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Lag0025858 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025858
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr10:22206844..22207410
RNA-Seq ExpressionLag0025858
SyntenyLag0025858
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058889.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]9.0e-6968.62Show/hide
Query:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK
        MKVDLP+F+GRMDVEKFLDWIK VE+FF+YAN  E KKV+LVA KLQ GASAWWDQLQNNRR +GKQP++ W KMLRL+KK FLPINY+Q+LYNQYQ C 
Subjt:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK

Query:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEENEEEKQIKTYQRRSNWAKQEQQP
        QG RS++DYTE+F+RLGAR+NLPETE Q+ SR ++ L ++IK+VVNLH L +L D IS+A+KIE+NEE K+ K  QR++NW KQ   P
Subjt:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEENEEEKQIKTYQRRSNWAKQEQQP
XP_022138327.1 uncharacterized protein LOC111009540 isoform X1 [Momordica charantia]4.8e-5457.92Show/hide
Query:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK
        MK+DLP+F+G+MDVE FLD +K VE+FF+Y NTPEDKKVKLVAFK+QSGASAWWDQL+ N R  GKQPI+ W +MLRL+++ FLP N+EQ+LY  YQ C+
Subjt:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK

Query:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEENEEEKQIKTYQRRSNWAK
        QG +++ DYTE FHRLGA+ N+ ETE  K +RFV+ L +DI++ +++  +  LTD I +ATKI   E++K+++T  RR+ W K
Subjt:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEENEEEKQIKTYQRRSNWAK
XP_022138328.1 uncharacterized protein LOC111009540 isoform X2 [Momordica charantia]4.8e-5457.92Show/hide
Query:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK
        MK+DLP+F+G+MDVE FLD +K VE+FF+Y NTPEDKKVKLVAFK+QSGASAWWDQL+ N R  GKQPI+ W +MLRL+++ FLP N+EQ+LY  YQ C+
Subjt:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK

Query:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEENEEEKQIKTYQRRSNWAK
        QG +++ DYTE FHRLGA+ N+ ETE  K +RFV+ L +DI++ +++  +  LTD I +ATKI   E++K+++T  RR+ W K
Subjt:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEENEEEKQIKTYQRRSNWAK
XP_031741035.1 uncharacterized protein LOC116403692 [Cucumis sativus]5.1e-4855.8Show/hide
Query:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK
        MK+DLP + G+ ++E FLDWIK  E+FF Y +TPE KKV LVA KL++GASAWWDQL+ NR+  GKQP++ W KM +L+K  FLP NYEQ LYNQYQ C+
Subjt:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK

Query:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEENEEEKQIKTYQRRSNW
        QG RSV +Y E+FHRL AR NL E EQ + +RFV  L  DIKE V L    +L++ IS A  +EE    +  K   RRS W
Subjt:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEENEEEKQIKTYQRRSNW
XP_031745523.1 uncharacterized protein LOC116405899 [Cucumis sativus]5.5e-5056.91Show/hide
Query:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK
        MKVDLPS+SG+ D+E FLDW+K  E+FF Y +TPE KKV+LVA KL+ GASAWW+QL+ NR+   K+P++ W KM +L+K  FLP NYEQ LYNQYQ C+
Subjt:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK

Query:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEENEEEKQIKTYQRRSNW
        QG R+V +Y E+FHRL AR NL E EQ + +RFV  L  DIKE V L  L +L++ ISLA  +EE    K  KT  RR+ W
Subjt:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEENEEEKQIKTYQRRSNW
TrEMBL top hitse value%identityAlignment
A0A5A7U7S6 E3 ubiquitin-protein ligase SHPRH isoform X44.0e-4652.81Show/hide
Query:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK
        MK+DLP+++G+ D + FLDW+K  E+FF Y +TP+ KKV LV  KL+ GASAWWDQL+ NR+ YGK PI+ W KM +L+K  FLP NYEQ LYNQYQ C+
Subjt:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK

Query:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEEN---EEEKQIKTY
        QG RSV +Y E+FHRL  R NL E E  + +RF+  L  DIKE V L    +L++ ISLA  ++E    ++E + K Y
Subjt:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEEN---EEEKQIKTY
A0A5B7BER3 Uncharacterized protein2.7e-4751.15Show/hide
Query:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK
        MK+DLPSF+G + +E FLDWI +VE+FF+     +DK+VKLVA+KL+ GASAWWDQ+Q NRR  GKQP++ W KM RL+++ FLP++YEQ+LY QYQ C+
Subjt:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK

Query:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEENEEEKQIKT
        QGGRSV +Y+++F+ L +RNNL ETE Q+ +R+V  L   I++ +NL ++  L +  SLA K+E  +  + +++
Subjt:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEENEEEKQIKT
A0A5D3DJC1 Transposon Ty3-G Gag-Pol polyprotein4.3e-6968.62Show/hide
Query:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK
        MKVDLP+F+GRMDVEKFLDWIK VE+FF+YAN  E KKV+LVA KLQ GASAWWDQLQNNRR +GKQP++ W KMLRL+KK FLPINY+Q+LYNQYQ C 
Subjt:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK

