; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0025785 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025785
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr10:20377504..20378766
RNA-Seq ExpressionLag0025785
SyntenyLag0025785
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5458726.1 hypothetical protein F2P56_022736, partial [Juglans regia]3.5e-2331.38Show/hide
Query:  KGQKVKALLDK-TNNWKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTRLWKSLWSLKVVPKTK
        K +KV  L+D  T  WK+ +I   F  ++   IL +    + + D+ IW   K+G F+V+SAYHL +E+  R     S + +S  +WK +W L+V    K
Subjt:  KGQKVKALLDK-TNNWKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTRLWKSLWSLKVVPKTK

Query:  ICTWKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWIGCIPSSQSLFVLCRKNWTPMDYWAWMVDNFTKDDL
        I  WK +  I+P  +N+ KK +  +PLC +C  N ES  H++W C  +  VW     S+  +     +    M  W  M++    +D+
Subjt:  ICTWKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWIGCIPSSQSLFVLCRKNWTPMDYWAWMVDNFTKDDL

KAG6628833.1 hypothetical protein CIPAW_14G039600 [Carya illinoinensis]1.3e-2230.81Show/hide
Query:  KVKALLDKTNN-WKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTRLWKSLWSLKVVPKTKICT
        KV  L+D  N  WK D+I++ F   D E I  +    +  +D+++W P K G FSVKSAY L  ER  R     S   K   +WK +W+L V    K+  
Subjt:  KVKALLDKTNN-WKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTRLWKSLWSLKVVPKTKICT

Query:  WKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWIGCIPSSQSLFVLCRKNWTPMDYWAWMVDNFTKDDL
        WK+ + ++P K N+ ++ V  + +C +C++  E++ H++W C  +  VW         +   C   W   + WA M      +D+
Subjt:  WKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWIGCIPSSQSLFVLCRKNWTPMDYWAWMVDNFTKDDL

XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]2.3e-2239.46Show/hide
Query:  VKALLDKTNNWKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTRLWKSLWSLKVVPKTKICTWK
        V  L+D  N W+ D + Q F  +D+E IL +       +DE++WH DKKG +SVKS Y LAL +N  NE   SN   S+RLWK  W L +  K KI  W+
Subjt:  VKALLDKTNNWKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTRLWKSLWSLKVVPKTKICTWK

Query:  IIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVW
         +K I+P   N+ K+     P+C  C+   E+ +H++ ECK ++++W
Subjt:  IIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVW

XP_018829825.2 uncharacterized protein LOC108997893 [Juglans regia]2.3e-2235.53Show/hide
Query:  KVKALLD-KTNNWKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTRLWKSLWSLKVVPKTKICT
        KV AL+D     W  ++I   F  ++ + IL      ++++D IIWH  K G+FSVKSAYHL  +R   N    S  +    +WK +W L V P  K   
Subjt:  KVKALLD-KTNNWKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTRLWKSLWSLKVVPKTKICT

Query:  WKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWIGC
        W+  +  +P ++N+ KK V  +PLC +C +  ES  H++W C+ ++ VW  C
Subjt:  WKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWIGC

XP_035551510.1 uncharacterized protein LOC118349853 [Juglans regia]5.9e-2327.35Show/hide
Query:  KVKALLDKT-NNWKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTRLWKSLWSLKVVPKTKICT
        +V  LLD++ ++W ++++ + F  ++ E I ++   ++ S+D++IW P K+G F+VKSAY+L  ER SR +   S   K+  +WK++WSL+V    K   
Subjt:  KVKALLDKT-NNWKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTRLWKSLWSLKVVPKTKICT

Query:  WKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWIGCIPSSQSLFVLCRKNWTP-----MDYWAWMVDNFTKDDLSKGALENSHL
        WK+   ++  + N+ ++ V  +  C +C++  E++ H++W+C  ++ VW G   + Q         WT      + +W   +     +DL   A+  + L
Subjt:  WKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWIGCIPSSQSLFVLCRKNWTP-----MDYWAWMVDNFTKDDLSKGALENSHL

