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Lag0025776 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025776
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr10:20148340..20148729
RNA-Seq ExpressionLag0025776
SyntenyLag0025776
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU20758.1 hypothetical protein TSUD_239520 [Trifolium subterraneum]3.3e-0650.65Show/hide
Query:  MKGQTVADFVAKLT--PIEAEADPPRSEAEAKVHQDRASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIVKQVA
        +K Q +ADFV ++T  P E EA P    A+   +  R S   AEYEAL+AGMKLA+E+EV  L VQ+DSQL+  QV+
Subjt:  MKGQTVADFVAKLT--PIEAEADPPRSEAEAKVHQDRASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIVKQVA

GAU21317.1 hypothetical protein TSUD_372110 [Trifolium subterraneum]4.4e-0648.05Show/hide
Query:  MKGQTVADFVAKLT--PIEAEADPPRSEAEAKVHQDRASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIVKQVA
        +K Q +ADFV K+T  P E EA P     +   +   +    AEYEAL+AGMKLA+E+EV  L VQ+DSQL+  QV+
Subjt:  MKGQTVADFVAKLT--PIEAEADPPRSEAEAKVHQDRASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIVKQVA

GAU41232.1 hypothetical protein TSUD_280320, partial [Trifolium subterraneum]7.4e-0650.67Show/hide
Query:  MKGQTVADFVAKLTPIEAEADPPRSEAEAKVHQDRASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIVKQVA
        +K Q +ADFV ++T       PP    EA   Q    NN+AEYEAL+AGMKLARE+EV +L  ++DSQL+  QVA
Subjt:  MKGQTVADFVAKLTPIEAEADPPRSEAEAKVHQDRASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIVKQVA

RDX64711.1 Retrovirus-related Pol polyprotein from transposon 17.6, partial [Mucuna pruriens]9.7e-0640.59Show/hide
Query:  MKGQTVADFVAKLTP--------------IEAEADPPRSEA------------EAKVHQD-RASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIVKQ
        +K Q +ADF+ KLTP              ++  ++  RS A            E  +H D RASNN+AEYEALLA M+LARE+E   L  ++DS+L+ KQ
Subjt:  MKGQTVADFVAKLTP--------------IEAEADPPRSEA------------EAKVHQD-RASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIVKQ

Query:  V
        V
Subjt:  V

XP_034197316.1 uncharacterized protein LOC117612783, partial [Prunus dulcis]9.7e-0638.83Show/hide
Query:  KGQTVADFVAKLTPIEAEADPPRSEAEAKVHQD------------------------------RASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIV
        KGQ VADF+++LTP  A++ P     EA +H D                              R SNNEAEYEALLAG++LA+ +    + + +DSQLIV
Subjt:  KGQTVADFVAKLTPIEAEADPPRSEAEAKVHQD------------------------------RASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIV

Query:  KQV
         QV
Subjt:  KQV

TrEMBL top hitse value%identityAlignment
A0A2N9FP12 Ribonuclease H4.3e-0752Show/hide
Query:  MKGQTVADFVAKLT-PIEAEADPPRSEAEAKVHQDRASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIVKQV
        +K Q +ADF+A+ T P + E +    E EA   + RA+NNEAEYEALLAG+KL+  + + NL V++DSQLIV QV
Subjt:  MKGQTVADFVAKLT-PIEAEADPPRSEAEAKVHQDRASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIVKQV

A0A2N9GLE6 Ribonuclease H1.6e-0647.5Show/hide
Query:  MKGQTVADFVAKLT-PIEAE----ADPPRSEAEAKVH-QDRASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIVKQV
        +K Q +ADF+A+ T P E E      P + + E  +  + RA+NNEAEYEALLAG+KL++++ V NL V++DSQL+V Q+
Subjt:  MKGQTVADFVAKLT-PIEAE----ADPPRSEAEAKVH-QDRASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIVKQV

A0A2N9IZX2 Reverse transcriptase1.6e-0647.5Show/hide
Query:  MKGQTVADFVAKLT-PIEAE----ADPPRSEAEAKVH-QDRASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIVKQV
        +K Q +ADF+A+ T P E E      P + + E  +  + RA+NNEAEYEALLAG+KL++++ V NL V++DSQL+V Q+
Subjt:  MKGQTVADFVAKLT-PIEAE----ADPPRSEAEAKVH-QDRASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIVKQV

A0A2Z6MDV5 Ribonuclease H1.6e-0650.65Show/hide
Query:  MKGQTVADFVAKLT--PIEAEADPPRSEAEAKVHQDRASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIVKQVA
        +K Q +ADFV ++T  P E EA P    A+   +  R S   AEYEAL+AGMKLA+E+EV  L VQ+DSQL+  QV+
Subjt:  MKGQTVADFVAKLT--PIEAEADPPRSEAEAKVHQDRASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIVKQVA

A0A2Z6MWX7 RNase H domain-containing protein2.1e-0648.05Show/hide
Query:  MKGQTVADFVAKLT--PIEAEADPPRSEAEAKVHQDRASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIVKQVA
        +K Q +ADFV K+T  P E EA P     +   +   +    AEYEAL+AGMKLA+E+EV  L VQ+DSQL+  QV+
Subjt:  MKGQTVADFVAKLT--PIEAEADPPRSEAEAKVHQDRASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIVKQVA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGGCAAACAGTTGCAGATTTTGTGGCAAAGTTGACACCCATCGAGGCCGAGGCTGACCCTCCGAGGTCCGAGGCTGAGGCCAAGGTCCACCAAGACAGAGCTTC
AAACAATGAAGCAGAATATGAAGCACTCCTTGCAGGGATGAAGTTAGCTAGGGAGATTGAAGTTTCGAATCTCTTGGTTCAAAATGATTCACAATTAATTGTGAAACAGG
TGGCAGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGGCAAACAGTTGCAGATTTTGTGGCAAAGTTGACACCCATCGAGGCCGAGGCTGACCCTCCGAGGTCCGAGGCTGAGGCCAAGGTCCACCAAGACAGAGCTTC
AAACAATGAAGCAGAATATGAAGCACTCCTTGCAGGGATGAAGTTAGCTAGGGAGATTGAAGTTTCGAATCTCTTGGTTCAAAATGATTCACAATTAATTGTGAAACAGG
TGGCAGTATAG
Protein sequenceShow/hide protein sequence
MKGQTVADFVAKLTPIEAEADPPRSEAEAKVHQDRASNNEAEYEALLAGMKLAREIEVSNLLVQNDSQLIVKQVAV