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Lag0025768 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025768
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr10:19838637..19839560
RNA-Seq ExpressionLag0025768
SyntenyLag0025768
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW28753.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.7e-1734.18Show/hide
Query:  IGNSQLHVNHLQFADDTLLFSIFCKDALVNLFDVVKIFELASVLNINYS------------------KVRKDLEVM--VVCTTPTFVGGIGIGNFQNRNL
        +G ++  V+HLQFADDT+ FS   ++ L  L  ++  F   S L +  S                  + +KD  V   VVC  P  +GG+G GN   RNL
Subjt:  IGNSQLHVNHLQFADDTLLFSIFCKDALVNLFDVVKIFELASVLNINYS------------------KVRKDLEVM--VVCTTPTFVGGIGIGNFQNRNL

Query:  ALLAKWIWRFLHKENTLWHKLIVAKYYKSDLISLWPSN-IQRSSHKSPWRFISSTIDLVSSRIKRSLGNVLATSFWHDSWIRCGILAKNFPRLYRL
        ALL KW+WR+  + + LWH++I++ Y      + W +N I R SH+ PW+ IS      SS  +  +GN     FW D W     L   +P L+R+
Subjt:  ALLAKWIWRFLHKENTLWHKLIVAKYYKSDLISLWPSN-IQRSSHKSPWRFISSTIDLVSSRIKRSLGNVLATSFWHDSWIRCGILAKNFPRLYRL

RVW30353.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]7.8e-1831.19Show/hide
Query:  IGNSQLHVNHLQFADDTLLFSIFCKDALVNLFDVVKIFELASVLNINYSK--------------------------VRKDLEVMVVCTTPTFVGGIGIGN
        +G ++  V+HLQFADDT+ FS   ++ L  L  ++ +F   S L +N +K                           R  L    V   P  +GG+G+GN
Subjt:  IGNSQLHVNHLQFADDTLLFSIFCKDALVNLFDVVKIFELASVLNINYSK--------------------------VRKDLEVMVVCTTPTFVGGIGIGN

Query:  FQNRNLALLAKWIWRFLHKENTLWHKLIVAKYYKSDLISLWPSN-IQRSSHKSPWRFISSTIDLVSSRIKRSLGNVLATSFWHDSWIRCGILAKNFPRLY
           RNLALL KW+WR+  + + LWH++I++ Y      + W +N + R SH+ PW+ I+      S   +  +GN     FW D W     L   +PRL+
Subjt:  FQNRNLALLAKWIWRFLHKENTLWHKLIVAKYYKSDLISLWPSN-IQRSSHKSPWRFISSTIDLVSSRIKRSLGNVLATSFWHDSWIRCGILAKNFPRLY

Query:  RL
        R+
Subjt:  RL

RVW91473.1 hypothetical protein CK203_038540 [Vitis vinifera]4.6e-1832.18Show/hide
Query:  IGNSQLHVNHLQFADDTLLFSIFCKDALVNLFDVVKIF----------ELASVLNINYSKVR-KDLEVMV---------------VCTTPTFVGGIGIGN
        +G ++  V+HLQFADDT+ FS   ++ L  L  ++ +F          E +S+  IN  +     L VM+               V   P  +GG+G GN
Subjt:  IGNSQLHVNHLQFADDTLLFSIFCKDALVNLFDVVKIF----------ELASVLNINYSKVR-KDLEVMV---------------VCTTPTFVGGIGIGN

Query:  FQNRNLALLAKWIWRFLHKENTLWHKLIVAKYYKSDLISLWPSN-IQRSSHKSPWRFISSTIDLVSSRIKRSLGNVLATSFWHDSWIRCGILAKNFPRLY
           RNLALL KW+WR+L + + LWH++I++ Y      + W +N + R SH+ PW+ I+      S   +  +GN     FW D W     L   +PRL+
Subjt:  FQNRNLALLAKWIWRFLHKENTLWHKLIVAKYYKSDLISLWPSN-IQRSSHKSPWRFISSTIDLVSSRIKRSLGNVLATSFWHDSWIRCGILAKNFPRLY

