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Lag0025879 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025879
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr10:22803001..22805717
RNA-Seq ExpressionLag0025879
SyntenyLag0025879
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021732105.1 uncharacterized protein LOC110698909 [Chenopodium quinoa]1.5e-2032.16Show/hide
Query:  LASFRGVLDDCNLKDFEYRGDKFTWSNRQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDVTPSMGSGGNQNKKQFFFRFEEVWAQQ
        L +FR  L DC L+D  YRG  +TW      S ++ ERLDRFL +  + S+F  + V HL     DH PILL    +  S   + +K   F+FE  W  +
Subjt:  LASFRGVLDDCNLKDFEYRGDKFTWSNRQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDVTPSMGSGGNQNKKQFFFRFEEVWAQQ

Query:  PDCRNIIDG-----------------------------------------------------EGCWK--DIQVKVIVNM--------NAKLLAPLTRGEI
          C   I+G                                                     E C +  +I+ KVI  +        N  LL P +R E+
Subjt:  PDCRNIIDG-----------------------------------------------------EGCWK--DIQVKVIVNM--------NAKLLAPLTRGEI

Query:  ERAIKQMHPSKAPGLDGFPAIFYQRFW
          A+K MHPSKAPG DG  AIFYQRFW
Subjt:  ERAIKQMHPSKAPGLDGFPAIFYQRFW

XP_024195790.1 uncharacterized protein LOC112198938 [Rosa chinensis]3.0e-2132.87Show/hide
Query:  GIPTR-ESILASFRGVLDDCNLKDFEYRGDKFTWSNRQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDVTPSMGSGGNQNKKQFFF
        G P R E  +  FR  L+   LKD  + G +FTW   +   ++I  RLDRF+ N ++  +F    V HL     DH PIL+ V         + KK   F
Subjt:  GIPTR-ESILASFRGVLDDCNLKDFEYRGDKFTWSNRQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDVTPSMGSGGNQNKKQFFF

Query:  RFEEVWAQQPDCRNIID-------------------GEGCWKDIQVKVIVNMNAKLLAPLTRGEIERAIKQMHPSKAPGLDGFPAIFYQRFW-------F
        RFE+ W ++ DCR++++                   GEG    +   +    N +L + +   E+ +A+KQMHPSKAPG DGF   FYQ+FW        
Subjt:  RFEEVWAQQPDCRNIID-------------------GEGCWKDIQVKVIVNMNAKLLAPLTRGEIERAIKQMHPSKAPGLDGFPAIFYQRFW-------F

Query:  EALSSMINGAMARKQM
        EA+   +N     KQ+
Subjt:  EALSSMINGAMARKQM

XP_039834390.1 uncharacterized protein LOC120695147 [Panicum virgatum]9.7e-2030.81Show/hide
Query:  NASHVPGIPTRESILASFRGVLDDCNLKDFEYRGDKFTWSN-RQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDVTPSMGSGGN-Q
        N     G P  E     FR  L++C+L D  + GD FTW N    A+  + ERLDR + N A+ + F  + V + +    DHRPI+  V P +    + +
Subjt:  NASHVPGIPTRESILASFRGVLDDCNLKDFEYRGDKFTWSN-RQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDVTPSMGSGGN-Q

Query:  NKKQFFFRFEEVWAQQPDCRNIIDGEGCWKD------------IQVKVIVNMNAKLLAPLTRGEIERAIKQMHPSKAPGLDGFPAIFYQRFWF-------
           +F  +FE  W ++ +C   +  +  W++            +Q K+  +MN  L AP +  E+  A+K M   KAPG DG P +FY++FW        
Subjt:  NKKQFFFRFEEVWAQQPDCRNIIDGEGCWKD------------IQVKVIVNMNAKLLAPLTRGEIERAIKQMHPSKAPGLDGFPAIFYQRFWF-------

