; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0025686 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025686
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:17922522..17925421
RNA-Seq ExpressionLag0025686
SyntenyLag0025686
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031091054.1 uncharacterized protein LOC115996048 [Ipomoea triloba]6.3e-1032.92Show/hide
Query:  KFQEKTKVGMQQLGAQVSQWVTL-----SQIGDKI--------------------DKLHVHPEIPRREERTKKSEEKTSNLNFPKKRGVHFDPAIDFNSY
        +FQ++T+ G+QQLG Q+SQ  T      +Q   K+                     +L +   +P  EE+ +KS+E+  ++     +         +NS 
Subjt:  KFQEKTKVGMQQLGAQVSQWVTL-----SQIGDKI--------------------DKLHVHPEIPRREERTKKSEEKTSNLNFPKKRGVHFDPAIDFNSY

Query:  VPKALFPSRLVLQPTPPKEKKEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKKGK
        +P   FPSRL       +E+ E  +L+ F+K+E+NIPLL+A+KQIPK  KFLK+ C+ K K
Subjt:  VPKALFPSRLVLQPTPPKEKKEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKKGK

XP_031248068.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116105799 [Pistacia vera]6.7e-1239.31Show/hide
Query:  LKFQEKTKVGMQQLGAQVSQW-VTLSQI-GDKIDKLHVHPEIPRREE------RTKKSEEKTSNLNFPKKRGVHFDPAIDFNSYVPKALFPSRLVLQPTP
        LKFQ++TK+ ++ L +QVSQ   TL ++      KL   P +  RE       R++ S   +SN   P K        +  N+Y P   FPSR     T 
Subjt:  LKFQEKTKVGMQQLGAQVSQW-VTLSQI-GDKIDKLHVHPEIPRREE------RTKKSEEKTSNLNFPKKRGVHFDPAIDFNSYVPKALFPSRLVLQPTP

Query:  PKEKKEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKKGK
         KE+ E+++LD F+K+ VNIPLLDA+KQ+P+  KFLK+ C+ K K
Subjt:  PKEKKEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKKGK

XP_031259946.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116118117 [Pistacia vera]5.7e-1137.33Show/hide
Query:  SSSGQLKFQEKTKVGMQQLGAQVSQW-VTLSQI-GDKIDKLHVHPEIPRREE------RTKKSEEKTSNLNFPKKRGVHFDPAIDFNSYVPKALFPSRLV
        S+   LKFQ++TK+ ++ L +QVSQ   TL ++      KL   P +  RE       R++ S   +SN   P K        +  N+Y P   FPSR  
Subjt:  SSSGQLKFQEKTKVGMQQLGAQVSQW-VTLSQI-GDKIDKLHVHPEIPRREE------RTKKSEEKTSNLNFPKKRGVHFDPAIDFNSYVPKALFPSRLV

Query:  LQPTPPKEKKEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKKGK
           T  KE+ E+++LD F+K+ VNIPLLD +KQ+P+  KF K+ C+ K K
Subjt:  LQPTPPKEKKEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKKGK

XP_031275687.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116134142 [Pistacia vera]8.8e-1237.91Show/hide
Query:  SSSGQLKFQEKTKVGMQQLGAQVSQWVTLSQIGDKID-----KLHVHPEIPRREE------RTKKSEEKTSNLNFPKKRGVHFDPAIDFNSYVPKALFPS
        S+   LKFQ++TK+ ++ L +QVSQ   L+ I  ++D     KL   P +  RE       R++     +SN   P K        +  N+Y P   FPS
Subjt:  SSSGQLKFQEKTKVGMQQLGAQVSQWVTLSQIGDKID-----KLHVHPEIPRREE------RTKKSEEKTSNLNFPKKRGVHFDPAIDFNSYVPKALFPS

Query:  RLVLQPTPPKEKKEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKKGK
        R     T  KE+ E+++LD F+K+ VNIPLLDA+KQ+P+  KFLK+ C+ K K
Subjt:  RLVLQPTPPKEKKEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKKGK

XP_038877406.1 uncharacterized protein LOC120069694 [Benincasa hispida]2.8e-1035.22Show/hide
Query:  FQEKTKVGMQQLGAQVSQWVT-LSQIGDKIDKLHVHPEIPRREERT-------KKSEEKTSNLNFPK------------------KRGVHFDPAIDFNSY
        FQ+ TK  ++ LG QVSQ  T +S++  +  KL   P+    E  +       K+ E    ++  PK                  K+GV   P    ++Y
Subjt:  FQEKTKVGMQQLGAQVSQWVT-LSQIGDKIDKLHVHPEIPRREERT-------KKSEEKTSNLNFPK------------------KRGVHFDPAIDFNSY

