; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0025780 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025780
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:20246053..20248453
RNA-Seq ExpressionLag0025780
SyntenyLag0025780
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.7e-3044.34Show/hide
Query:  IKEKSKRQRKNNHKKPQPKRKRSKKFSQPRQSVTFNEFFSKTF---HKKEKENFSTSYCINV----------EEVDNSKKGEQRTSIFVRIKPSTSRPSV
        I  K K +R     K +P + + + F QPRQS+T  EFF ++F   H KE    +  +  ++          EEVDNS + +QRTS+F RIKP T+R SV
Subjt:  IKEKSKRQRKNNHKKPQPKRKRSKKFSQPRQSVTFNEFFSKTF---HKKEKENFSTSYCINV----------EEVDNSKKGEQRTSIFVRIKPSTSRPSV

Query:  FQRMSMVATKEENQCSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTKCSLKFE
        FQR+S+   +EENQC TST TR S F+ LS+ TSKK R STS F  LK+ +DQ + +M +L+VK F E N D K+HS + SRMKRK S+ INT+ SL  +
Subjt:  FQRMSMVATKEENQCSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTKCSLKFE

Query:  GSHALRCSPFSQ
            +  +P ++
Subjt:  GSHALRCSPFSQ

KAA0041771.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.3e-3047.21Show/hide
Query:  IKEKSKRQRKNNHKKPQPKRKRSKKFSQPRQSVTFNEFFSKTF---HKKEKENFSTSYCINV----------EEVDNSKKGEQRTSIFVRIKPSTSRPSV
        I  K K +R     KP+P + + K F QPR+S+T  EF  ++F   H +E    +  +  N+          EE+DNS + +QRT +F RIKP T+R SV
Subjt:  IKEKSKRQRKNNHKKPQPKRKRSKKFSQPRQSVTFNEFFSKTF---HKKEKENFSTSYCINV----------EEVDNSKKGEQRTSIFVRIKPSTSRPSV

Query:  FQRMSMVATKEENQCSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTKCSL
        FQR+SM   KEENQC TST+ R S F+ LS+ TSKK R  TS F  LK+T+DQ + +M  L+ K F E N D K+HS +SSRMKRKFS+ INT+ SL
Subjt:  FQRMSMVATKEENQCSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTKCSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-3044.34Show/hide
Query:  IKEKSKRQRKNNHKKPQPKRKRSKKFSQPRQSVTFNEFFSKTF---HKKEKENFSTSYCINV----------EEVDNSKKGEQRTSIFVRIKPSTSRPSV
        I  K K +R     KP+P + + +   QPRQS+T  EFF ++F   H +E    +T +  ++          EEVDNS + +QRTS+F RIKP T+R SV
Subjt:  IKEKSKRQRKNNHKKPQPKRKRSKKFSQPRQSVTFNEFFSKTF---HKKEKENFSTSYCINV----------EEVDNSKKGEQRTSIFVRIKPSTSRPSV

Query:  FQRMSMVATKEENQCSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTKCSLKFE
        FQR+SM   +EENQC TST+ R S F+ LS+ TSKK R STS F  LK+T+DQ + +M +L+ K F E N D K+HS + SRMKRK S+ INT+ SL  +
Subjt:  FQRMSMVATKEENQCSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTKCSLKFE

Query:  GSHALRCSPFSQ
            +  +P ++
Subjt:  GSHALRCSPFSQ

KAA0052018.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.0e-3044.34Show/hide
Query:  IKEKSKRQRKNNHKKPQPKRKRSKKFSQPRQSVTFNEFFSKTFHKKEKENF------STSYCINV-------EEVDNSKKGEQRTSIFVRIKPSTSRPSV
        I  K K +R     KP+P + + + F QPRQS+T  EF  ++F +   E         T+  + V       EE+DNS + +QRTS+F RIKP T+R SV
Subjt:  IKEKSKRQRKNNHKKPQPKRKRSKKFSQPRQSVTFNEFFSKTFHKKEKENF------STSYCINV-------EEVDNSKKGEQRTSIFVRIKPSTSRPSV

Query:  FQRMSMVATKEENQCSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTKCSLKFE
        FQR+SM   KEENQC TST+ R S F+ LS+ TSKK R STS F  LK+T+DQ + +M  L+ K F E N D K+HS + S MKRK S+ INTK SL  +
Subjt:  FQRMSMVATKEENQCSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTKCSLKFE

Query:  GSHALRCSPFSQ
            +  +P ++
Subjt:  GSHALRCSPFSQ

TYK19591.1 hypothetical protein E5676_scaffold1274G00410 [Cucumis melo var. makuwa]4.0e-3046.67Show/hide
Query:  KPQPKRKRSKKFSQPRQSVTFNEFFSKTF---HKKEKENFSTSYCINV----------EEVDNSKKGEQRTSIFVRIKPSTSRPSVFQRMSMVATKEENQ
        KP+P + + + F QPR+S+T  EF  ++F   H +E    +     ++          +EVDNS K +QRTS+F RIKPS +R  VFQR+SM   +EENQ
Subjt:  KPQPKRKRSKKFSQPRQSVTFNEFFSKTF---HKKEKENFSTSYCINV----------EEVDNSKKGEQRTSIFVRIKPSTSRPSVFQRMSMVATKEENQ

Query:  CSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTK
        C  ST+TR S F+ LS+ TSKK + ST  F CLK+T++Q + +M +L+VK F E N+D ++HS +SSRMKRK S++INTK
Subjt:  CSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTK

TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein3.3e-3044.34Show/hide
Query:  IKEKSKRQRKNNHKKPQPKRKRSKKFSQPRQSVTFNEFFSKTF---HKKEKENFSTSYCINV----------EEVDNSKKGEQRTSIFVRIKPSTSRPSV
        I  K K +R     K +P + + + F QPRQS+T  EFF ++F   H KE    +  +  ++          EEVDNS + +QRTS+F RIKP T+R SV
Subjt:  IKEKSKRQRKNNHKKPQPKRKRSKKFSQPRQSVTFNEFFSKTF---HKKEKENFSTSYCINV----------EEVDNSKKGEQRTSIFVRIKPSTSRPSV

Query:  FQRMSMVATKEENQCSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTKCSLKFE
        FQR+S+   +EENQC TST TR S F+ LS+ TSKK R STS F  LK+ +DQ + +M +L+VK F E N D K+HS + SRMKRK S+ INT+ SL  +
Subjt:  FQRMSMVATKEENQCSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTKCSLKFE

Query:  GSHALRCSPFSQ
            +  +P ++
Subjt:  GSHALRCSPFSQ

A0A5A7TJH2 Retrotransposon gag protein1.1e-3047.21Show/hide
Query:  IKEKSKRQRKNNHKKPQPKRKRSKKFSQPRQSVTFNEFFSKTF---HKKEKENFSTSYCINV----------EEVDNSKKGEQRTSIFVRIKPSTSRPSV
        I  K K +R     KP+P + + K F QPR+S+T  EF  ++F   H +E    +  +  N+          EE+DNS + +QRT +F RIKP T+R SV
Subjt:  IKEKSKRQRKNNHKKPQPKRKRSKKFSQPRQSVTFNEFFSKTF---HKKEKENFSTSYCINV----------EEVDNSKKGEQRTSIFVRIKPSTSRPSV

Query:  FQRMSMVATKEENQCSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTKCSL
        FQR+SM   KEENQC TST+ R S F+ LS+ TSKK R  TS F  LK+T+DQ + +M  L+ K F E N D K+HS +SSRMKRKFS+ INT+ SL
Subjt:  FQRMSMVATKEENQCSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTKCSL

