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Lag0025747 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025747
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr10:19170443..19176355
RNA-Seq ExpressionLag0025747
SyntenyLag0025747
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0005743 - mitochondrial inner membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050141.1 WD repeat-containing protein 11 isoform X1 [Cucumis melo var. makuwa]2.1e-1245.24Show/hide
Query:  NKSVEGGILKGFEVGRDGISLSHLQFVDDTKFFCYGEEDSFSILNHILAFFESISRFKINRRHDPKQI-GFWTPVVDNVRKRLA
        +K V+G I++ F++GRDG+ L HLQF  DT  FC  +E+SF  LNH++  FE +   KINR  D  +   FW P+ + + KRLA
Subjt:  NKSVEGGILKGFEVGRDGISLSHLQFVDDTKFFCYGEEDSFSILNHILAFFESISRFKINRRHDPKQI-GFWTPVVDNVRKRLA

KAF4397287.1 hypothetical protein G4B88_009133 [Cannabis sativa]1.8e-1141.58Show/hide
Query:  EHYFAVNRLTESEELEATVLCLDGVALKCHHWEERRQSIGRWEEFRRLVLRQLLLTKQAS-LENLDDDTLEGKFIDGLKEDIKMEMRVNRLVGLTLLMEM
        E YF + RL+  E+LEA VLCL+G AL    WE +RQ+I  WEE + L+LR+     +AS +E + D  L+  F+ GLK +I+  +R+    GL  +M++
Subjt:  EHYFAVNRLTESEELEATVLCLDGVALKCHHWEERRQSIGRWEEFRRLVLRQLLLTKQAS-LENLDDDTLEGKFIDGLKEDIKMEMRVNRLVGLTLLMEM

Query:  A
        A
Subjt:  A

TYK06396.1 WD repeat-containing protein 11 isoform X1 [Cucumis melo var. makuwa]2.1e-1245.24Show/hide
Query:  NKSVEGGILKGFEVGRDGISLSHLQFVDDTKFFCYGEEDSFSILNHILAFFESISRFKINRRHDPKQI-GFWTPVVDNVRKRLA
        +K V+G I++ F++GRDG+ L HLQF  DT  FC  +E+SF  LNH++  FE +   KINR  D  +   FW P+ + + KRLA
Subjt:  NKSVEGGILKGFEVGRDGISLSHLQFVDDTKFFCYGEEDSFSILNHILAFFESISRFKINRRHDPKQI-GFWTPVVDNVRKRLA

XP_017233746.1 PREDICTED: uncharacterized protein LOC108207825 [Daucus carota subsp. sativus]1.0e-1138.46Show/hide
Query:  LNVEHYFAVNRLTESEELEATVLCLDGVALKCHHWEERRQSIGRWEEFRRLVLRQL------------LLTKQ---------------ASLENLDDDTLE
        L VE YFA  +LTE E LEA  + +DG AL+ + WE +R+ I RWE+ +  +LRQ             L T Q               A L+ + +D L 
Subjt:  LNVEHYFAVNRLTESEELEATVLCLDGVALKCHHWEERRQSIGRWEEFRRLVLRQL------------LLTKQ---------------ASLENLDDDTLE

Query:  GKFIDGLKEDIKMEMRVNRLVGLTLLMEMA
        G F++GLKEDIK E+RV   + L   ME+A
Subjt:  GKFIDGLKEDIKMEMRVNRLVGLTLLMEMA

XP_038904464.1 uncharacterized protein LOC120090832 [Benincasa hispida]3.8e-1441.41Show/hide
Query:  VEHYFAVNRLTESEELEATVLCLDGVALKCHHWEERRQSIGRWEEFR-RLVLR-----------QLLLTKQ---------------ASLENLDDDTLEGK
        VE YF VNRL+E +++EA +LCL+G AL+ H WEE R  +  W +F+  L+LR           Q L  KQ                SL++L D+ LE K
Subjt:  VEHYFAVNRLTESEELEATVLCLDGVALKCHHWEERRQSIGRWEEFR-RLVLR-----------QLLLTKQ---------------ASLENLDDDTLEGK

Query:  FIDGLKEDIKMEMRVNRLVGLTLLMEMA
        F+ GLK DI++EMR+ +L+GL   M MA
Subjt:  FIDGLKEDIKMEMRVNRLVGLTLLMEMA

TrEMBL top hitse value%identityAlignment
A0A5A7U9D7 WD repeat-containing protein 11 isoform X11.0e-1245.24Show/hide
Query:  NKSVEGGILKGFEVGRDGISLSHLQFVDDTKFFCYGEEDSFSILNHILAFFESISRFKINRRHDPKQI-GFWTPVVDNVRKRLA
        +K V+G I++ F++GRDG+ L HLQF  DT  FC  +E+SF  LNH++  FE +   KINR  D  +   FW P+ + + KRLA
Subjt:  NKSVEGGILKGFEVGRDGISLSHLQFVDDTKFFCYGEEDSFSILNHILAFFESISRFKINRRHDPKQI-GFWTPVVDNVRKRLA