Query:  EALSSMINGAM
        E + +++NGA+
Subjt:  EALSSMINGAM

XP_042950087.1 uncharacterized protein LOC122282202 [Carya illinoinensis]1.3e-1925.78Show/hide
Query:  LASFRGVLDDCNLKDFEYRGDKFTWSNRQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDVTPSMGSGGNQNKKQFFFRFEEVWAQQ
        +  FR VL DC+L+D  Y G  FTWSNR+   D + ERLDRFL N  +  +F NL VTH   A  DH P+ LD   ++     + + +  FRFE +W  +
Subjt:  LASFRGVLDDCNLKDFEYRGDKFTWSNRQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDVTPSMGSGGNQNKKQFFFRFEEVWAQQ

Query:  PDCRNIID-----------------------------------------------------------------------------GEGCWKD--------
         +C +II+                                                                              E  WK         
Subjt:  PDCRNIID-----------------------------------------------------------------------------GEGCWKD--------

Query:  -------------------------IQVKVIVNMNAKLLAPLTRGEIERAIKQMHPSKAPGLDGFPAIFYQRFWFEALSSMINGAMA
                                 ++ +V   MN +LL P    E+E A+KQMHPS+APG DG P +F+Q++W    +S+ N  ++
Subjt:  -------------------------IQVKVIVNMNAKLLAPLTRGEIERAIKQMHPSKAPGLDGFPAIFYQRFWFEALSSMINGAMA

XP_042962601.1 uncharacterized protein LOC122296871 [Carya illinoinensis]1.3e-1935.36Show/hide
Query:  LASFRGVLDDCNLKDFEYRGDKFTWSNRQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDVTPSMGSGGNQNKKQFFFRFEEVWAQQ
        +A F+  L+  NL D    G+ F WSNR      I ERLDRFLVN     +F ++ V  L   + DH+ +LL V   + S    NK  + F+FE  W ++
Subjt:  LASFRGVLDDCNLKDFEYRGDKFTWSNRQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDVTPSMGSGGNQNKKQFFFRFEEVWAQQ

Query:  PDCRNIIDGEGCWKD-IQVKVIVNMNAKLLAPLTRGEIERAIKQMHPSKAPGLDGFPAIFYQRFW------FEALSSMING
         +C+ +++    +   + ++V   MN  L  P TR E+E A++QM P K+ G DG+ A FYQ  W       EA    +NG
Subjt:  PDCRNIIDGEGCWKD-IQVKVIVNMNAKLLAPLTRGEIERAIKQMHPSKAPGLDGFPAIFYQRFW------FEALSSMING

TrEMBL top hitse value%identityAlignment
A0A2N9FMB2 CCHC-type domain-containing protein5.6e-2133.33Show/hide
Query:  LASFRGVLDDCNLKDFEYRGDKFTWSNRQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDVTPSMGSGGNQNKKQFFFRFEEVWAQQ
        +A FR  L DC L+D  + G +FTWSNR++ S  +  RLDR + N  ++ +F ++ V+HL   + DH  +L++++P      N  ++Q  FRFE  W ++
Subjt:  LASFRGVLDDCNLKDFEYRGDKFTWSNRQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDVTPSMGSGGNQNKKQFFFRFEEVWAQQ

Query:  PDCRNIIDGEGCWKDIQ----------------VKVIV---------NMNAKLLAPLTRGEIERAIKQMHPSKAPGLDGFPAI
          C   I+    W+ +Q                V+ +V         +MN  LL P ++ E++ A  QMHPSKAPG DG+  I
Subjt:  PDCRNIIDGEGCWKDIQ----------------VKVIV---------NMNAKLLAPLTRGEIERAIKQMHPSKAPGLDGFPAI

A0A2N9GDA6 Uncharacterized protein2.7e-2335.59Show/hide
Query:  LASFRGVLDDCNLKDFEYRGDKFTWSNRQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDVTPSMGSGGNQNKKQFFFRFEEVWAQQ
        + SFR  L DC L D  ++G+KFTW N +  +D + ERLDR      + +LF N  + H+ ++  DH  ++L++  S+       K+   FRFE VW Q 
Subjt:  LASFRGVLDDCNLKDFEYRGDKFTWSNRQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDVTPSMGSGGNQNKKQFFFRFEEVWAQQ