Query:  VPKALFPSRLVLQPTPPKEKKEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKK
        VPKA FPS+L  +   P   K  ++L+ F+++E+NIPLLDA+KQIPK  KFLK+ C++K
Subjt:  VPKALFPSRLVLQPTPPKEKKEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKK

TrEMBL top hitse value%identityAlignment
A0A5A7TV43 Retrotransposon gag protein8.8e-1033.56Show/hide
Query:  SSGQLKFQEKTKVGMQQLGAQVSQWVTLSQIGDKIDKLHVHPEIPRREERTKKSEEKTSNLNFPKKRGVHFDPAIDFNSYVPKALFPSRLVLQPTPPKEK
        ++  L FQ++ K  M QL   +S+        D  +KL   P     E + +K E   S  N          P  DF  Y+PK  FPSRL   P   +  
Subjt:  SSGQLKFQEKTKVGMQQLGAQVSQWVTLSQIGDKIDKLHVHPEIPRREERTKKSEEKTSNLNFPKKRGVHFDPAIDFNSYVPKALFPSRLVLQPTPPKEK

Query:  KEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKKGKPERIP
        KE+++L+ F+K+++N+PLLDA++Q+ +  KFLK+ C+ K K +  P
Subjt:  KEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKKGKPERIP

A0A5A7UGJ2 Retrotransposon gag protein1.2e-0938.14Show/hide
Query:  RTKKSEEKTSNLNFPKKRGVHFDPAIDFNSYVPKALFPSRLVLQPTPPKEKKEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKKGKPERIP
        + +  EEK      P        P  DF  Y+PK  FPSRL   P   +  KE+++L+ F+K+++N+PLLDA++Q+P+  KFLK+ C+ K K +  P
Subjt:  RTKKSEEKTSNLNFPKKRGVHFDPAIDFNSYVPKALFPSRLVLQPTPPKEKKEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKKGKPERIP

A0A5D3CC51 Uncharacterized protein6.8e-1040.21Show/hide
Query:  RTKKSEEKTSNLNFPKKRGVHFDPAIDFNSYVPKALFPSRLVLQPTPPKEKKEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKKGKPERIP
        + +  EEK      P        P  DF  Y+PK  FPSRL   P   +  KE+++L+ FKK+++N+PLLDA++QIP+  KFLK+ C+ K K +  P
Subjt:  RTKKSEEKTSNLNFPKKRGVHFDPAIDFNSYVPKALFPSRLVLQPTPPKEKKEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKKGKPERIP

A0A5D3CJL9 Transposon Ty3-I Gag-Pol polyprotein2.0e-0938.14Show/hide
Query:  RTKKSEEKTSNLNFPKKRGVHFDPAIDFNSYVPKALFPSRLVLQPTPPKEKKEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKKGKPERIP
        + +  EEK      P        P  DF  Y+PK  FPSR  L P   +  KE+++L+ F+K+++N+PLLDA++Q+P+  KFLK+ C+ K K +  P
Subjt:  RTKKSEEKTSNLNFPKKRGVHFDPAIDFNSYVPKALFPSRLVLQPTPPKEKKEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKKGKPERIP

A0A5D3D4R3 Retrotransposon gag protein8.8e-1033.33Show/hide
Query:  SSGQLKFQEKTKVGMQQLGAQVSQWVTLSQIGDKIDKLHVHPEIPRREERTKKSEEKTSNLNFPKKRGVHFDPAIDFNSYVPKALFPSRLVLQPTPPKEK
        ++  L FQ++ K  M QL   +S+        D   KL   P+    E + +K E      N    +     P  DF  Y+PK  FPSRL   P   +  
Subjt:  SSGQLKFQEKTKVGMQQLGAQVSQWVTLSQIGDKIDKLHVHPEIPRREERTKKSEEKTSNLNFPKKRGVHFDPAIDFNSYVPKALFPSRLVLQPTPPKEK