Query:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEENEEEKQIKTYQRRSNWAKQEQQP
        QG RS++DYTE+F+RLGAR+NLPETE Q+ SR ++ L ++IK+VVNLH L +L D IS+A+KIE+NEE K+ K  QR++NW KQ   P
Subjt:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEENEEEKQIKTYQRRSNWAKQEQQP
A0A6J1CAS9 uncharacterized protein LOC111009540 isoform X12.3e-5457.92Show/hide
Query:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK
        MK+DLP+F+G+MDVE FLD +K VE+FF+Y NTPEDKKVKLVAFK+QSGASAWWDQL+ N R  GKQPI+ W +MLRL+++ FLP N+EQ+LY  YQ C+
Subjt:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK

Query:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEENEEEKQIKTYQRRSNWAK
        QG +++ DYTE FHRLGA+ N+ ETE  K +RFV+ L +DI++ +++  +  LTD I +ATKI   E++K+++T  RR+ W K
Subjt:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEENEEEKQIKTYQRRSNWAK
A0A6J1CCQ8 uncharacterized protein LOC111009540 isoform X22.3e-5457.92Show/hide
Query:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK
        MK+DLP+F+G+MDVE FLD +K VE+FF+Y NTPEDKKVKLVAFK+QSGASAWWDQL+ N R  GKQPI+ W +MLRL+++ FLP N+EQ+LY  YQ C+
Subjt:  MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCK

Query:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEENEEEKQIKTYQRRSNWAK
        QG +++ DYTE FHRLGA+ N+ ETE  K +RFV+ L +DI++ +++  +  LTD I +ATKI   E++K+++T  RR+ W K
Subjt:  QGGRSVLDYTEDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEENEEEKQIKTYQRRSNWAK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G15180.1 Zinc knuckle (CCHC-type) family protein8.8e-0630.51Show/hide
Query:  FLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKM
        +L W   +  +FE+ +T ++ K+ +   +L+  A  WWDQ + NR Y  + PI+ W ++
Subjt:  FLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTGGATCTTCCTAGCTTTAGTGGGAGGATGGACGTCGAAAAATTCTTGGATTGGATCAAGAAAGTTGAGAGTTTTTTTGAGTATGCTAATACACCCGAAGACAA
AAAGGTCAAATTGGTTGCATTCAAGTTGCAAAGTGGTGCATCGGCATGGTGGGATCAACTTCAAAATAATCGGCGGTACTATGGGAAGCAACCCATTAAAAAATGGCATA
AGATGCTACGCCTAATAAAGAAATGTTTTCTGCCAATCAACTATGAACAAATCTTGTACAATCAATATCAACTATGTAAACAAGGTGGTCGATCGGTTCTTGATTACACT
GAAGATTTTCACCGATTGGGGGCTAGAAACAACCTACCTGAGACCGAACAACAAAAAAATTCAAGATTTGTGAATGACCTTCATGATGATATCAAAGAGGTAGTCAATCT
ACATTCGCTAGCTTATCTTACTGATGTCATCTCTCTTGCAACAAAGATTGAGGAAAATGAAGAAGAGAAACAAATCAAGACATACCAAAGGAGAAGCAATTGGGCTAAAC
AAGAACAACAACCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGTGGATCTTCCTAGCTTTAGTGGGAGGATGGACGTCGAAAAATTCTTGGATTGGATCAAGAAAGTTGAGAGTTTTTTTGAGTATGCTAATACACCCGAAGACAA
AAAGGTCAAATTGGTTGCATTCAAGTTGCAAAGTGGTGCATCGGCATGGTGGGATCAACTTCAAAATAATCGGCGGTACTATGGGAAGCAACCCATTAAAAAATGGCATA
AGATGCTACGCCTAATAAAGAAATGTTTTCTGCCAATCAACTATGAACAAATCTTGTACAATCAATATCAACTATGTAAACAAGGTGGTCGATCGGTTCTTGATTACACT
GAAGATTTTCACCGATTGGGGGCTAGAAACAACCTACCTGAGACCGAACAACAAAAAAATTCAAGATTTGTGAATGACCTTCATGATGATATCAAAGAGGTAGTCAATCT
ACATTCGCTAGCTTATCTTACTGATGTCATCTCTCTTGCAACAAAGATTGAGGAAAATGAAGAAGAGAAACAAATCAAGACATACCAAAGGAGAAGCAATTGGGCTAAAC
AAGAACAACAACCTTAA
Protein sequenceShow/hide protein sequence
MKVDLPSFSGRMDVEKFLDWIKKVESFFEYANTPEDKKVKLVAFKLQSGASAWWDQLQNNRRYYGKQPIKKWHKMLRLIKKCFLPINYEQILYNQYQLCKQGGRSVLDYT
EDFHRLGARNNLPETEQQKNSRFVNDLHDDIKEVVNLHSLAYLTDVISLATKIEENEEEKQIKTYQRRSNWAKQEQQP