; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0025855 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025855
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr10:22178221..22178643
RNA-Seq ExpressionLag0025855
SyntenyLag0025855
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]2.0e-3656.3Show/hide
Query:  TQIQLRSPSQLGTIFHPVFQEQQSGIVYAPINANNFELKTSLIQMARDCAFRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRL
        T++    P  +   F P     Q GI+  PIN NNFELK  LIQMAR+ AFRG   EDP+ H++SFL++CGT+K+NGV+ D I+L LFPFSLQD+AKD L
Subjt:  TQIQLRSPSQLGTIFHPVFQEQQSGIVYAPINANNFELKTSLIQMARDCAFRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRL

Query:  SSIPLKSITTWDALVQAFLKKFFRPAKTIKLRTKI
         +IP  SITTW+ L QAFL K+F PAK+ +LRT+I
Subjt:  SSIPLKSITTWDALVQAFLKKFFRPAKTIKLRTKI

XP_023874613.1 uncharacterized protein LOC111987139 [Quercus suber]1.0e-2952.27Show/hide
Query:  QLRSPSQLGTIFHPVFQEQQSGIVYAPINANNFELKTSLIQMARDCAFRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRLSSI
        Q   P  L     P+  +  SGI    INANNFELK +LI M +   F GSP +DPN H+  FL++C TIK+NGVTED IRL LFPFSL+DKA+  L S+
Subjt:  QLRSPSQLGTIFHPVFQEQQSGIVYAPINANNFELKTSLIQMARDCAFRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRLSSI

Query:  PLKSITTWDALVQAFLKKFFRPAKTIKLRTKI
           SIT+W  + + FL KFF PAKT +LR++I
Subjt:  PLKSITTWDALVQAFLKKFFRPAKTIKLRTKI

XP_023903214.1 uncharacterized protein LOC112015077 [Quercus suber]1.4e-2951.52Show/hide
Query:  QLRSPSQLGTIFHPVFQEQQSGIVYAPINANNFELKTSLIQMARDCAFRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRLSSI
        Q   P  L     P+  +  SGI    INANNFELK +LI M +   F GSP +DPN H+  FL++C T+K+NGVTED IRL LFPFSL+DKA+  L S+
Subjt:  QLRSPSQLGTIFHPVFQEQQSGIVYAPINANNFELKTSLIQMARDCAFRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRLSSI

Query:  PLKSITTWDALVQAFLKKFFRPAKTIKLRTKI
           SIT+W  + + FL KFF PAKT +LR++I
Subjt:  PLKSITTWDALVQAFLKKFFRPAKTIKLRTKI

XP_027123961.1 uncharacterized protein LOC113740608 [Coffea arabica]4.7e-3057.98Show/hide
Query:  PVFQEQQSGIVYAPINANNFELKTSLIQMARDCAFRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRLSSIPLKSITTWDALVQ
        P  Q  Q+ IV   +NANNFE+K SLIQM +   + G+ TEDPNSH+ +FL++C TIK NGV+ED I+L LFPFSL+DKAK  L S P  + TTWD L +
Subjt:  PVFQEQQSGIVYAPINANNFELKTSLIQMARDCAFRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRLSSIPLKSITTWDALVQ

Query:  AFLKKFFRPAKTIKLRTKI
        AFL KFF P KT KLR  I
Subjt:  AFLKKFFRPAKTIKLRTKI

XP_030970157.1 uncharacterized protein LOC115990464 [Quercus lobata]2.1e-3053.79Show/hide
Query:  QLRSPSQLGTIFHPVFQEQQSGIVYAPINANNFELKTSLIQMARDCAFRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRLSSI
        Q   P  L     PV  E  SGI    INANNFELK +LI M     F GSP  DPN H+  FL++C T+K+NGVTED IRL LFPFSL+DKA+  L S+
Subjt:  QLRSPSQLGTIFHPVFQEQQSGIVYAPINANNFELKTSLIQMARDCAFRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRLSSI

Query:  PLKSITTWDALVQAFLKKFFRPAKTIKLRTKI
         L SIT+W  + + FL KFF PAKT +LR++I
Subjt:  PLKSITTWDALVQAFLKKFFRPAKTIKLRTKI

TrEMBL top hitse value%identityAlignment
A0A2I4F4C8 uncharacterized protein LOC1089953732.8e-2852.34Show/hide
Query:  PSQLGTIFHPVFQEQQSGIVYAPINANNFELKTSLIQMARDCAFRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRLSSIPLKS
        P  L     PV  +  SGI    INANNFELK +LI M +   F  SP +DPN H+  FL +C T+K+NGVT D IRL LFPFSL+DKA+  L S+ L S
Subjt:  PSQLGTIFHPVFQEQQSGIVYAPINANNFELKTSLIQMARDCAFRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRLSSIPLKS

Query:  ITTWDALVQAFLKKFFRPAKTIKLRTKI
        IT+W  + + FL KFF PAKT +LR++I
Subjt:  ITTWDALVQAFLKKFFRPAKTIKLRTKI

A0A6J0ZX64 LOW QUALITY PROTEIN: uncharacterized protein LOC1104129454.7e-2855.83Show/hide
Query:  PVFQEQQSGIVYAPINANNFELKTSLIQMARDCA-FRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRLSSIPLKSITTWDALV
        P+ Q     I    INANNFE+K + IQM +    F G P++DPNSH+ +FL++C T K NGVT+D IRL LFPFSL+DKAK  L+S+P  SITTW+ L 
Subjt:  PVFQEQQSGIVYAPINANNFELKTSLIQMARDCA-FRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRLSSIPLKSITTWDALV

Query:  QAFLKKFFRPAKTIKLRTKI
        Q FL KFF PAKT K+R  I
Subjt:  QAFLKKFFRPAKTIKLRTKI

A0A6J0ZYV0 uncharacterized protein LOC1104134134.7e-2855.83Show/hide
Query:  PVFQEQQSGIVYAPINANNFELKTSLIQMARDCA-FRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRLSSIPLKSITTWDALV
        P+ Q     I    INANNFE+K + IQM +    F G P++DPNSH+ +FL++C T K NGVT+D IRL LFPFSL+DKAK  L+S+P  SITTW+ L 
Subjt:  PVFQEQQSGIVYAPINANNFELKTSLIQMARDCA-FRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRLSSIPLKSITTWDALV

Query:  QAFLKKFFRPAKTIKLRTKI
        Q FL KFF PAKT K+R  I
Subjt:  QAFLKKFFRPAKTIKLRTKI

A0A6P6W382 uncharacterized protein LOC1137297693.6e-2854.62Show/hide
Query:  PVFQEQQSGIVYAPINANNFELKTSLIQMARDCAFRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRLSSIPLKSITTWDALVQ
        P  Q  Q+ I    +NANNFE+K SLIQM +   + G+ TEDPNSH+ +FL++C TIK NGV++D I+L LFPFSL+DKAK  L S P  + TTW  L +
Subjt:  PVFQEQQSGIVYAPINANNFELKTSLIQMARDCAFRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRLSSIPLKSITTWDALVQ

Query:  AFLKKFFRPAKTIKLRTKI
        AFL KFF P KT +LR  I
Subjt:  AFLKKFFRPAKTIKLRTKI

A0A6P6XAQ1 Reverse transcriptase2.3e-3057.98Show/hide
Query:  PVFQEQQSGIVYAPINANNFELKTSLIQMARDCAFRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRLSSIPLKSITTWDALVQ
        P  Q  Q+ IV   +NANNFE+K SLIQM +   + G+ TEDPNSH+ +FL++C TIK NGV+ED I+L LFPFSL+DKAK  L S P  + TTWD L +
Subjt:  PVFQEQQSGIVYAPINANNFELKTSLIQMARDCAFRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRLSSIPLKSITTWDALVQ

Query:  AFLKKFFRPAKTIKLRTKI
        AFL KFF P KT KLR  I
Subjt:  AFLKKFFRPAKTIKLRTKI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCAAATGGCCAACCCAAATTCAGTTGAGGAGCCCAAGCCAATTAGGGACTATTTTCCATCCCGTATTTCAGGAGCAGCAGTCAGGGATTGTCTATGCCCCGATAAA
TGCTAATAATTTTGAGTTGAAGACCAGTCTCATACAGATGGCTCGAGACTGTGCATTCCGAGGATCGCCCACTGAGGACCCTAATTCTCATATGAAATCCTTTCTAGATG
TTTGTGGGACAATAAAGTTAAATGGAGTCACTGAAGATGTCATACGCTTATGTTTATTTCCATTTTCTTTGCAGGATAAAGCGAAGGATCGGTTATCGTCTATACCACTT
AAGAGCATTACCACCTGGGATGCTTTGGTCCAGGCGTTTCTGAAGAAATTCTTCCGTCCTGCAAAGACGATCAAACTGAGGACCAAAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCAAATGGCCAACCCAAATTCAGTTGAGGAGCCCAAGCCAATTAGGGACTATTTTCCATCCCGTATTTCAGGAGCAGCAGTCAGGGATTGTCTATGCCCCGATAAA
TGCTAATAATTTTGAGTTGAAGACCAGTCTCATACAGATGGCTCGAGACTGTGCATTCCGAGGATCGCCCACTGAGGACCCTAATTCTCATATGAAATCCTTTCTAGATG
TTTGTGGGACAATAAAGTTAAATGGAGTCACTGAAGATGTCATACGCTTATGTTTATTTCCATTTTCTTTGCAGGATAAAGCGAAGGATCGGTTATCGTCTATACCACTT
AAGAGCATTACCACCTGGGATGCTTTGGTCCAGGCGTTTCTGAAGAAATTCTTCCGTCCTGCAAAGACGATCAAACTGAGGACCAAAATTTAG
Protein sequenceShow/hide protein sequence
MSKWPTQIQLRSPSQLGTIFHPVFQEQQSGIVYAPINANNFELKTSLIQMARDCAFRGSPTEDPNSHMKSFLDVCGTIKLNGVTEDVIRLCLFPFSLQDKAKDRLSSIPL
KSITTWDALVQAFLKKFFRPAKTIKLRTKI