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Lag0025838 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025838
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionheterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic
Genome locationchr10:21816793..21817149
RNA-Seq ExpressionLag0025838
SyntenyLag0025838
Gene Ontology termsGO:0008299 - isoprenoid biosynthetic process (biological process)
GO:0004659 - prenyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON33651.1 Polyprenyl synthetase-related [Parasponia andersonii]5.7e-2163.44Show/hide
Query:  LLTMLLSSSNLYLPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI
        + ++L SSS+LYLP +  N I P RCS+ +SSS S+STRS S QFDLKTYW  LIA+I++ LDEA+ V+YP +IY AMRYSVLA+GAKRAPP+
Subjt:  LLTMLLSSSNLYLPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI

PON40297.1 Polyprenyl synthetase-related [Trema orientale]5.7e-2163.44Show/hide
Query:  LLTMLLSSSNLYLPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI
        + ++L SSS+LYLP +  N I P RCS+ +SSS S+STRS S QFDLKTYW  LIA+I++ LDEA+ V+YP +IY AMRYSVLA+GAKRAPP+
Subjt:  LLTMLLSSSNLYLPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI

XP_007041720.2 PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Theobroma cacao]5.3e-1960Show/hide
Query:  MALLTMLLSSSNLYLPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI
        +A  T++ S  NLYLP+K  N   P RC S +S SAS S  S   QFDLKTYW  LIA+IN+ L+EA+ V+YP +IYEAMRYSVLA+GAKRAPP+
Subjt:  MALLTMLLSSSNLYLPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI

XP_022140742.1 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Momordica charantia]1.2e-2677.08Show/hide
Query:  MALLTMLLSSSNLY-LPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI
        MAL TMLLSSSNLY L  K PNLI P RC    SSSASVS RS S+ FDLKTYW KLI+QINR+LDEAV V+YP +IYEAMRYSVLAEGAKRAPPI
Subjt:  MALLTMLLSSSNLY-LPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI

XP_030483625.1 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Cannabis sativa]4.8e-2062.64Show/hide
Query:  TMLLSSSNLYLPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI
        ++L SSS LYLP K  N I P RCSSP     S+ST+S S QFDLKTYW  LIA+I++ LDEA+ V+YP +IY AMRYSVLA+GAKR+PP+
Subjt:  TMLLSSSNLYLPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI

TrEMBL top hitse value%identityAlignment
A0A2P5AAU1 Polyprenyl synthetase-related2.8e-2163.44Show/hide
Query:  LLTMLLSSSNLYLPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI
        + ++L SSS+LYLP +  N I P RCS+ +SSS S+STRS S QFDLKTYW  LIA+I++ LDEA+ V+YP +IY AMRYSVLA+GAKRAPP+
Subjt:  LLTMLLSSSNLYLPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI

A0A2P5AUQ9 Polyprenyl synthetase-related2.8e-2163.44Show/hide
Query:  LLTMLLSSSNLYLPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI
        + ++L SSS+LYLP +  N I P RCS+ +SSS S+STRS S QFDLKTYW  LIA+I++ LDEA+ V+YP +IY AMRYSVLA+GAKRAPP+
Subjt:  LLTMLLSSSNLYLPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI

A0A6J1CHX6 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic5.7e-2777.08Show/hide
Query:  MALLTMLLSSSNLY-LPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI
        MAL TMLLSSSNLY L  K PNLI P RC    SSSASVS RS S+ FDLKTYW KLI+QINR+LDEAV V+YP +IYEAMRYSVLAEGAKRAPPI
Subjt:  MALLTMLLSSSNLY-LPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI

A0A7J6DWV3 Uncharacterized protein2.3e-2062.64Show/hide
Query:  TMLLSSSNLYLPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI
        ++L SSS LYLP K  N I P RCSSP     S+ST+S S QFDLKTYW  LIA+I++ LDEA+ V+YP +IY AMRYSVLA+GAKR+PP+
Subjt:  TMLLSSSNLYLPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI

A0A803NQV3 Uncharacterized protein2.3e-2062.64Show/hide
Query:  TMLLSSSNLYLPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI
        ++L SSS LYLP K  N I P RCSSP     S+ST+S S QFDLKTYW  LIA+I++ LDEA+ V+YP +IY AMRYSVLA+GAKR+PP+
Subjt:  TMLLSSSNLYLPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI

SwissProt top hitse value%identityAlignment
A0A0U3BRC5 Geranylfarnesyl diphosphate synthase, chloroplastic7.8e-0540Show/hide
Query:  NLYLPRKCPNLISPFRCS-SPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI
        +L+LP      +S    S S S+ S        + QFD K Y ++ I  +N+ LD A+ VR P +I+EAMRYS+L  G KR  PI
Subjt:  NLYLPRKCPNLISPFRCS-SPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI

