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Lag0025788 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025788
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr10:20484346..20484915
RNA-Seq ExpressionLag0025788
SyntenyLag0025788
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]3.1e-2141.71Show/hide
Query:  VARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTR----PLVFQRLSVTTRRDKKEQ
        VARA VF+RLS+ E E +  Q T++  + S F+RL++   EE     T   T+PSAF+RL++   K   T  AP + R     L  Q  S    + K+  
Subjt:  VARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTR----PLVFQRLSVTTRRDKKEQ

Query:  STSLISH-----PLQNEDAMKNEKITKADGEIRSVVPSRMKRKTFGTVDT-DGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITVV
        S  L+ H      +++    +     K + EIRS VPSRMKRKTF T++T  GSLKVKR DV++TNP +EDS+Q E + SC HIT++
Subjt:  STSLISH-----PLQNEDAMKNEKITKADGEIRSVVPSRMKRKTFGTVDT-DGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITVV

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]5.4e-2139.89Show/hide
Query:  SSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTRPLVFQRLSVTTRRDKKEQSTSLISH--------------PLQNEDA
        S  RP VF RLSM   E  R  S PN+ R S F+RL     KEEST  A   TRP  F+RL V+ +++ +     + +H                + ++ 
Subjt:  SSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTRPLVFQRLSVTTRRDKKEQSTSLISH--------------PLQNEDA

Query:  MKNEKI--------------------TKADGEIRSVVPSRMKRKTFGTVDT-DGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITVV
        M   K+                    TK +GEI S VPSRMKRKTF T++T  GSLKVKR DV++TNP +E S+Q E +TSC HIT++
Subjt:  MKNEKI--------------------TKADGEIRSVVPSRMKRKTFGTVDT-DGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITVV

XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]5.4e-2139.89Show/hide
Query:  SSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTRPLVFQRLSVTTRRDKKEQSTSLISH--------------PLQNEDA
        S  RP VF RLSM   E  R  S PN+ R S F+RL     KEEST  A   TRP  F+RL V+ +++ +     + +H                + ++ 
Subjt:  SSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTRPLVFQRLSVTTRRDKKEQSTSLISH--------------PLQNEDA

Query:  MKNEKI--------------------TKADGEIRSVVPSRMKRKTFGTVDT-DGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITVV
        M   K+                    TK +GEI S VPSRMKRKTF T++T  GSLKVKR DV++TNP +E S+Q E +TSC HIT++
Subjt:  MKNEKI--------------------TKADGEIRSVVPSRMKRKTFGTVDT-DGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITVV

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]5.4e-2139.89Show/hide
Query:  SSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTRPLVFQRLSVTTRRDKKEQSTSLISH--------------PLQNEDA
        S  RP VF RLSM   E  R  S PN+ R S F+RL     KEEST  A   TRP  F+RL V+ +++ +     + +H                + ++ 
Subjt:  SSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTRPLVFQRLSVTTRRDKKEQSTSLISH--------------PLQNEDA

Query:  MKNEKI--------------------TKADGEIRSVVPSRMKRKTFGTVDT-DGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITVV
        M   K+                    TK +GEI S VPSRMKRKTF T++T  GSLKVKR DV++TNP +E S+Q E +TSC HIT++
Subjt:  MKNEKI--------------------TKADGEIRSVVPSRMKRKTFGTVDT-DGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITVV

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]5.4e-2139.89Show/hide
Query:  SSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTRPLVFQRLSVTTRRDKKEQSTSLISH--------------PLQNEDA
        S  RP VF RLSM   E  R  S PN+ R S F+RL     KEEST  A   TRP  F+RL V+ +++ +     + +H                + ++ 
Subjt:  SSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTRPLVFQRLSVTTRRDKKEQSTSLISH--------------PLQNEDA

Query:  MKNEKI--------------------TKADGEIRSVVPSRMKRKTFGTVDT-DGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITVV
        M   K+                    TK +GEI S VPSRMKRKTF T++T  GSLKVKR DV++TNP +E S+Q E +TSC HIT++
Subjt:  MKNEKI--------------------TKADGEIRSVVPSRMKRKTFGTVDT-DGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITVV

TrEMBL top hitse value%identityAlignment
A0A5A7SND9 Gag protease polyprotein2.2e-2044.74Show/hide
Query:  SSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTRPLVFQRLSVTTRRDKKEQSTSLISHPLQNEDAMKNEKITKADGEIR
        S+ RPSVF+R+S  I ++    ST + TR SAFQRLN   AK+  + S    TR   F+RLSV+  RD+K+ S S+               +   D EIR
Subjt:  SSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTRPLVFQRLSVTTRRDKKEQSTSLISHPLQNEDAMKNEKITKADGEIR

Query:  SVVPSRMKRKTFGTVDTDGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITV
        S  PSRMKRK F +V+T+GSLKVKR DVV T P + + + E   T C H+TV
Subjt:  SVVPSRMKRKTFGTVDTDGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITV

A0A5A7TZU9 Ribonuclease H8.3e-2043.42Show/hide
Query:  SSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTRPLVFQRLSVTTRRDKKEQSTSLISHPLQNEDAMKNEKITKADGEIR
        S+ RPSVF+R+S  I ++    ST + TR SAFQRLN   AK+  + S    TR   F+RLSV+  RD+K+ S S+               +   D EIR
Subjt:  SSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTRPLVFQRLSVTTRRDKKEQSTSLISHPLQNEDAMKNEKITKADGEIR