A0A5A7TQ06 Retrotransposon gag protein6.6e-3144.34Show/hide
Query:  IKEKSKRQRKNNHKKPQPKRKRSKKFSQPRQSVTFNEFFSKTF---HKKEKENFSTSYCINV----------EEVDNSKKGEQRTSIFVRIKPSTSRPSV
        I  K K +R     KP+P + + +   QPRQS+T  EFF ++F   H +E    +T +  ++          EEVDNS + +QRTS+F RIKP T+R SV
Subjt:  IKEKSKRQRKNNHKKPQPKRKRSKKFSQPRQSVTFNEFFSKTF---HKKEKENFSTSYCINV----------EEVDNSKKGEQRTSIFVRIKPSTSRPSV

Query:  FQRMSMVATKEENQCSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTKCSLKFE
        FQR+SM   +EENQC TST+ R S F+ LS+ TSKK R STS F  LK+T+DQ + +M +L+ K F E N D K+HS + SRMKRK S+ INT+ SL  +
Subjt:  FQRMSMVATKEENQCSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTKCSLKFE

Query:  GSHALRCSPFSQ
            +  +P ++
Subjt:  GSHALRCSPFSQ

A0A5A7U9V3 Retrotransposon gag protein1.9e-3044.34Show/hide
Query:  IKEKSKRQRKNNHKKPQPKRKRSKKFSQPRQSVTFNEFFSKTFHKKEKENF------STSYCINV-------EEVDNSKKGEQRTSIFVRIKPSTSRPSV
        I  K K +R     KP+P + + + F QPRQS+T  EF  ++F +   E         T+  + V       EE+DNS + +QRTS+F RIKP T+R SV
Subjt:  IKEKSKRQRKNNHKKPQPKRKRSKKFSQPRQSVTFNEFFSKTFHKKEKENF------STSYCINV-------EEVDNSKKGEQRTSIFVRIKPSTSRPSV

Query:  FQRMSMVATKEENQCSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTKCSLKFE
        FQR+SM   KEENQC TST+ R S F+ LS+ TSKK R STS F  LK+T+DQ + +M  L+ K F E N D K+HS + S MKRK S+ INTK SL  +
Subjt:  FQRMSMVATKEENQCSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTKCSLKFE

Query:  GSHALRCSPFSQ
            +  +P ++
Subjt:  GSHALRCSPFSQ

A0A5D3D7Q8 Uncharacterized protein1.9e-3046.67Show/hide
Query:  KPQPKRKRSKKFSQPRQSVTFNEFFSKTF---HKKEKENFSTSYCINV----------EEVDNSKKGEQRTSIFVRIKPSTSRPSVFQRMSMVATKEENQ
        KP+P + + + F QPR+S+T  EF  ++F   H +E    +     ++          +EVDNS K +QRTS+F RIKPS +R  VFQR+SM   +EENQ
Subjt:  KPQPKRKRSKKFSQPRQSVTFNEFFSKTF---HKKEKENFSTSYCINV----------EEVDNSKKGEQRTSIFVRIKPSTSRPSVFQRMSMVATKEENQ