P34802 Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic1.7e-0437.63Show/hide
Query:  RKCP-NLISP--FRCSSPSSSSASVSTRSISVQ-----------FDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI
        R CP  L  P  FR     SSS+S+ + S+  +           FD  +Y +     +N+ LD AV +R P +I+EAMRYS+LA G KR  P+
Subjt:  RKCP-NLISP--FRCSSPSSSSASVSTRSISVQ-----------FDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI

Q39108 Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic4.9e-1553.75Show/hide
Query:  PRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI
        P   P  +SP    S SSS+        S+ FDL+TYW  LI +IN+ LDEA+ V++P  IYEAMRYSVLA+GAKRAPP+
Subjt:  PRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI

Q42698 Geranylgeranyl pyrophosphate synthase, chloroplastic4.6e-0545.45Show/hide
Query:  SPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI
        S S S   V+  S S  FD K Y +     +N+ L++AVLVR P +I+E+MRYS+LA G KR  P+
Subjt:  SPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI

Q43133 Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic2.0e-0538.78Show/hide
Query:  LLTMLLSSSNLYLPRKCPNLISPFRCSSPSSSSASV-----STRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI
        +LT   S S   L    P  ++P R  S SSSS+ +     + +S S  FD  +Y ++    +N+ LD AV +R P +I+EAMRYS+LA G KR  P+
Subjt:  LLTMLLSSSNLYLPRKCPNLISPFRCSSPSSSSASV-----STRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI

Arabidopsis top hitse value%identityAlignment
AT2G18620.1 Terpenoid synthases superfamily protein6.1e-0539.47Show/hide
Query:  ISPFRCSSPSSSSASVSTRS---ISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI
        I PF      S+  SV+ R    I   FD  +Y +     +N  LD AV +R P +I+EA+RYS+LA G KR  P+
Subjt:  ISPFRCSSPSSSSASVSTRS---ISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI

AT2G23800.1 geranylgeranyl pyrophosphate synthase 25.2e-0441.38Show/hide
Query:  VSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI
        VS  + + +FD   Y +     +N+ L+EA+ V  P +I+EAMRY++LA G KR  PI
Subjt:  VSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI

AT4G36810.1 geranylgeranyl pyrophosphate synthase 11.2e-0537.63Show/hide
Query:  RKCP-NLISP--FRCSSPSSSSASVSTRSISVQ-----------FDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI
        R CP  L  P  FR     SSS+S+ + S+  +           FD  +Y +     +N+ LD AV +R P +I+EAMRYS+LA G KR  P+
Subjt:  RKCP-NLISP--FRCSSPSSSSASVSTRSISVQ-----------FDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI

AT4G38460.1 geranylgeranyl reductase3.5e-1653.75Show/hide
Query:  PRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI
        P   P  +SP    S SSS+        S+ FDL+TYW  LI +IN+ LDEA+ V++P  IYEAMRYSVLA+GAKRAPP+
Subjt:  PRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTACTTACAATGTTGCTCTCATCTTCCAATCTTTATCTCCCACGAAAATGCCCCAATCTTATCTCCCCATTTCGCTGTTCTTCTCCTTCTTCTTCTTCAGCCTC
CGTTTCTACTCGATCCATATCGGTCCAGTTTGATCTGAAAACGTATTGGGTGAAATTGATCGCCCAGATTAATCGGAATCTCGATGAAGCCGTTTTGGTTCGGTATCCGA
CGGAGATCTACGAGGCTATGCGATACTCCGTCTTGGCCGAGGGGGCCAAGCGAGCCCCGCCGATTAGGGGAAATCAAATCGCCGGAGAAATGGAAGCCAATAGAAAGGGC
ATTTTAGTAATTTTACCTTTTAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCTACTTACAATGTTGCTCTCATCTTCCAATCTTTATCTCCCACGAAAATGCCCCAATCTTATCTCCCCATTTCGCTGTTCTTCTCCTTCTTCTTCTTCAGCCTC
CGTTTCTACTCGATCCATATCGGTCCAGTTTGATCTGAAAACGTATTGGGTGAAATTGATCGCCCAGATTAATCGGAATCTCGATGAAGCCGTTTTGGTTCGGTATCCGA
CGGAGATCTACGAGGCTATGCGATACTCCGTCTTGGCCGAGGGGGCCAAGCGAGCCCCGCCGATTAGGGGAAATCAAATCGCCGGAGAAATGGAAGCCAATAGAAAGGGC
ATTTTAGTAATTTTACCTTTTAGATGA
Protein sequenceShow/hide protein sequence
MALLTMLLSSSNLYLPRKCPNLISPFRCSSPSSSSASVSTRSISVQFDLKTYWVKLIAQINRNLDEAVLVRYPTEIYEAMRYSVLAEGAKRAPPIRGNQIAGEMEANRKG
ILVILPFR