Query:  PDCRNIIDGEGCW-------------KDIQVKVIVNMNAKLLAPLTRGEIERAIKQMHPSKAPGLDGFPAIFYQRFW
          C  +I  +  W             + ++ KV   MN  L    T  EI  A+ QMHP+KAPG DG   +FYQ+FW
Subjt:  PDCRNIIDGEGCW-------------KDIQVKVIVNMNAKLLAPLTRGEIERAIKQMHPSKAPGLDGFPAIFYQRFW

A0A803PPS5 Uncharacterized protein2.3e-2235.29Show/hide
Query:  GIPTRESILASFRGVLDDCNLKDFEYRGDKFTWSNRQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDVTPSMGSGGNQNKKQFFFR
        G P    ++ +FR  L+DC L++ ++ G K+TW N +  ++ I ERLDR   NE ++ LF    VTHL+    DH P+LL    S      +NK    F 
Subjt:  GIPTRESILASFRGVLDDCNLKDFEYRGDKFTWSNRQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDVTPSMGSGGNQNKKQFFFR

Query:  FEEVWAQQPDCRNII-DGEGC--------------WKDIQVKVIVNMNAKLLAPLTRGEIERAIKQMHPSKAPGLDGFPAIFYQRFW
        FE  WA   DC  II D  G                + I  K+  + N  LL P T  +I  A++ +HP KAPG DG   +FY+ +W
Subjt:  FEEVWAQQPDCRNII-DGEGC--------------WKDIQVKVIVNMNAKLLAPLTRGEIERAIKQMHPSKAPGLDGFPAIFYQRFW

A0A803QG02 Uncharacterized protein5.6e-2133.33Show/hide
Query:  RESILASFRGVLDDCNLKDFEYRGDKFTWSNRQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDVT-PSMGSGGNQNKKQFFFRFEE
        RE ++  FR  +DDCN+   ++ GDKFTW+N+      + ERLDR   N  +  +F    + HL++ + DHR I  +V+ P+      +N+  F   F  
Subjt:  RESILASFRGVLDDCNLKDFEYRGDKFTWSNRQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDVT-PSMGSGGNQNKKQFFFRFEE

Query:  VWAQQP--DCRNIIDGEGCWKDIQVKVIVNMNAKLLAPLTRGEIERAIKQMHPSKAPGLDGFPAIFYQRFW
        V +     D  NII      + I   +  +MN  LL   T  +++ A+K M P K+PG+DG  A+F+Q+ W
Subjt:  VWAQQP--DCRNIIDGEGCWKDIQVKVIVNMNAKLLAPLTRGEIERAIKQMHPSKAPGLDGFPAIFYQRFW

A0A803QJV0 Uncharacterized protein2.7e-2333.03Show/hide
Query:  SHVPGIPTRE-SILASFRGVLDDCNLKDFEYRGDKFTWSNRQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDV-TPSMGSGGNQNK
        SH+     RE + + +F+  LD C L DF     +FTW N    S Q+ ERLDR L N  +   F    +  L+W   DHR +++D+     G  G + K
Subjt:  SHVPGIPTRE-SILASFRGVLDDCNLKDFEYRGDKFTWSNRQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDV-TPSMGSGGNQNK

Query:  KQFFFRFEEVWAQQPDCRNIIDGEGCWKD-------------------------------------------IQVKVIVNMNAKLLAPLTRGEIERAIKQ
        +   F FEEVW    +C+ II+ +  W+D                                           +Q KV + MN  LL P    E+ +AIK+
Subjt:  KQFFFRFEEVWAQQPDCRNIIDGEGCWKD-------------------------------------------IQVKVIVNMNAKLLAPLTRGEIERAIKQ

