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Lag0025845 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025845
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr10:21983388..21986869
RNA-Seq ExpressionLag0025845
SyntenyLag0025845
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046416.1 gag/pol protein [Cucumis melo var. makuwa]9.8e-1185.71Show/hide
Query:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
        RDSRKSTSG VF+LNGGAVVWRSI +GCI DSTME EYVAAC
Subjt:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
KAA0054309.1 gag/pol protein [Cucumis melo var. makuwa]3.4e-1188.1Show/hide
Query:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
        RDSRKSTSG VF+LNGGAVVWRSI +GCI DSTMEVEYVAAC
Subjt:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
KAA0056412.1 gag/pol protein [Cucumis melo var. makuwa]4.4e-1188.1Show/hide
Query:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
        +DSRKST G VFSLNGGAVVWRSI +GCITDSTMEVEYVAAC
Subjt:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
TYK11834.1 gag/pol protein [Cucumis melo var. makuwa]7.5e-1185.71Show/hide
Query:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
        +DSRKSTSG VF+LNGGAVVWRSI +GCI DSTMEVEYVAAC
Subjt:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
TYK24106.1 gag/pol protein [Cucumis melo var. makuwa]9.8e-1185.71Show/hide
Query:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
        RDSRKSTSG VF+LNGGAVVWRSI +GCI DSTME EYVAAC
Subjt:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein4.7e-1185.71Show/hide
Query:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
        RDSRKSTSG VF+LNGGAVVWRSI +GCI DSTME EYVAAC
Subjt:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
A0A5A7ULH1 Gag/pol protein1.6e-1188.1Show/hide
Query:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
        RDSRKSTSG VF+LNGGAVVWRSI +GCI DSTMEVEYVAAC
Subjt:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
A0A5A7UTG2 Retrovirus-related pol polyprotein from transposon tnt 1-944.7e-1185.71Show/hide
Query:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
        RDSRKSTSGLVF+LNGGAVVWRSI +GCI D TME EYVAAC
Subjt:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
A0A5D3CKY7 Gag/pol protein3.6e-1185.71Show/hide
Query:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
        +DSRKSTSG VF+LNGGAVVWRSI +GCI DSTMEVEYVAAC
Subjt:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
A0A5D3DZ05 Gag/pol protein2.1e-1188.1Show/hide
Query:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
        +DSRKST G VFSLNGGAVVWRSI +GCITDSTMEVEYVAAC
Subjt:  RDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.1e-0447.5Show/hide
Query:  DSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAA
        D+RKS++G +F+ +GGA+ W+S  + C+  ST E EY+AA
Subjt:  DSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAA
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTTTCGTTGAAATGCTTGGAGATCGAAGAAGATCTAGACGAAACTGTGAAGCGAGTAGTTTCTTCAGTTTCAAAGCTTTGGGGAGTCGTCGGCGGCCGGCCGGC
GACAGGGAGCGGTGGCCGACCGCCGGCGCCGACCGCCGGAGATGTGAAGAAGAAGATGGAGGGGTTGAGGGAAGAAGATGAAGAAGTGGGTGGAGGCGACAGCGAGCGGT
GGCCTCCGGCCGCCGGGCGCCAGAGCTATGAGAAGAAGGAAGAAGATGAAGTGGAGAAGGAGTGGAAGAGTCGTCATACCTATGAGGATCCATTGTCCTATTGGCAGGCA
GTGAATGACGATACACTGACTCTGACTTCCAGACTAACAAGGGATTCTAGGAAATCTACGTCAGGGTTAGTGTTCAGCCTTAACGGGGGAGCTGTAGTTTGGAGAAGCAT
CAATGAGGGATGCATAACAGATTCCACTATGGAGGTTGAGTATGTAGCTGCTTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTTTTCGTTGAAATGCTTGGAGATCGAAGAAGATCTAGACGAAACTGTGAAGCGAGTAGTTTCTTCAGTTTCAAAGCTTTGGGGAGTCGTCGGCGGCCGGCCGGC
GACAGGGAGCGGTGGCCGACCGCCGGCGCCGACCGCCGGAGATGTGAAGAAGAAGATGGAGGGGTTGAGGGAAGAAGATGAAGAAGTGGGTGGAGGCGACAGCGAGCGGT
GGCCTCCGGCCGCCGGGCGCCAGAGCTATGAGAAGAAGGAAGAAGATGAAGTGGAGAAGGAGTGGAAGAGTCGTCATACCTATGAGGATCCATTGTCCTATTGGCAGGCA
GTGAATGACGATACACTGACTCTGACTTCCAGACTAACAAGGGATTCTAGGAAATCTACGTCAGGGTTAGTGTTCAGCCTTAACGGGGGAGCTGTAGTTTGGAGAAGCAT
CAATGAGGGATGCATAACAGATTCCACTATGGAGGTTGAGTATGTAGCTGCTTGTTAA
Protein sequenceShow/hide protein sequence
MFFSLKCLEIEEDLDETVKRVVSSVSKLWGVVGGRPATGSGGRPPAPTAGDVKKKMEGLREEDEEVGGGDSERWPPAAGRQSYEKKEEDEVEKEWKSRHTYEDPLSYWQA
VNDDTLTLTSRLTRDSRKSTSGLVFSLNGGAVVWRSINEGCITDSTMEVEYVAAC