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Lag0025695 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025695
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr10:17977596..17978412
RNA-Seq ExpressionLag0025695
SyntenyLag0025695
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8483306.1 hypothetical protein CXB51_022295 [Gossypium anomalum]4.3e-0535.77Show/hide
Query:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFL--TTSPSIQQSHETIITWLNTSHEDNLLSQNNQP-----SPSLLSSNPQPNHEISSTPSENQSSVPSSL
        GYKCL+  GRV+V R V+F+E  FPF+ GF   T    I+  H+  +  +  S        + QP     SPSLL   P P   + S PS + SS P  +
Subjt:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFL--TTSPSIQQSHETIITWLNTSHEDNLLSQNNQP-----SPSLLSSNPQPNHEISSTPSENQSSVPSSL

Query:  EVSPTCEPISTPSENQSSVPSSL
           P+  P S P +  +  PSS+
Subjt:  EVSPTCEPISTPSENQSSVPSSL

KYP46257.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]3.7e-0435.45Show/hide
Query:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFLTTSPSIQQSHETIITWLN----TSHEDNLLSQN-NQPSPSLLSSNPQPNHEISSTPSENQSSVPSSLEV
        GYKCL++ GR+Y+ + V+FNE +FP+K+ F ++  S  Q   ++   +N     +H   L S N    SPSL+S +  PN    ++PS    S+P+S  +
Subjt:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFLTTSPSIQQSHETIITWLN----TSHEDNLLSQN-NQPSPSLLSSNPQPNHEISSTPSENQSSVPSSLEV

Query:  SPTCEPISTP
         P+  PI  P
Subjt:  SPTCEPISTP

KYP61341.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]3.7e-0435.45Show/hide
Query:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFLTTSPSIQQSHETIITWLN----TSHEDNLLSQN-NQPSPSLLSSNPQPNHEISSTPSENQSSVPSSLEV
        GYKCL++ GR+Y+ + V+FNE +FP+K+ F ++  S  Q   ++   +N     +H   L S N    SPSL+S +  PN    ++PS    S+P+S  +
Subjt:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFLTTSPSIQQSHETIITWLN----TSHEDNLLSQN-NQPSPSLLSSNPQPNHEISSTPSENQSSVPSSLEV

Query:  SPTCEPISTP
         P+  PI  P
Subjt:  SPTCEPISTP

MCH80671.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trifolium medium]4.8e-0429.59Show/hide
Query:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFLTT-SPSIQQSHETIITWLNTSHEDNLLSQNNQPSPSLLSSNPQPNHEISSTPSENQSSVPSSLEVSPTC
        GYKCLS SGR+Y+F+ V+FNE+ FP+ + F T+ S     S   I++ L+ S   N +  +  P+PSL S++       +S+P      +P    VSP  
Subjt:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFLTT-SPSIQQSHETIITWLNTSHEDNLLSQNNQPSPSLLSSNPQPNHEISSTPSENQSSVPSSLEVSPTC

Query:  EPISTPSENQSSVPSSLEASPTCEPISTQNDTKGRELPNNPLLNEEQVESDEACVLTETE-ENRASISH
         P  +P+EN SS P+ +  +      +        +  ++PL+N   +++      T+   E R  ++H
Subjt:  EPISTPSENQSSVPSSLEASPTCEPISTQNDTKGRELPNNPLLNEEQVESDEACVLTETE-ENRASISH

RZC08696.1 Signal recognition particle receptor subunit alpha-like [Glycine soja]4.8e-0434.09Show/hide
Query:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFLTTSPSIQQSHETIITWLNTSHEDNLLSQNNQPSPSLLSSN-PQPNHEISSTPSENQSSVPSSLEVSPTC
        GYKCLS S RVY+ + VIFN+++FP+ + F ++SPS Q +              +L      P P    SN PQP    S+ P  +  SV SS       
Subjt:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFLTTSPSIQQSHETIITWLNTSHEDNLLSQNNQPSPSLLSSN-PQPNHEISSTPSENQSSVPSSLEVSPTC

Query:  EPISTPSENQSSVPSSLEASPTCEPISTQNDTKGRELPNNPLLNEEQVESDEACVLTETEENRASISHPMQTRSKS
            T   +QS+V  S+ AS T +P +T    +     ++PL+   +  S     L  T  +R    HPMQTRSKS
Subjt:  EPISTPSENQSSVPSSLEASPTCEPISTQNDTKGRELPNNPLLNEEQVESDEACVLTETEENRASISHPMQTRSKS

TrEMBL top hitse value%identityAlignment
A0A151RUP0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-0435.45Show/hide
Query:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFLTTSPSIQQSHETIITWLN----TSHEDNLLSQN-NQPSPSLLSSNPQPNHEISSTPSENQSSVPSSLEV
        GYKCL++ GR+Y+ + V+FNE +FP+K+ F ++  S  Q   ++   +N     +H   L S N    SPSL+S +  PN    ++PS    S+P+S  +
Subjt:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFLTTSPSIQQSHETIITWLN----TSHEDNLLSQN-NQPSPSLLSSNPQPNHEISSTPSENQSSVPSSLEV