Query:  RL
        R+
Subjt:  RL

XP_010676054.1 PREDICTED: uncharacterized protein LOC104891964 [Beta vulgaris subsp. vulgaris]1.3e-1737.91Show/hide
Query:  NINYSKVRKDLEVMVVCTTPTFVGGIGIGNFQNRNLALLAKWIWRFLHKENTLWHKLIVAKYYKSDLISLWPSNIQRSSHKSPWRFISSTI-------DL
        N N  + R       +   P  +GG+G GN  ++NLALLAKWIWRFL     LW KL+  KY    LIS+  S++Q  SH  PW+ + ST+        L
Subjt:  NINYSKVRKDLEVMVVCTTPTFVGGIGIGNFQNRNLALLAKWIWRFLHKENTLWHKLIVAKYYKSDLISLWPSNIQRSSHKSPWRFISSTI-------DL

Query:  VSSRIKRSLGNVLATSFWHDSWIRCGILAKNFPRLYRLTDRPRVWLVRHGLLL
        + S+I+  +GN L +SFWHD W+  G+  K        TD+  ++L+ +G+L+
Subjt:  VSSRIKRSLGNVLATSFWHDSWIRCGILAKNFPRLYRLTDRPRVWLVRHGLLL

XP_038891595.1 uncharacterized protein LOC120080986 [Benincasa hispida]1.6e-2336.84Show/hide
Query:  PIGNSQLHVNHLQFADDTLLFS----------IFCKDALVNLFDVVKIFELASVLNINYSKVRKDLEVMVVCTTPTFVGGIGIGNFQNRNLALLAKWIWR
        P+G +  HV   Q   + +             I C D LV  F      +   + N+N+           +   P  +GG+GIGNF++RN  L    + R
Subjt:  PIGNSQLHVNHLQFADDTLLFS----------IFCKDALVNLFDVVKIFELASVLNINYSKVRKDLEVMVVCTTPTFVGGIGIGNFQNRNLALLAKWIWR

Query:  FLHKENTLWHKLIVAKYYKSDLISLWPSNIQRSSHKSPWRFISSTIDLVSSRIKRSLGNVLATSFWHDSWIRCGILAKNFPRLYRLTDRP
        F  + + L    IVAKYY  D I  WP+ I  +S K+PWRFI   I L++SRI+ +LG+  +TS W+DSW+ CGIL+  FPRLYRL  +P
Subjt:  FLHKENTLWHKLIVAKYYKSDLISLWPSNIQRSSHKSPWRFISSTIDLVSSRIKRSLGNVLATSFWHDSWIRCGILAKNFPRLYRLTDRP

TrEMBL top hitse value%identityAlignment
A0A438CZW6 Transposon TX1 uncharacterized 149 kDa protein8.4e-1834.18Show/hide
Query:  IGNSQLHVNHLQFADDTLLFSIFCKDALVNLFDVVKIFELASVLNINYS------------------KVRKDLEVM--VVCTTPTFVGGIGIGNFQNRNL
        +G ++  V+HLQFADDT+ FS   ++ L  L  ++  F   S L +  S                  + +KD  V   VVC  P  +GG+G GN   RNL
Subjt:  IGNSQLHVNHLQFADDTLLFSIFCKDALVNLFDVVKIFELASVLNINYS------------------KVRKDLEVM--VVCTTPTFVGGIGIGNFQNRNL

Query:  ALLAKWIWRFLHKENTLWHKLIVAKYYKSDLISLWPSN-IQRSSHKSPWRFISSTIDLVSSRIKRSLGNVLATSFWHDSWIRCGILAKNFPRLYRL
        ALL KW+WR+  + + LWH++I++ Y      + W +N I R SH+ PW+ IS      SS  +  +GN     FW D W     L   +P L+R+
Subjt:  ALLAKWIWRFLHKENTLWHKLIVAKYYKSDLISLWPSN-IQRSSHKSPWRFISSTIDLVSSRIKRSLGNVLATSFWHDSWIRCGILAKNFPRLYRL

A0A438D4H9 Transposon TX1 uncharacterized 149 kDa protein3.8e-1831.19Show/hide
Query:  IGNSQLHVNHLQFADDTLLFSIFCKDALVNLFDVVKIFELASVLNINYSK--------------------------VRKDLEVMVVCTTPTFVGGIGIGN
        +G ++  V+HLQFADDT+ FS   ++ L  L  ++ +F   S L +N +K                           R  L    V   P  +GG+G+GN
Subjt:  IGNSQLHVNHLQFADDTLLFSIFCKDALVNLFDVVKIFELASVLNINYSK--------------------------VRKDLEVMVVCTTPTFVGGIGIGN

