGIKHGR+ +AT E    KKGT S+KKEGE  AI F  S K+KS FG+R+YEQ    Y++N+S 
Subjt:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD

Query:  APYNNYVATHTFSGATKSTNTHFP---------QQNSHSPK------------PSMIQTLNREL-----------------------------------C
         PYN+YV  HT S   K  N++ P         + NS + +            P +IQ  NR+L                                   C
Subjt:  APYNNYVATHTFSGATKSTNTHFP---------QQNSHSPK------------PSMIQTLNREL-----------------------------------C

Query:  RFEKESTN--LNQCWMVKLKDGENSDINNNPLPNHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGI
           K +    +N  W+   K GE S++  NPLP+HENPKVNVVD L E C+ +V+EI  PME LFE L +A YV+ EYLDP +RYEGYDE +HCIFH G+
Subjt:  RFEKESTN--LNQCWMVKLKDGENSDINNNPLPNHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGI

Query:  ARHTIQYCGKFRS
        A H +Q C KFRS
Subjt:  ARHTIQYCGKFRS

A0A5A7T0R1 Uncharacterized protein5.9e-6247.28Show/hide
Query:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD
        MT+MFM+TLR+PFY+ MI NA+T+F DIIVIGERIEYGIKHGR+ +AT E    KKGT S+KKEGE  AI F  S K+KS FG+R+YEQ    Y++N+S 
Subjt:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD

Query:  APYNNYVATHTFSGATKSTNTHFP---------QQNSHSPK------------PSMIQTLNREL-----------------------------------C
         PYN+YV  HT S   K  N++ P         + NS + +            P +IQ  NR+L                                   C
Subjt:  APYNNYVATHTFSGATKSTNTHFP---------QQNSHSPK------------PSMIQTLNREL-----------------------------------C

Query:  RFEKESTN--LNQCWMVKLKDGENSDINNNPLPNHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGI
           K +    +N  W+   K GE S++N NPLP+HENPKVNVVD L E CK +V+EI  PME LFE L +A YV  EYLDP +RYEGYDE +HCIFH G+
Subjt:  RFEKESTN--LNQCWMVKLKDGENSDINNNPLPNHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGI

Query:  ARHTIQYCGKFRS
        A H +Q C KFRS
Subjt:  ARHTIQYCGKFRS

A0A5A7T5W6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein4.2e-6046.01Show/hide
Query:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD
        MT+MFM+TLR+PFY+ MI NA+T+F DIIVIGERIEYGIKHGR+ +AT E    KKGT S+KKEGE  AI F  S K+KS FG+R+YEQ    Y++N+S 
Subjt:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD

Query:  APYNNYVATHTFSGATKSTNTHFP---------QQNSHSPK------------PSMIQTLNREL-----------------------------------C
         PYN+YV  HT S   K  N++ P         + NS + +            P +IQ  NR+L                                   C
Subjt:  APYNNYVATHTFSGATKSTNTHFP---------QQNSHSPK------------PSMIQTLNREL-----------------------------------C

Query:  RFEKESTN--LNQCWMVKLKDGENSDINNNPLPNHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGI
           K +    +N  W+   K GE S++  NPLP+HENPKVN VD   E CK +++EI  PME LFE L +A YV+ EYLDP +RYEGYDE +HCIFH G+
Subjt:  RFEKESTN--LNQCWMVKLKDGENSDINNNPLPNHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGI

Query:  ARHTIQYCGKFRS
        A H +Q C KFRS
Subjt:  ARHTIQYCGKFRS

A0A5A7V3W7 Retrotrans_gag domain-containing protein3.8e-6146.65Show/hide
Query:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD
        MT+MFM+TLR+PFY+ MI NA+T+F DIIVIGERIEYGIKHGR+ + T E    KKGT S+KKEGE  AI F  S K+KS FG+R+YEQ    Y++N+S 
Subjt:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD

Query:  APYNNYVATHTFSGATKSTNTHFP----QQNSHSPK-----------------PSMIQTLNREL-----------------------------------C
         PYN+YV  HT S   K  N++ P    Q     P                  P +IQ  NR+L                                   C
Subjt:  APYNNYVATHTFSGATKSTNTHFP----QQNSHSPK-----------------PSMIQTLNREL-----------------------------------C

Query:  RFEKESTN--LNQCWMVKLKDGENSDINNNPLPNHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGI
           K +    +N  W+   K GE  ++N NPLPNHENPKVN VD L E CK +V+EI  PME LFE L +A YV+ EYLDP +RYEGYDE +HCIFH G+
Subjt:  RFEKESTN--LNQCWMVKLKDGENSDINNNPLPNHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGI

Query:  ARHTIQYCGKFRS
        A H +Q C KFRS
Subjt:  ARHTIQYCGKFRS

A0A5A7VK41 Reverse transcriptase domain-containing protein4.2e-6049.29Show/hide
Query:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD
        MT+MFM+TLR+P Y+ MI NA+T F DIIVIGERIEYGIKHGR+ +AT+E    KKGT S+KKEGE  AI F  S K+KS FG+R+YEQ    Y++N S 
Subjt:  MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQ---KYMNNISD