Query:  KEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKKGK
        KE+++ + F+K+++N+PLLDA++Q+P+  KFLK+ C+ K K
Subjt:  KEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKKGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTGGCAGCGTCTCGACGCTGGCTGGTTCCAAACCCTAGGCCCAGACGACACGACGTCGAGACGCCATGTCCAACGTCTCGACCCCACGATTAAATCCTACAAAAG
CCCTTCTTTTGTTCTGTCGCAGGAATCCTCGTCTGAATGGAATACATATGAAGGATTTCCAGCGATGCAGATCCAACAGACACCAAACTATTACTTCCAGAACGATCGAA
GCCTAAATATGCAGCATGGATCAAGTTCAGGTCAACTCAAATTCCAAGAGAAGACCAAAGTTGGGATGCAACAATTGGGAGCCCAAGTTTCTCAGTGGGTGACACTGTCA
CAAATTGGAGACAAAATTGACAAACTGCATGTTCATCCCGAGATCCCAAGAAGAGAAGAAAGAACCAAAAAGTCTGAAGAGAAGACGAGCAATCTCAACTTTCCAAAGAA
GCGAGGGGTACATTTCGATCCTGCTATTGACTTTAATTCTTATGTTCCCAAAGCTCTTTTCCCTAGCAGGTTAGTGTTGCAGCCTACGCCTCCCAAGGAAAAAAAAGAGA
AGGACATGCTTGACCCATTCAAGAAGATGGAGGTCAACATCCCGCTTCTAGACGCCGTAAAACAAATTCCTAAGGCAGGAAAATTTCTTAAGAAATGGTGCTCCAAGAAA
GGTAAGCCAGAGCGGATTCCTCCCGGAACTCCGGATCTTTTGGGATATGTTTCAAACCCAATGAAGAGCGACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGT
CACTGGCGTTCACCAATACACAATGATCGTAGTGTGGAGAATTGCCACACACTCTCTAAATCATCCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTGGCAGCGTCTCGACGCTGGCTGGTTCCAAACCCTAGGCCCAGACGACACGACGTCGAGACGCCATGTCCAACGTCTCGACCCCACGATTAAATCCTACAAAAG
CCCTTCTTTTGTTCTGTCGCAGGAATCCTCGTCTGAATGGAATACATATGAAGGATTTCCAGCGATGCAGATCCAACAGACACCAAACTATTACTTCCAGAACGATCGAA
GCCTAAATATGCAGCATGGATCAAGTTCAGGTCAACTCAAATTCCAAGAGAAGACCAAAGTTGGGATGCAACAATTGGGAGCCCAAGTTTCTCAGTGGGTGACACTGTCA
CAAATTGGAGACAAAATTGACAAACTGCATGTTCATCCCGAGATCCCAAGAAGAGAAGAAAGAACCAAAAAGTCTGAAGAGAAGACGAGCAATCTCAACTTTCCAAAGAA
GCGAGGGGTACATTTCGATCCTGCTATTGACTTTAATTCTTATGTTCCCAAAGCTCTTTTCCCTAGCAGGTTAGTGTTGCAGCCTACGCCTCCCAAGGAAAAAAAAGAGA
AGGACATGCTTGACCCATTCAAGAAGATGGAGGTCAACATCCCGCTTCTAGACGCCGTAAAACAAATTCCTAAGGCAGGAAAATTTCTTAAGAAATGGTGCTCCAAGAAA
GGTAAGCCAGAGCGGATTCCTCCCGGAACTCCGGATCTTTTGGGATATGTTTCAAACCCAATGAAGAGCGACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGT
CACTGGCGTTCACCAATACACAATGATCGTAGTGTGGAGAATTGCCACACACTCTCTAAATCATCCCTGA
Protein sequenceShow/hide protein sequence
MSWQRLDAGWFQTLGPDDTTSRRHVQRLDPTIKSYKSPSFVLSQESSSEWNTYEGFPAMQIQQTPNYYFQNDRSLNMQHGSSSGQLKFQEKTKVGMQQLGAQVSQWVTLS
QIGDKIDKLHVHPEIPRREERTKKSEEKTSNLNFPKKRGVHFDPAIDFNSYVPKALFPSRLVLQPTPPKEKKEKDMLDPFKKMEVNIPLLDAVKQIPKAGKFLKKWCSKK
GKPERIPPGTPDLLGYVSNPMKSDRSSTRQLAIPSSVTGVHQYTMIVVWRIATHSLNHP