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Lag0025852 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025852
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibosomal RNA small subunit methyltransferase G
Genome locationchr10:22084437..22085519
RNA-Seq ExpressionLag0025852
SyntenyLag0025852
Gene Ontology termsGO:0035493 - SNARE complex assembly (biological process)
GO:0000323 - lytic vacuole (cellular component)
GO:0005768 - endosome (cellular component)
GO:0000149 - SNARE binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMP00367.1 hypothetical protein COLO4_12726 [Corchorus olitorius]5.2e-0454.84Show/hide
Query:  DQNLLHSCGGLTFLRVEGKELENFKVNPAVETGYENLALVRLLFEMRLPSIRKSLVICAHGL
        D  L  SCG           L   KV P VETGYENL LVRLL EMR+P+IRKS V  A GL
Subjt:  DQNLLHSCGGLTFLRVEGKELENFKVNPAVETGYENLALVRLLFEMRLPSIRKSLVICAHGL
XP_004138497.1 uncharacterized protein LOC101221288 isoform X2 [Cucumis sativus]6.8e-0466.67Show/hide
Query:  FKVNPAVETGYENLALVRLLFEMRLPSIRKSLV---ICAHGL
        + V P VETGYENL LVRLL EMRLPSIRKS V   +  HG+
Subjt:  FKVNPAVETGYENLALVRLLFEMRLPSIRKSLV---ICAHGL
XP_008458208.1 PREDICTED: uncharacterized protein LOC103497707 [Cucumis melo]6.8e-0466.67Show/hide
Query:  FKVNPAVETGYENLALVRLLFEMRLPSIRKSLV---ICAHGL
        + V P VETGYENL LVRLL EMRLPSIRKS V   +  HG+
Subjt:  FKVNPAVETGYENLALVRLLFEMRLPSIRKSLV---ICAHGL
XP_031743124.1 uncharacterized protein LOC101221288 isoform X1 [Cucumis sativus]6.8e-0466.67Show/hide
Query:  FKVNPAVETGYENLALVRLLFEMRLPSIRKSLV---ICAHGL
        + V P VETGYENL LVRLL EMRLPSIRKS V   +  HG+
Subjt:  FKVNPAVETGYENLALVRLLFEMRLPSIRKSLV---ICAHGL
XP_031743125.1 uncharacterized protein LOC101221288 isoform X3 [Cucumis sativus]6.8e-0466.67Show/hide
Query:  FKVNPAVETGYENLALVRLLFEMRLPSIRKSLV---ICAHGL
        + V P VETGYENL LVRLL EMRLPSIRKS V   +  HG+
Subjt:  FKVNPAVETGYENLALVRLLFEMRLPSIRKSLV---ICAHGL
TrEMBL top hitse value%identityAlignment
A0A1R3JZW1 Uncharacterized protein2.5e-0454.84Show/hide
Query:  DQNLLHSCGGLTFLRVEGKELENFKVNPAVETGYENLALVRLLFEMRLPSIRKSLVICAHGL
        D  L  SCG           L   KV P VETGYENL LVRLL EMR+P+IRKS V  A GL
Subjt:  DQNLLHSCGGLTFLRVEGKELENFKVNPAVETGYENLALVRLLFEMRLPSIRKSLVICAHGL
A0A438JMB6 Uncharacterized protein3.3e-0476.47Show/hide
Query:  FKVNPAVETGYENLALVRLLFEMRLPSIRKSLVI
        F + P VETGYENL LVRLL EMRLPSIRKS V+
Subjt:  FKVNPAVETGYENLALVRLLFEMRLPSIRKSLVI
A0A5D3BTH5 Ribosomal RNA small subunit methyltransferase G3.3e-0466.67Show/hide
Query:  FKVNPAVETGYENLALVRLLFEMRLPSIRKSLV---ICAHGL
        + V P VETGYENL LVRLL EMRLPSIRKS V   +  HG+
Subjt:  FKVNPAVETGYENLALVRLLFEMRLPSIRKSLV---ICAHGL
A5BY58 Uncharacterized protein3.3e-0476.47Show/hide
Query:  FKVNPAVETGYENLALVRLLFEMRLPSIRKSLVI
        F + P VETGYENL LVRLL EMRLPSIRKS V+
Subjt:  FKVNPAVETGYENLALVRLLFEMRLPSIRKSLVI
D7UCC8 Uncharacterized protein3.3e-0476.47Show/hide
Query:  FKVNPAVETGYENLALVRLLFEMRLPSIRKSLVI
        F + P VETGYENL LVRLL EMRLPSIRKS V+
Subjt:  FKVNPAVETGYENLALVRLLFEMRLPSIRKSLVI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G45990.1 unknown protein2.7e-0670.27Show/hide
Query:  VNPAVETGYENLALVRLLFEMRLPSIRKSLVICAHGL
        V P VETGYENL LVRLL E ++PSIRKS V  A GL
Subjt:  VNPAVETGYENLALVRLLFEMRLPSIRKSLVICAHGL
AT2G45990.2 unknown protein2.7e-0670.27Show/hide
Query:  VNPAVETGYENLALVRLLFEMRLPSIRKSLVICAHGL
        V P VETGYENL LVRLL E ++PSIRKS V  A GL
Subjt:  VNPAVETGYENLALVRLLFEMRLPSIRKSLVICAHGL
AT2G45990.3 unknown protein2.7e-0670.27Show/hide
Query:  VNPAVETGYENLALVRLLFEMRLPSIRKSLVICAHGL
        V P VETGYENL LVRLL E ++PSIRKS V  A GL
Subjt:  VNPAVETGYENLALVRLLFEMRLPSIRKSLVICAHGL
AT2G45990.4 unknown protein2.7e-0670.27Show/hide
Query:  VNPAVETGYENLALVRLLFEMRLPSIRKSLVICAHGL
        V P VETGYENL LVRLL E ++PSIRKS V  A GL
Subjt:  VNPAVETGYENLALVRLLFEMRLPSIRKSLVICAHGL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTATGCTCTTGTGCTGACTGCTGGTGACCAAAATTTACTTCATTCATGTGGTGGATTGACATTTCTTCGAGTAGAGGGCAAAGAACTTGAAAATTTCAAGGTCAA
CCCTGCGGTTGAGACTGGATATGAAAATTTAGCGTTGGTGAGGTTGCTATTTGAGATGAGATTACCTTCAATTAGGAAGTCTTTGGTGATATGTGCCCACGGGCTACAAC
TCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCTATGCTCTTGTGCTGACTGCTGGTGACCAAAATTTACTTCATTCATGTGGTGGATTGACATTTCTTCGAGTAGAGGGCAAAGAACTTGAAAATTTCAAGGTCAA
CCCTGCGGTTGAGACTGGATATGAAAATTTAGCGTTGGTGAGGTTGCTATTTGAGATGAGATTACCTTCAATTAGGAAGTCTTTGGTGATATGTGCCCACGGGCTACAAC
TCTAG
Protein sequenceShow/hide protein sequence
MGYALVLTAGDQNLLHSCGGLTFLRVEGKELENFKVNPAVETGYENLALVRLLFEMRLPSIRKSLVICAHGLQL