Query:  KPEDAVEPRSQASH--HQPEKLKANQRKLSTYVVWFESAGKGGFQ
          ED  E + Q  +   +P +L+ +      +V+W +   +GGF+
Subjt:  KPEDAVEPRSQASH--HQPEKLKANQRKLSTYVVWFESAGKGGFQ

TrEMBL top hitse value%identityAlignment
A0A2I4FDV1 uncharacterized protein LOC1089978931.1e-2235.53Show/hide
Query:  KVKALLD-KTNNWKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTRLWKSLWSLKVVPKTKICT
        KV AL+D     W  ++I   F  ++ + IL      ++++D IIWH  K G+FSVKSAYHL  +R   N    S  +    +WK +W L V P  K   
Subjt:  KVKALLD-KTNNWKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTRLWKSLWSLKVVPKTKICT

Query:  WKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWIGC
        W+  +  +P ++N+ KK V  +PLC +C +  ES  H++W C+ ++ VW  C
Subjt:  WKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWIGC

A0A2K3N033 Ribonuclease H (Fragment)1.4e-2234.97Show/hide
Query:  KVKALLDKTNN-WKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTRLWKSLWSLKVVPKTKICT
        KV+ L+D  NN WK+DII Q F P + + IL +   + +  D + W   + G +SVKS YH  +E +    A+ SN S+   LWK++W L V PK     
Subjt:  KVKALLDKTNN-WKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTRLWKSLWSLKVVPKTKICT

Query:  WKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWIGCIPSSQSLFVLCRKNWTPMDYWAWMVDNFTKD
        W+++K  +P K N+ K+GV  +PLC  C    E++NH+  +C+ ++QVW     SS +L +   +     D+  +M++N  K+
Subjt:  WKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWIGCIPSSQSLFVLCRKNWTPMDYWAWMVDNFTKD

A0A2N9HHI1 Uncharacterized protein1.1e-2239.72Show/hide
Query:  WKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISK-STRLWKSLWSLKVVPKTKICTWKIIKYIIPNK
        W  D++ Q F P +VE IL++   +   KD +IW   KKG FSVK AY + L  +  +EAS S + +  ++LWK++WS  V PK K+  W+  K I+P K
Subjt:  WKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISK-STRLWKSLWSLKVVPKTKICTWKIIKYIIPNK

Query:  ANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWIGC
        AN+  KG+  +  C+ C+   E+ +HL+W C+ +Q+VW  C
Subjt:  ANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWIGC

A0A2N9IMU5 Uncharacterized protein1.1e-2236.63Show/hide
Query:  VKALLDKTNN-WKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTR-LWKSLWSLKVVPKTKICT
        V +L+D  +  W  D + Q F P+DVE I  +       +D++IW   K GNFSVKSAY+L L ++  +  S SN     R LW S+WS +V PK ++  
Subjt:  VKALLDKTNN-WKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTR-LWKSLWSLKVVPKTKICT

Query:  WKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWIGC---IPSSQSL------FVLC
        W+    I+P K  +  KG+  +  C+ C+++ E+++H++W+C+ +Q++W+ C   IPSS S+      FVLC
Subjt:  WKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWIGC---IPSSQSL------FVLC

A0A6P9ERU0 uncharacterized protein LOC1183498532.9e-2327.35Show/hide
Query:  KVKALLDKT-NNWKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTRLWKSLWSLKVVPKTKICT
        +V  LLD++ ++W ++++ + F  ++ E I ++   ++ S+D++IW P K+G F+VKSAY+L  ER SR +   S   K+  +WK++WSL+V    K   
Subjt:  KVKALLDKT-NNWKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTRLWKSLWSLKVVPKTKICT

Query:  WKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWIGCIPSSQSLFVLCRKNWTP-----MDYWAWMVDNFTKDDLSKGALENSHL
        WK+   ++  + N+ ++ V  +  C +C++  E++ H++W+C  ++ VW G   + Q         WT      + +W   +     +DL   A+  + L
Subjt:  WKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWIGCIPSSQSLFVLCRKNWTP-----MDYWAWMVDNFTKDDLSKGALENSHL

Query:  KPEDAVEPRSQASH--HQPEKLKANQRKLSTYVVWFESAGKGGFQ
          ED  E + Q  +   +P +L+ +      +V+W +   +GGF+
Subjt:  KPEDAVEPRSQASH--HQPEKLKANQRKLSTYVVWFESAGKGGFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.7e-0526.87Show/hide
Query:  WKSLWSLKVVPKTKICTWKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWI
        +K++W    +PK     W  +++ +  K  ++  G    PLC+ C  + E+  HL ++C+ +++VWI
Subjt:  WKSLWSLKVVPKTKICTWKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWI

AT3G09510.1 Ribonuclease H-like superfamily protein5.6e-1125.55Show/hide
Query:  WKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTRLWKSLWSLKVVPKTKICTWKIIKYIIPNKA
        W D  I+Q     D   I  +   +    D+IIW+ +  G ++V+S Y L     S N  + +    S  L   +W+L ++PK K   W+ +   +    
Subjt:  WKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTRLWKSLWSLKVVPKTKICTWKIIKYIIPNKA

Query:  NILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVW
         +  +G+ ++P C  C +  ES NH ++ C  +   W
Subjt:  NILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVW

AT3G25270.1 Ribonuclease H-like superfamily protein3.2e-0633.33Show/hide
Query:  LWSLKVVPKTKICTWKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVW
        +W LK  PK K   WK++   +    N+ ++ +  +P C  C +  E+S HL ++C  +QQVW
Subjt:  LWSLKVVPKTKICTWKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVW

AT3G26855.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein6.4e-0731.15Show/hide
Query:  LWSLKVVPKTKICTWKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQ
        +WSLK+ PK K+  WK +   +P  A +L + + + P C  C +++E+  H+++ C  +Q+
Subjt:  LWSLKVVPKTKICTWKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQ

AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.9e-0428.12Show/hide
Query:  KSLWSLKVVPKTKICTWKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQV
        K++W    +PK    +W  I++ +P +  +L  G+ V  LC+LC    E+  HL ++C  + ++
Subjt:  KSLWSLKVVPKTKICTWKIIKYIIPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGCCAAAAGGTCAAAGCCCTCCTTGATAAAACCAACAATTGGAAGGATGACATTATAACCCAGTGCTTTGGCCCTCAAGATGTCGAAGACATATTAAACATGTC
TACTGGAGAGATTAGCTCGAAAGACGAAATCATTTGGCATCCGGACAAAAAAGGAAATTTCTCAGTTAAGAGTGCATACCATCTTGCTTTGGAAAGGAACTCAAGAAATG
AAGCCTCCCAATCTAACATCTCTAAATCAACCCGCCTATGGAAAAGCCTATGGAGCCTGAAGGTGGTGCCCAAGACAAAGATATGCACATGGAAGATCATCAAGTATATC
ATCCCAAACAAAGCTAATATCCTAAAAAAGGGAGTAGATGTGAATCCTTTATGCATTCTATGCCAGAAGAATTGGGAATCCTCTAACCACCTCATGTGGGAATGCAAAAT
TTCCCAACAAGTGTGGATTGGATGCATTCCTAGCTCACAAAGCCTCTTTGTTTTGTGTAGGAAAAACTGGACTCCTATGGATTATTGGGCGTGGATGGTAGATAATTTTA
CAAAGGATGATCTATCTAAAGGGGCGCTGGAAAATTCTCACCTCAAGCCCGAAGATGCAGTGGAGCCGAGGAGCCAAGCGAGTCATCATCAACCAGAGAAGCTGAAGGCG
AACCAAAGGAAGTTGAGTACATACGTTGTCTGGTTCGAGAGTGCTGGGAAAGGAGGTTTTCAGTTGAAGGAGATCACCATTGTTGTTGAGTCGGACGCCTTAGGAGTAAT
CAATGCTCCGAACGGCGATAAGGAAGACATATCAGACACGAGAGTCATCATCGACGCCATTCTCAGTCTGATAGGAAGCTTGAAACCGGTTTCTTTTCGTCATTGTTGTC
AAACCCGTAACACAGTAGTCCACTATGTGGCTCAAAAATCTTGTTTTTGGAATTTTGATTCTGATTTTGTGTCTGACCAGAGGAACTCACTTTCGCAGGAAAATTGGTGT
TTTTTGGACCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGCCAAAAGGTCAAAGCCCTCCTTGATAAAACCAACAATTGGAAGGATGACATTATAACCCAGTGCTTTGGCCCTCAAGATGTCGAAGACATATTAAACATGTC
TACTGGAGAGATTAGCTCGAAAGACGAAATCATTTGGCATCCGGACAAAAAAGGAAATTTCTCAGTTAAGAGTGCATACCATCTTGCTTTGGAAAGGAACTCAAGAAATG
AAGCCTCCCAATCTAACATCTCTAAATCAACCCGCCTATGGAAAAGCCTATGGAGCCTGAAGGTGGTGCCCAAGACAAAGATATGCACATGGAAGATCATCAAGTATATC
ATCCCAAACAAAGCTAATATCCTAAAAAAGGGAGTAGATGTGAATCCTTTATGCATTCTATGCCAGAAGAATTGGGAATCCTCTAACCACCTCATGTGGGAATGCAAAAT
TTCCCAACAAGTGTGGATTGGATGCATTCCTAGCTCACAAAGCCTCTTTGTTTTGTGTAGGAAAAACTGGACTCCTATGGATTATTGGGCGTGGATGGTAGATAATTTTA
CAAAGGATGATCTATCTAAAGGGGCGCTGGAAAATTCTCACCTCAAGCCCGAAGATGCAGTGGAGCCGAGGAGCCAAGCGAGTCATCATCAACCAGAGAAGCTGAAGGCG
AACCAAAGGAAGTTGAGTACATACGTTGTCTGGTTCGAGAGTGCTGGGAAAGGAGGTTTTCAGTTGAAGGAGATCACCATTGTTGTTGAGTCGGACGCCTTAGGAGTAAT
CAATGCTCCGAACGGCGATAAGGAAGACATATCAGACACGAGAGTCATCATCGACGCCATTCTCAGTCTGATAGGAAGCTTGAAACCGGTTTCTTTTCGTCATTGTTGTC
AAACCCGTAACACAGTAGTCCACTATGTGGCTCAAAAATCTTGTTTTTGGAATTTTGATTCTGATTTTGTGTCTGACCAGAGGAACTCACTTTCGCAGGAAAATTGGTGT
TTTTTGGACCCCTAG
Protein sequenceShow/hide protein sequence
MKGQKVKALLDKTNNWKDDIITQCFGPQDVEDILNMSTGEISSKDEIIWHPDKKGNFSVKSAYHLALERNSRNEASQSNISKSTRLWKSLWSLKVVPKTKICTWKIIKYI
IPNKANILKKGVDVNPLCILCQKNWESSNHLMWECKISQQVWIGCIPSSQSLFVLCRKNWTPMDYWAWMVDNFTKDDLSKGALENSHLKPEDAVEPRSQASHHQPEKLKA
NQRKLSTYVVWFESAGKGGFQLKEITIVVESDALGVINAPNGDKEDISDTRVIIDAILSLIGSLKPVSFRHCCQTRNTVVHYVAQKSCFWNFDSDFVSDQRNSLSQENWC
FLDP