Query:  FQNRNLALLAKWIWRFLHKENTLWHKLIVAKYYKSDLISLWPSN-IQRSSHKSPWRFISSTIDLVSSRIKRSLGNVLATSFWHDSWIRCGILAKNFPRLY
           RNLALL KW+WR+  + + LWH++I++ Y      + W +N + R SH+ PW+ I+      S   +  +GN     FW D W     L   +PRL+
Subjt:  FQNRNLALLAKWIWRFLHKENTLWHKLIVAKYYKSDLISLWPSN-IQRSSHKSPWRFISSTIDLVSSRIKRSLGNVLATSFWHDSWIRCGILAKNFPRLY

Query:  RL
        R+
Subjt:  RL

A0A438E9R1 LINE-1 retrotransposable element ORF2 protein1.1e-1730.85Show/hide
Query:  IGNSQLHVNHLQFADDTLLFSIFCKDALVNLFDVVKIFELASVLNINYSKV-------------------------RKDLEVMVVCTTPTFVGGIGIGNF
        +G ++  V+HLQFADDT+LF+   ++ +  L  ++ +F   S L +N  K+                         R  L        P  +GG+GIG  
Subjt:  IGNSQLHVNHLQFADDTLLFSIFCKDALVNLFDVVKIFELASVLNINYSKV-------------------------RKDLEVMVVCTTPTFVGGIGIGNF

Query:  QNRNLALLAKWIWRFLHKENTLWHKLIVAKYYKSDLISLWPSN-IQRSSHKSPWRFISSTIDLVSSRIKRSLGNVLATSFWHDSWIRCGILAKNFPRLYR
          RN ALL KW+WRF  +  +LWH++I++ Y      + W +N I R SH+ PW+ I+      S   +  +G+     FW D W    IL   +PRL+R
Subjt:  QNRNLALLAKWIWRFLHKENTLWHKLIVAKYYKSDLISLWPSN-IQRSSHKSPWRFISSTIDLVSSRIKRSLGNVLATSFWHDSWIRCGILAKNFPRLYR

Query:  L
        +
Subjt:  L

A0A438I438 Uncharacterized protein2.2e-1832.18Show/hide
Query:  IGNSQLHVNHLQFADDTLLFSIFCKDALVNLFDVVKIF----------ELASVLNINYSKVR-KDLEVMV---------------VCTTPTFVGGIGIGN
        +G ++  V+HLQFADDT+ FS   ++ L  L  ++ +F          E +S+  IN  +     L VM+               V   P  +GG+G GN
Subjt:  IGNSQLHVNHLQFADDTLLFSIFCKDALVNLFDVVKIF----------ELASVLNINYSKVR-KDLEVMV---------------VCTTPTFVGGIGIGN

Query:  FQNRNLALLAKWIWRFLHKENTLWHKLIVAKYYKSDLISLWPSN-IQRSSHKSPWRFISSTIDLVSSRIKRSLGNVLATSFWHDSWIRCGILAKNFPRLY
           RNLALL KW+WR+L + + LWH++I++ Y      + W +N + R SH+ PW+ I+      S   +  +GN     FW D W     L   +PRL+
Subjt:  FQNRNLALLAKWIWRFLHKENTLWHKLIVAKYYKSDLISLWPSN-IQRSSHKSPWRFISSTIDLVSSRIKRSLGNVLATSFWHDSWIRCGILAKNFPRLY

Query:  RL
        R+
Subjt:  RL

A0A6J1DFI2 uncharacterized protein LOC1110196244.2e-1737.78Show/hide
Query:  INYSKVRKDLEVMVVCTTPTFVGGIGIGNFQNRNLALLAKWIWRFLHKENTLWHKLIVAKY--YKSDLISLWPSNIQRSSHKSPWRFISSTIDLVSSRIK
        +N+ +V K LE           GG+G+GN + RN A LAKW+WRF H+ + LW K+IV+KY  + SD I    S +   S+ +PW+ I+S   + S  ++
Subjt:  INYSKVRKDLEVMVVCTTPTFVGGIGIGNFQNRNLALLAKWIWRFLHKENTLWHKLIVAKY--YKSDLISLWPSNIQRSSHKSPWRFISSTIDLVSSRIK