A0A5D3C7U0 WD repeat-containing protein 11 isoform X11.0e-1245.24Show/hide
Query:  NKSVEGGILKGFEVGRDGISLSHLQFVDDTKFFCYGEEDSFSILNHILAFFESISRFKINRRHDPKQI-GFWTPVVDNVRKRLA
        +K V+G I++ F++GRDG+ L HLQF  DT  FC  +E+SF  LNH++  FE +   KINR  D  +   FW P+ + + KRLA
Subjt:  NKSVEGGILKGFEVGRDGISLSHLQFVDDTKFFCYGEEDSFSILNHILAFFESISRFKINRRHDPKQI-GFWTPVVDNVRKRLA

A0A7J6DJG0 Retrotrans_gag domain-containing protein8.5e-1241.58Show/hide
Query:  EHYFAVNRLTESEELEATVLCLDGVALKCHHWEERRQSIGRWEEFRRLVLRQLLLTKQAS-LENLDDDTLEGKFIDGLKEDIKMEMRVNRLVGLTLLMEM
        E YF + RL+  E+LEA VLCL+G AL    WE +RQ+I  WEE + L+LR+     +AS +E + D  L+  F+ GLK +I+  +R+    GL  +M++
Subjt:  EHYFAVNRLTESEELEATVLCLDGVALKCHHWEERRQSIGRWEEFRRLVLRQLLLTKQAS-LENLDDDTLEGKFIDGLKEDIKMEMRVNRLVGLTLLMEM

Query:  A
        A
Subjt:  A

A0A7J6DRD2 Retrotrans_gag domain-containing protein8.5e-1241.58Show/hide
Query:  EHYFAVNRLTESEELEATVLCLDGVALKCHHWEERRQSIGRWEEFRRLVLRQLLLTKQAS-LENLDDDTLEGKFIDGLKEDIKMEMRVNRLVGLTLLMEM
        E YF + RL+  E+LEA VLCL+G AL    WE +RQ+I  WEE + L+LR+     +AS +E + D  L+  F+ GLK +I+  +R+    GL  +M++
Subjt:  EHYFAVNRLTESEELEATVLCLDGVALKCHHWEERRQSIGRWEEFRRLVLRQLLLTKQAS-LENLDDDTLEGKFIDGLKEDIKMEMRVNRLVGLTLLMEM

Query:  A
        A
Subjt:  A

A0A7J6E0D9 Retrotrans_gag domain-containing protein8.5e-1241.58Show/hide
Query:  EHYFAVNRLTESEELEATVLCLDGVALKCHHWEERRQSIGRWEEFRRLVLRQLLLTKQAS-LENLDDDTLEGKFIDGLKEDIKMEMRVNRLVGLTLLMEM
        E YF + RL+  E+LEA VLCL+G AL    WE +RQ+I  WEE + L+LR+     +AS +E + D  L+  F+ GLK +I+  +R+    GL  +M++
Subjt:  EHYFAVNRLTESEELEATVLCLDGVALKCHHWEERRQSIGRWEEFRRLVLRQLLLTKQAS-LENLDDDTLEGKFIDGLKEDIKMEMRVNRLVGLTLLMEM