Query:  SVVPSRMKRKTFGTVDTDGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITV
        S  PSRMKRK F +V+T+GSLKVKR DVV T P + + + E     C H+T+
Subjt:  SVVPSRMKRKTFGTVDTDGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITV

A0A5D3BIH8 Uncharacterized protein8.3e-2043.42Show/hide
Query:  SSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTRPLVFQRLSVTTRRDKKEQSTSLISHPLQNEDAMKNEKITKADGEIR
        S+ RPSVF+R+S  I ++    ST + TR SAFQRLN   AK+  + S    TR   F+RLSV+  RD+K+ S S+               +   D EIR
Subjt:  SSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTRPLVFQRLSVTTRRDKKEQSTSLISHPLQNEDAMKNEKITKADGEIR

Query:  SVVPSRMKRKTFGTVDTDGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITV
        S  PSRMKRK F +V+T+GSLKVKR DVV T P + + + E     C H+T+
Subjt:  SVVPSRMKRKTFGTVDTDGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITV

A0A5D3DB95 RNase H domain-containing protein8.3e-2042.55Show/hide
Query:  VARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTRPLVFQRLSVTTRRD---KKEQS
        VARA VF+RLS+ E E +  Q T++  R S F+RL++   EE   +     T+PSAF+RL++   K   T  AP++ R L    L V T      KK++S
Subjt:  VARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTRPLVFQRLSVTTRRD---KKEQS

Query:  TSLIS--HPLQNEDAMKNEK-----ITKADGEIRSVVPSRMKRKTFGTVDT-DGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITVV
        TS +S  H +++ D             K + EI S VP RMKRKTF T++T  GSLKVKR DV++TNP +EDS Q E + S  HIT++
Subjt:  TSLIS--HPLQNEDAMKNEK-----ITKADGEIRSVVPSRMKRKTFGTVDT-DGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITVV

A0A5D3DXC7 Reverse transcriptase domain-containing protein1.5e-2141.71Show/hide
Query:  VARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTR----PLVFQRLSVTTRRDKKEQ
        VARA VF+RLS+ E E +  Q T++  + S F+RL++   EE     T   T+PSAF+RL++   K   T  AP + R     L  Q  S    + K+  
Subjt:  VARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTR----PLVFQRLSVTTRRDKKEQ

Query:  STSLISH-----PLQNEDAMKNEKITKADGEIRSVVPSRMKRKTFGTVDT-DGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITVV
        S  L+ H      +++    +     K + EIRS VPSRMKRKTF T++T  GSLKVKR DV++TNP +EDS+Q E + SC HIT++
Subjt:  STSLISH-----PLQNEDAMKNEKITKADGEIRSVVPSRMKRKTFGTVDT-DGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCCAGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAG
GTTAAGTATGCCCATTGGGGAAGAGGGGAGAACATTTTCAACTCCAAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGCGAAAGAAGAGAGTACAT
TTTCAGCTCCGGATATGACTCGGCCATTGGTTTTTCAGAGGTTAAGTGTTACCACAAGAAGAGATAAAAAAGAACAGTCTACTTCATTGATATCTCATCCACTTCAAAAT
GAAGATGCGATGAAAAATGAAAAGATCACTAAGGCCGATGGAGAAATTCGTAGTGTAGTTCCTTCACGAATGAAAAGAAAAACCTTTGGTACTGTCGATACAGATGGTTC
CTTGAAGGTAAAGCGACGTGATGTTGTCATCACCAATCCTTCGGAAGAAGATAGTGACCAGGAAGAAGTACAAACCTCTTGTCTTCATATCACTGTTGTGTTGGCTTTTT
GGCCCTTAATCTCAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCCAGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAG
GTTAAGTATGCCCATTGGGGAAGAGGGGAGAACATTTTCAACTCCAAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGCGAAAGAAGAGAGTACAT
TTTCAGCTCCGGATATGACTCGGCCATTGGTTTTTCAGAGGTTAAGTGTTACCACAAGAAGAGATAAAAAAGAACAGTCTACTTCATTGATATCTCATCCACTTCAAAAT
GAAGATGCGATGAAAAATGAAAAGATCACTAAGGCCGATGGAGAAATTCGTAGTGTAGTTCCTTCACGAATGAAAAGAAAAACCTTTGGTACTGTCGATACAGATGGTTC
CTTGAAGGTAAAGCGACGTGATGTTGTCATCACCAATCCTTCGGAAGAAGATAGTGACCAGGAAGAAGTACAAACCTCTTGTCTTCATATCACTGTTGTGTTGGCTTTTT
GGCCCTTAATCTCAAATTAA
Protein sequenceShow/hide protein sequence
MSPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEGRTFSTPNVTRPSAFQRLNMPIAKEESTFSAPDMTRPLVFQRLSVTTRRDKKEQSTSLISHPLQN
EDAMKNEKITKADGEIRSVVPSRMKRKTFGTVDTDGSLKVKRRDVVITNPSEEDSDQEEVQTSCLHITVVLAFWPLISN