Query:  MHPSKAPGLDGFPAIFYQRFW
        MHP+KAPG DG PA+FYQ FW
Subjt:  MHPSKAPGLDGFPAIFYQRFW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGAGTCGAGTCCCAGAAATTGGCATAACGCTAGCCACGTACCAGGTATTCCTACAAGAGAATCTATATTAGCGAGTTTTAGAGGTGTTTTGGATGATTGCAATCT
AAAGGATTTTGAGTACAGAGGGGACAAGTTTACATGGTCTAACAGACAAATAGCTTCAGATCAAATTAATGAACGGCTAGATCGCTTCCTTGTGAATGAAGCTTTTTGGA
GCTTATTTTCTAATTTGCCAGTTACTCACCTGGAATGGGCAACATTTGACCATCGCCCAATTTTACTTGATGTGACCCCTTCAATGGGGTCAGGAGGAAATCAAAACAAA
AAACAATTTTTTTTTAGATTTGAAGAAGTTTGGGCCCAACAACCAGATTGCAGAAATATAATCGATGGTGAAGGTTGTTGGAAGGATATCCAGGTGAAGGTCATTGTGAA
CATGAATGCTAAACTTTTAGCACCCCTTACTCGAGGTGAAATTGAAAGAGCAATAAAGCAAATGCATCCGTCAAAGGCACCTGGTCTAGATGGTTTTCCTGCAATCTTCT
ATCAGAGGTTTTGGTTTGAGGCTCTATCTTCGATGATAAATGGGGCTATGGCTCGAAAACAAATGATGGGTATCAAGGCAAGCAAACATTGCCCTGAGATTCAACAAGGA
AAATACATTGGAAGAAATGAGACACTTTGTGTCGTCCGAAAGAGCTTGGTGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGAGTCGAGTCCCAGAAATTGGCATAACGCTAGCCACGTACCAGGTATTCCTACAAGAGAATCTATATTAGCGAGTTTTAGAGGTGTTTTGGATGATTGCAATCT
AAAGGATTTTGAGTACAGAGGGGACAAGTTTACATGGTCTAACAGACAAATAGCTTCAGATCAAATTAATGAACGGCTAGATCGCTTCCTTGTGAATGAAGCTTTTTGGA
GCTTATTTTCTAATTTGCCAGTTACTCACCTGGAATGGGCAACATTTGACCATCGCCCAATTTTACTTGATGTGACCCCTTCAATGGGGTCAGGAGGAAATCAAAACAAA
AAACAATTTTTTTTTAGATTTGAAGAAGTTTGGGCCCAACAACCAGATTGCAGAAATATAATCGATGGTGAAGGTTGTTGGAAGGATATCCAGGTGAAGGTCATTGTGAA
CATGAATGCTAAACTTTTAGCACCCCTTACTCGAGGTGAAATTGAAAGAGCAATAAAGCAAATGCATCCGTCAAAGGCACCTGGTCTAGATGGTTTTCCTGCAATCTTCT
ATCAGAGGTTTTGGTTTGAGGCTCTATCTTCGATGATAAATGGGGCTATGGCTCGAAAACAAATGATGGGTATCAAGGCAAGCAAACATTGCCCTGAGATTCAACAAGGA
AAATACATTGGAAGAAATGAGACACTTTGTGTCGTCCGAAAGAGCTTGGTGGCTTGA
Protein sequenceShow/hide protein sequence
MSESSPRNWHNASHVPGIPTRESILASFRGVLDDCNLKDFEYRGDKFTWSNRQIASDQINERLDRFLVNEAFWSLFSNLPVTHLEWATFDHRPILLDVTPSMGSGGNQNK
KQFFFRFEEVWAQQPDCRNIIDGEGCWKDIQVKVIVNMNAKLLAPLTRGEIERAIKQMHPSKAPGLDGFPAIFYQRFWFEALSSMINGAMARKQMMGIKASKHCPEIQQG
KYIGRNETLCVVRKSLVA