Query:  A
        A
Subjt:  A

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G36070.1 translocase inner membrane subunit 44-28.5e-0459.38Show/hide
Query:  LLLPNGYSINRRFSVFNEFSKKLKGEANKSVE
        LL  NG++ +RRFSVF+EFSKK++GEA+ + E
Subjt:  LLLPNGYSINRRFSVFNEFSKKLKGEANKSVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCTCCGCGCCTACTTCTTCTGCACGTCGTCTCCTACATCCGTTTCAGCTGCTCAATCACCGCCGCCTCTCTCCTGTTCATTGCTGTTGCCGCCGTGTCTTTCTTCC
GCTCGTGTCGCCGCCACTGTCGTCTTTCTTCAGTTCATGCCGCCGCAGCCTCCCTCCTAGAGCTTTTGCACTGATTTTCTACTCCCTTGTTGTACTGAGCTCCTGTACGA
GACCACAATTGCTCTTACCAAACGGTTACTCCATCAATCGTAGATTCAGTGTATTCAATGAGTTCTCGAAGAAACTGAAAGGAGAAGCTAACAAGAGTGTGGAGGGAGGT
ATTTTGAAAGGGTTCGAGGTGGGTAGGGATGGGATATCATTATCTCACCTTCAGTTTGTTGATGACACTAAATTCTTCTGTTATGGGGAGGAGGATTCTTTCTCTATACT
GAATCATATTTTAGCTTTCTTCGAGTCTATATCGAGGTTTAAGATAAATAGGAGACACGACCCCAAGCAGATTGGTTTTTGGACCCCGGTAGTGGATAATGTGAGAAAAA
GATTAGCCTCATGGAAAACAGTGGTGACGACTAAAATCGAAGGTTTGCGATTTGCTGAACGAGTTGCAACCGATACTGAGAAGGAACAAGGAAAGTGTCAGGACGAGGCC
GCAAGTAGTGCAGTTGATCTAAACGTGGAACACTATTTTGCTGTCAATCGGCTTACCGAATCGGAAGAATTGGAAGCGACTGTCCTATGTTTAGATGGTGTGGCTCTCAA
ATGCCATCATTGGGAGGAGCGACGACAGTCGATTGGTAGATGGGAGGAGTTTCGCCGCCTTGTTCTTCGACAACTTCTTCTGACCAAACAAGCTTCTTTAGAAAACCTAG
ATGATGATACTTTGGAGGGAAAGTTCATCGATGGGCTCAAAGAGGACATTAAGATGGAAATGCGGGTTAATCGACTCGTTGGGCTGACTTTGCTTATGGAAATGGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGCTCCGCGCCTACTTCTTCTGCACGTCGTCTCCTACATCCGTTTCAGCTGCTCAATCACCGCCGCCTCTCTCCTGTTCATTGCTGTTGCCGCCGTGTCTTTCTTCC
GCTCGTGTCGCCGCCACTGTCGTCTTTCTTCAGTTCATGCCGCCGCAGCCTCCCTCCTAGAGCTTTTGCACTGATTTTCTACTCCCTTGTTGTACTGAGCTCCTGTACGA
GACCACAATTGCTCTTACCAAACGGTTACTCCATCAATCGTAGATTCAGTGTATTCAATGAGTTCTCGAAGAAACTGAAAGGAGAAGCTAACAAGAGTGTGGAGGGAGGT
ATTTTGAAAGGGTTCGAGGTGGGTAGGGATGGGATATCATTATCTCACCTTCAGTTTGTTGATGACACTAAATTCTTCTGTTATGGGGAGGAGGATTCTTTCTCTATACT
GAATCATATTTTAGCTTTCTTCGAGTCTATATCGAGGTTTAAGATAAATAGGAGACACGACCCCAAGCAGATTGGTTTTTGGACCCCGGTAGTGGATAATGTGAGAAAAA
GATTAGCCTCATGGAAAACAGTGGTGACGACTAAAATCGAAGGTTTGCGATTTGCTGAACGAGTTGCAACCGATACTGAGAAGGAACAAGGAAAGTGTCAGGACGAGGCC
GCAAGTAGTGCAGTTGATCTAAACGTGGAACACTATTTTGCTGTCAATCGGCTTACCGAATCGGAAGAATTGGAAGCGACTGTCCTATGTTTAGATGGTGTGGCTCTCAA
ATGCCATCATTGGGAGGAGCGACGACAGTCGATTGGTAGATGGGAGGAGTTTCGCCGCCTTGTTCTTCGACAACTTCTTCTGACCAAACAAGCTTCTTTAGAAAACCTAG
ATGATGATACTTTGGAGGGAAAGTTCATCGATGGGCTCAAAGAGGACATTAAGATGGAAATGCGGGTTAATCGACTCGTTGGGCTGACTTTGCTTATGGAAATGGCCTAG
Protein sequenceShow/hide protein sequence
MCSAPTSSARRLLHPFQLLNHRRLSPVHCCCRRVFLPLVSPPLSSFFSSCRRSLPPRAFALIFYSLVVLSSCTRPQLLLPNGYSINRRFSVFNEFSKKLKGEANKSVEGG
ILKGFEVGRDGISLSHLQFVDDTKFFCYGEEDSFSILNHILAFFESISRFKINRRHDPKQIGFWTPVVDNVRKRLASWKTVVTTKIEGLRFAERVATDTEKEQGKCQDEA
ASSAVDLNVEHYFAVNRLTESEELEATVLCLDGVALKCHHWEERRQSIGRWEEFRRLVLRQLLLTKQASLENLDDDTLEGKFIDGLKEDIKMEMRVNRLVGLTLLMEMA