Query:  APYNNYVATHTFSGATKSTNTHFPQQ--NSHSPKPSM-IQ----------------------TLNRELCRFEKESTNLNQCWMVKLKDGENSDINNNPLP
         PYN+YV  +  S   K  N++ P+      +P P + IQ                      +    L    K  + +N  W+   K GE  ++N NPLP
Subjt:  APYNNYVATHTFSGATKSTNTHFPQQ--NSHSPKPSM-IQ----------------------TLNRELCRFEKESTNLNQCWMVKLKDGENSDINNNPLP

Query:  NHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGIARHTIQYCGKFRS
        NHENPKV VVD L E CK +V+EI  PME LFE L +A YV+ EYLDP +RYEGYDE +HCIFH G+A + +Q C K RS
Subjt:  NHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDPTVRYEGYDEEKHCIFHLGIARHTIQYCGKFRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGACTATGTTTATGCACACTTTACGATCTCCCTTCTATGATTGCATGATTAGTAATGCAACAACCAGCTTCTTTGATATCATCGTTATTGGTGAAAGAATTGAGTA
TGGAATTAAGCATGGAAGGATAACAGACGCTACAGTTGAATCGACTGTGGGAAAGAAAGGAACAACATCAAGGAAGAAGGAAGGGGAGGCTCAAGCAATTAGCTTTACAA
AATCTTGGAAAAATAAATCAAAGTTTGGTAAAAGAGAATACGAGCAAAAGTACATGAACAATATCTCTGATGCTCCCTACAATAATTACGTGGCAACCCATACATTTTCT
GGAGCCACGAAATCAACAAATACACATTTTCCACAGCAAAATTCGCATTCACCTAAACCATCTATGATTCAGACACTCAACAGAGAATTGTGTCGTTTTGAAAAAGAAAG
TACAAACCTTAATCAATGTTGGATGGTTAAACTGAAAGATGGGGAAAATTCGGATATCAACAACAACCCATTACCTAATCATGAGAACCCAAAAGTAAATGTTGTAGATT
ATCTCTCTGAAGTGTGTAAAGAGAAAGTTTATGAGATTACAACGCCTATGGAGGTACTTTTCGAGACTCTGTCCGATGCGAGATATGTTAATCAAGAGTACTTGGACCCT
ACAGTAAGATATGAAGGGTATGATGAAGAAAAGCATTGCATATTCCATCTAGGAATTGCTAGACATACTATTCAATATTGTGGCAAGTTCAGATCTGATAACTCTCCAAA
AGGGAGTTATTTAGGCCTTATTTCTATAGTGATTTGTGTGCGATTTGTGACAAATAGGTGTTCTTTTAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGACGACTATGTTTATGCACACTTTACGATCTCCCTTCTATGATTGCATGATTAGTAATGCAACAACCAGCTTCTTTGATATCATCGTTATTGGTGAAAGAATTGAGTA
TGGAATTAAGCATGGAAGGATAACAGACGCTACAGTTGAATCGACTGTGGGAAAGAAAGGAACAACATCAAGGAAGAAGGAAGGGGAGGCTCAAGCAATTAGCTTTACAA
AATCTTGGAAAAATAAATCAAAGTTTGGTAAAAGAGAATACGAGCAAAAGTACATGAACAATATCTCTGATGCTCCCTACAATAATTACGTGGCAACCCATACATTTTCT
GGAGCCACGAAATCAACAAATACACATTTTCCACAGCAAAATTCGCATTCACCTAAACCATCTATGATTCAGACACTCAACAGAGAATTGTGTCGTTTTGAAAAAGAAAG
TACAAACCTTAATCAATGTTGGATGGTTAAACTGAAAGATGGGGAAAATTCGGATATCAACAACAACCCATTACCTAATCATGAGAACCCAAAAGTAAATGTTGTAGATT
ATCTCTCTGAAGTGTGTAAAGAGAAAGTTTATGAGATTACAACGCCTATGGAGGTACTTTTCGAGACTCTGTCCGATGCGAGATATGTTAATCAAGAGTACTTGGACCCT
ACAGTAAGATATGAAGGGTATGATGAAGAAAAGCATTGCATATTCCATCTAGGAATTGCTAGACATACTATTCAATATTGTGGCAAGTTCAGATCTGATAACTCTCCAAA
AGGGAGTTATTTAGGCCTTATTTCTATAGTGATTTGTGTGCGATTTGTGACAAATAGGTGTTCTTTTAGATGA
Protein sequenceShow/hide protein sequence
MTTMFMHTLRSPFYDCMISNATTSFFDIIVIGERIEYGIKHGRITDATVESTVGKKGTTSRKKEGEAQAISFTKSWKNKSKFGKREYEQKYMNNISDAPYNNYVATHTFS
GATKSTNTHFPQQNSHSPKPSMIQTLNRELCRFEKESTNLNQCWMVKLKDGENSDINNNPLPNHENPKVNVVDYLSEVCKEKVYEITTPMEVLFETLSDARYVNQEYLDP
TVRYEGYDEEKHCIFHLGIARHTIQYCGKFRSDNSPKGSYLGLISIVICVRFVTNRCSFR