Query:  CSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTK
        C  ST+TR S F+ LS+ TSKK + ST  F CLK+T++Q + +M +L+VK F E N+D ++HS +SSRMKRK S++INTK
Subjt:  CSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCAAGAATCATTCTTGCTATAATCAAAGAAAAGAGCAAACGTCAAAGAAAGAACAATCATAAGAAACCTCAACCTAAGAG
GAAGAGAAGTAAAAAGTTTTCTCAACCTCGACAGTCGGTGACTTTTAATGAATTCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAAAACTTTTCAACTTCCTATTGCA
TCAATGTAGAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACTTCCATCTTCGTTCGCATCAAGCCTTCAACTAGTCGGCCTTCGGTATTCCAAAGAATGAGTATG
GTCGCGACAAAAGAAGAAAATCAATGTTCGACGTCCACCTTCACTCGACCTTCAACTTTCCAAGGGCTAAGTGTCCCCACATCGAAGAAAAGTCGATCTTCAACATCTGT
CTTTGGTTGCCTCAAAGTAACAGACGATCAACCTAAAGGAAAGATGAACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAAAAACTTCATAGTAGCATCT
CATCACGTATGAAGAGGAAGTTTTCTATTCTCATAAATACGAAATGTTCCTTAAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTCCCTTCTCCCAAGCTCGAAGGTTC
TCACGCGCTTCGCTGGAGTTCATTCTCCCCAAGTTTGAAGGTTCTCACGCGCTTCGCTACAGTTCCTTTGCTCCAAGTGCGAAGGATCTTATGTTGTACCCTACTGCGTT
GCTCCTTCTTTCTCCAAGTTCGAAGGTTCTGACGTTGCGCTGCTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGGAGTTCCTTCCCCCAAGTTCGAAGGT
TCTCACACGCTTCACTACAGTTCCTCCTCTCCAAGTTCGAAGGTTCTCACGTGTTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACATGCTTCACTAGAGTT
CCTTCTCCCCAAGTTCGAAGGTTCTCACGCTGCGCTGTTGCGCTGCTTTCTTCTCCAAGTTTGAAAGTTCGCACGTTGTACTGCTGCGTGCTGCTCCCTTCTCTCTCCAA
GTTTGAAGTTTCTGACGCTGCACTGCTTCCTTCACCAAGTTTGAAGGTTCTCACATTGTGTTGCATCACTGTTCCTTCTCCAAGTTCGAAGGTTCCCACATTGCGCTGTT
GTGTTGCTTCCTTCTCCAAGTTCGAAGGTTCTGACGTTGCGCTACTTCCTTCACCAAGTTCGAAGGTTCTCGCACTGCACTGTTTCGTTGTTCCTTCTCCAAGTTCGAAG
GTTCTCATGTTGCTTTGTTGTTGTTTCTTCTTCAATTTCGAAGGTTCACGCGGCACTGCTTCGTTGTTCCTTCTTCAAGTTCGAAGGTTCTCACATTGCGCTGTTGCGCT
GCTTCATTCTCCAAGTTCAAAAGTTTGCATGTTGTGTTGTTGCACGTTGCTTCCTTCTCTCTCAAAGTTCTCACGTTGCTACGCTGCTTGTTCTGCCAGTCTCTCAAGGT
TCGAAGGGCACTGTTACGCTTCATTTTCTCTCCAAGTTCAAAGGTTCTCATGCCACGTCGCTTCGTTGTTTCTTCTCCAAGTTCAAAGGTTCTCATACTACGCTGCTACG
TTGCTTCCTTCTCCAAGTTCGAAAGTTCACCCGCTGTATGCTGCTATTTCTTCTCCAAGTTCGAAGGTTCGCATGTTGTACGTTGCTTCGCTGTTGTTCCCTTTTCAAGT
TTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCAAGAATCATTCTTGCTATAATCAAAGAAAAGAGCAAACGTCAAAGAAAGAACAATCATAAGAAACCTCAACCTAAGAG
GAAGAGAAGTAAAAAGTTTTCTCAACCTCGACAGTCGGTGACTTTTAATGAATTCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAAAACTTTTCAACTTCCTATTGCA
TCAATGTAGAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACTTCCATCTTCGTTCGCATCAAGCCTTCAACTAGTCGGCCTTCGGTATTCCAAAGAATGAGTATG
GTCGCGACAAAAGAAGAAAATCAATGTTCGACGTCCACCTTCACTCGACCTTCAACTTTCCAAGGGCTAAGTGTCCCCACATCGAAGAAAAGTCGATCTTCAACATCTGT
CTTTGGTTGCCTCAAAGTAACAGACGATCAACCTAAAGGAAAGATGAACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAAAAACTTCATAGTAGCATCT
CATCACGTATGAAGAGGAAGTTTTCTATTCTCATAAATACGAAATGTTCCTTAAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTCCCTTCTCCCAAGCTCGAAGGTTC
TCACGCGCTTCGCTGGAGTTCATTCTCCCCAAGTTTGAAGGTTCTCACGCGCTTCGCTACAGTTCCTTTGCTCCAAGTGCGAAGGATCTTATGTTGTACCCTACTGCGTT
GCTCCTTCTTTCTCCAAGTTCGAAGGTTCTGACGTTGCGCTGCTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGGAGTTCCTTCCCCCAAGTTCGAAGGT
TCTCACACGCTTCACTACAGTTCCTCCTCTCCAAGTTCGAAGGTTCTCACGTGTTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACATGCTTCACTAGAGTT
CCTTCTCCCCAAGTTCGAAGGTTCTCACGCTGCGCTGTTGCGCTGCTTTCTTCTCCAAGTTTGAAAGTTCGCACGTTGTACTGCTGCGTGCTGCTCCCTTCTCTCTCCAA
GTTTGAAGTTTCTGACGCTGCACTGCTTCCTTCACCAAGTTTGAAGGTTCTCACATTGTGTTGCATCACTGTTCCTTCTCCAAGTTCGAAGGTTCCCACATTGCGCTGTT
GTGTTGCTTCCTTCTCCAAGTTCGAAGGTTCTGACGTTGCGCTACTTCCTTCACCAAGTTCGAAGGTTCTCGCACTGCACTGTTTCGTTGTTCCTTCTCCAAGTTCGAAG
GTTCTCATGTTGCTTTGTTGTTGTTTCTTCTTCAATTTCGAAGGTTCACGCGGCACTGCTTCGTTGTTCCTTCTTCAAGTTCGAAGGTTCTCACATTGCGCTGTTGCGCT
GCTTCATTCTCCAAGTTCAAAAGTTTGCATGTTGTGTTGTTGCACGTTGCTTCCTTCTCTCTCAAAGTTCTCACGTTGCTACGCTGCTTGTTCTGCCAGTCTCTCAAGGT
TCGAAGGGCACTGTTACGCTTCATTTTCTCTCCAAGTTCAAAGGTTCTCATGCCACGTCGCTTCGTTGTTTCTTCTCCAAGTTCAAAGGTTCTCATACTACGCTGCTACG
TTGCTTCCTTCTCCAAGTTCGAAAGTTCACCCGCTGTATGCTGCTATTTCTTCTCCAAGTTCGAAGGTTCGCATGTTGTACGTTGCTTCGCTGTTGTTCCCTTTTCAAGT
TTGA
Protein sequenceShow/hide protein sequence
MVVFFVVAEQSRIILAIIKEKSKRQRKNNHKKPQPKRKRSKKFSQPRQSVTFNEFFSKTFHKKEKENFSTSYCINVEEVDNSKKGEQRTSIFVRIKPSTSRPSVFQRMSM
VATKEENQCSTSTFTRPSTFQGLSVPTSKKSRSSTSVFGCLKVTDDQPKGKMNNLEVKLFDEVNSDKKLHSSISSRMKRKFSILINTKCSLKFEGSHALRCSPFSQARRF
SRASLEFILPKFEGSHALRYSSFAPSAKDLMLYPTALLLLSPSSKVLTLRCFLLSKFEGSHALRWSSFPQVRRFSHASLQFLLSKFEGSHVFRCSSFSPSSKVLTCFTRV
PSPQVRRFSRCAVALLSSPSLKVRTLYCCVLLPSLSKFEVSDAALLPSPSLKVLTLCCITVPSPSSKVPTLRCCVASFSKFEGSDVALLPSPSSKVLALHCFVVPSPSSK
VLMLLCCCFFFNFEGSRGTASLFLLQVRRFSHCAVALLHSPSSKVCMLCCCTLLPSLSKFSRCYAACSASLSRFEGHCYASFSLQVQRFSCHVASLFLLQVQRFSYYAAT
LLPSPSSKVHPLYAAISSPSSKVRMLYVASLLFPFQV