Query:  RSLGNVLATSFWHDSWIRCGILAKNFPRLYRLTDR
         S+G+ L   FW D+W+    L+  FPR+Y L+++
Subjt:  RSLGNVLATSFWHDSWIRCGILAKNFPRLYRLTDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein2.1e-0530.53Show/hide
Query:  GGIGIGNFQNRNLALLAKWIWRFLHKENTLWHKLIVAKYY-KSDLISLWPSNIQRSSHKS-PWRFISSTIDLVSSRIKRSLGNVLATSFWHDSWI
        GGIG  + +  NLALL K +WR L +  +L  K+  ++Y+ KSD     P N    S  S  W+ I ++ +++    +  +GN      W   W+
Subjt:  GGIGIGNFQNRNLALLAKWIWRFLHKENTLWHKLIVAKYY-KSDLISLWPSNIQRSSHKS-PWRFISSTIDLVSSRIKRSLGNVLATSFWHDSWI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCGAATTGTTTCTCATCCGATTGGAAATTCACAACTTCATGTGAATCATTTACAATTCGCTGATGATACTTTATTATTCTCCATCTTTTGTAAGGATGCATTGGT
TAACTTGTTCGATGTTGTTAAAATTTTTGAGCTGGCTTCTGTGTTGAATATTAACTATTCCAAAGTGAGGAAGGATCTAGAGGTGATGGTGGTATGTACAACTCCCACAT
TTGTTGGGGGTATTGGTATAGGTAATTTTCAGAATCGCAATCTTGCTCTACTAGCAAAGTGGATTTGGAGATTTTTACACAAGGAAAACACTCTATGGCATAAATTGATT
GTTGCTAAGTATTACAAATCTGATTTGATTAGTCTTTGGCCTAGCAATATTCAGAGAAGTTCTCACAAATCTCCTTGGAGATTCATTTCTTCTACTATTGACCTTGTATC
TTCCCGTATTAAAAGAAGTTTGGGTAATGTTCTTGCTACTTCATTCTGGCATGATTCGTGGATAAGATGTGGTATTCTGGCTAAGAATTTTCCTCGTCTATATCGTTTAA
CTGATCGTCCGAGGGTTTGGTTGGTGAGACATGGATTGCTTCTCAATCAGCATGGGACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCGAATTGTTTCTCATCCGATTGGAAATTCACAACTTCATGTGAATCATTTACAATTCGCTGATGATACTTTATTATTCTCCATCTTTTGTAAGGATGCATTGGT
TAACTTGTTCGATGTTGTTAAAATTTTTGAGCTGGCTTCTGTGTTGAATATTAACTATTCCAAAGTGAGGAAGGATCTAGAGGTGATGGTGGTATGTACAACTCCCACAT
TTGTTGGGGGTATTGGTATAGGTAATTTTCAGAATCGCAATCTTGCTCTACTAGCAAAGTGGATTTGGAGATTTTTACACAAGGAAAACACTCTATGGCATAAATTGATT
GTTGCTAAGTATTACAAATCTGATTTGATTAGTCTTTGGCCTAGCAATATTCAGAGAAGTTCTCACAAATCTCCTTGGAGATTCATTTCTTCTACTATTGACCTTGTATC
TTCCCGTATTAAAAGAAGTTTGGGTAATGTTCTTGCTACTTCATTCTGGCATGATTCGTGGATAAGATGTGGTATTCTGGCTAAGAATTTTCCTCGTCTATATCGTTTAA
CTGATCGTCCGAGGGTTTGGTTGGTGAGACATGGATTGCTTCTCAATCAGCATGGGACCTGA
Protein sequenceShow/hide protein sequence
MGRIVSHPIGNSQLHVNHLQFADDTLLFSIFCKDALVNLFDVVKIFELASVLNINYSKVRKDLEVMVVCTTPTFVGGIGIGNFQNRNLALLAKWIWRFLHKENTLWHKLI
VAKYYKSDLISLWPSNIQRSSHKSPWRFISSTIDLVSSRIKRSLGNVLATSFWHDSWIRCGILAKNFPRLYRLTDRPRVWLVRHGLLLNQHGT