Query:  SPTCEPISTP
         P+  PI  P
Subjt:  SPTCEPISTP

A0A151T2X6 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-0435.45Show/hide
Query:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFLTTSPSIQQSHETIITWLN----TSHEDNLLSQN-NQPSPSLLSSNPQPNHEISSTPSENQSSVPSSLEV
        GYKCL++ GR+Y+ + V+FNE +FP+K+ F ++  S  Q   ++   +N     +H   L S N    SPSL+S +  PN    ++PS    S+P+S  +
Subjt:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFLTTSPSIQQSHETIITWLN----TSHEDNLLSQN-NQPSPSLLSSNPQPNHEISSTPSENQSSVPSSLEV

Query:  SPTCEPISTP
         P+  PI  P
Subjt:  SPTCEPISTP

A0A803P5A9 Uncharacterized protein3.6e-0568.42Show/hide
Query:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFLTTSPSIQ
        GYKCLS++GRVY+ R V+ NE EFPFKNGFL T  S Q
Subjt:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFLTTSPSIQ

A0A803PM38 Uncharacterized protein1.4e-0440.7Show/hide
Query:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFLTTSPSIQQSHETIITWLNTSHEDNLLSQNNQPSPSLLSSNPQPNHEISSTPSENQ
        GYKCLSS+GR+Y+ R VIFNE EFPFK+GFL T+         +  W  +S  ++  S  N  S S+   N Q +     TP+ ++
Subjt:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFLTTSPSIQQSHETIITWLNTSHEDNLLSQNNQPSPSLLSSNPQPNHEISSTPSENQ

A0A803Q615 Uncharacterized protein3.2e-0637.04Show/hide
Query:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFLTTSPSIQQSHETIITW-------LNTSHEDNLLSQNNQPSPSLLSSN-----PQPNHEISSTPSENQSS
        GYKCLSS+GR+Y+ R+VIFNE EFPF  GFL T  + Q  H ++ +W       L++S   ++ S+   P+P    S      PQ  H IS   +   S 
Subjt:  GYKCLSSSGRVYVFRSVIFNEAEFPFKNGFLTTSPSIQQSHETIITW-------LNTSHEDNLLSQNNQPSPSLLSSN-----PQPNHEISSTPSENQSS

Query:  VPSSLEVS
             E++
Subjt:  VPSSLEVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCAACTTATTGAAAGAGCTAGATTGAGAAGTTATCTTCTTGGATGGTTGTATGATTCCTGGGTTTTCGGTTACAAGTGTCTAAGCTCAAGTGGTCGAGTTTATGT
CTTTAGAAGTGTCATATTCAATGAAGCAGAGTTCCCTTTCAAAAATGGCTTCTTAACCACATCCCCTTCCATTCAACAATCCCATGAAACCATCATAACTTGGTTGAATA
CATCACATGAGGACAACCTCCTTTCTCAAAACAACCAACCTAGTCCTTCCTTACTGTCATCCAATCCACAGCCAAACCATGAGATTTCTTCCACACCATCTGAGAATCAA
AGCAGTGTCCCAAGTTCCCTTGAAGTATCACCCACTTGTGAGCCTATCTCAACACCATCTGAGAATCAAAGCAGTGTCCCAAGTTCCCTTGAAGCATCACCCACTTGTGA
GCCTATTTCAACACAAAATGATACTAAAGGGAGAGAATTACCTAACAACCCACTTTTAAATGAGGAACAAGTTGAGAGTGATGAAGCTTGTGTTCTAACCGAAACAGAGG
AAAACAGGGCTAGCATTAGTCATCCTATGCAAACACGGTCAAAGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCAACTTATTGAAAGAGCTAGATTGAGAAGTTATCTTCTTGGATGGTTGTATGATTCCTGGGTTTTCGGTTACAAGTGTCTAAGCTCAAGTGGTCGAGTTTATGT
CTTTAGAAGTGTCATATTCAATGAAGCAGAGTTCCCTTTCAAAAATGGCTTCTTAACCACATCCCCTTCCATTCAACAATCCCATGAAACCATCATAACTTGGTTGAATA
CATCACATGAGGACAACCTCCTTTCTCAAAACAACCAACCTAGTCCTTCCTTACTGTCATCCAATCCACAGCCAAACCATGAGATTTCTTCCACACCATCTGAGAATCAA
AGCAGTGTCCCAAGTTCCCTTGAAGTATCACCCACTTGTGAGCCTATCTCAACACCATCTGAGAATCAAAGCAGTGTCCCAAGTTCCCTTGAAGCATCACCCACTTGTGA
GCCTATTTCAACACAAAATGATACTAAAGGGAGAGAATTACCTAACAACCCACTTTTAAATGAGGAACAAGTTGAGAGTGATGAAGCTTGTGTTCTAACCGAAACAGAGG
AAAACAGGGCTAGCATTAGTCATCCTATGCAAACACGGTCAAAGAGTTGA
Protein sequenceShow/hide protein sequence
MPQLIERARLRSYLLGWLYDSWVFGYKCLSSSGRVYVFRSVIFNEAEFPFKNGFLTTSPSIQQSHETIITWLNTSHEDNLLSQNNQPSPSLLSSNPQPNHEISSTPSENQ
SSVPSSLEVSPTCEPISTPSENQSSVPSSLEASPTCEPISTQNDTKGRELPNNPLLNEEQVESDEACVLTETEENRASISHPMQTRSKS