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Lag0025880 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025880
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr10:22855342..22855701
RNA-Seq ExpressionLag0025880
SyntenyLag0025880
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]7.2e-1262.5Show/hide
Query:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAPPSNDQGNYEFPAGDVWT
        MSSSIIALLK ++LTGEN+ TWKS LN IL++ DLRFVL EECPP P  N   + +  A D WT
Subjt:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAPPSNDQGNYEFPAGDVWT
TYK11933.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-1274Show/hide
Query:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAPPSN
        M+SSI+ LL +EKL G+N+  WKSNLNTIL+VEDLRFVLTEECPP P SN
Subjt:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAPPSN
TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]7.2e-1262.5Show/hide
Query:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAPPSNDQGNYEFPAGDVWT
        MSSSIIALLK ++LTGEN+ TWKS LN IL++ DLRFVL EECPP P  N   + +  A D WT
Subjt:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAPPSNDQGNYEFPAGDVWT
XP_038882358.1 uncharacterized protein LOC120073622 [Benincasa hispida]7.2e-1274Show/hide
Query:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAPPSN
        M+SSII LL +EKL G+N+  WKSNLNTIL+V+DLRFVLTEECP AP SN
Subjt:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAPPSN
XP_038904195.1 uncharacterized protein LOC120090541 [Benincasa hispida]1.9e-1260.94Show/hide
Query:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAP-PSNDQGNYEFPAGDVW
        MS+SII LL +EKL G+N+ TWKSN+NTIL+++DLRFVLTEECPP+P P  ++  Y+  A D+W
Subjt:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAP-PSNDQGNYEFPAGDVW
TrEMBL top hitse value%identityAlignment
A0A5A7VA67 Gag/pol protein3.5e-1262.5Show/hide
Query:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAPPSNDQGNYEFPAGDVWT
        MSSSIIALLK ++LTGEN+ TWKS LN IL++ DLRFVL EECPP P  N   + +  A D WT
Subjt:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAPPSNDQGNYEFPAGDVWT
A0A5A7VAN8 Gag/pol protein1.0e-1160.94Show/hide
Query:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAPPSNDQGNYEFPAGDVWT
        MSSSIIALLK ++LTGEN+  WKS LN IL++ DLRFVL EECPP P  N   +    A D WT
Subjt:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAPPSNDQGNYEFPAGDVWT
A0A5D3CJ27 Gag/pol protein7.0e-1374Show/hide
Query:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAPPSN
        M+SSI+ LL +EKL G+N+  WKSNLNTIL+VEDLRFVLTEECPP P SN
Subjt:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAPPSN
A0A5D3D0D9 Gag/pol protein3.5e-1262.5Show/hide
Query:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAPPSNDQGNYEFPAGDVWT
        MSSSIIALLK ++LTGEN+ TWKS LN IL++ DLRFVL EECPP P  N   + +  A D WT
Subjt:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAPPSNDQGNYEFPAGDVWT
A0A5D3DL59 Gag/pol protein1.0e-1170Show/hide
Query:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAPPSN
        M+SSI+ LL +EKL G+N+  WKSNLNTIL+V+DLRFVLTEECP  P SN
Subjt:  MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAPPSN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCCTCCATTATCGCTTTGCTTAAAAATGAAAAGTTAACTGGCGAGAATTTCCCAACGTGGAAATCAAATTTGAATACGATTCTAATGGTCGAGGATCTCCGGTT
TGTCTTGACAGAGGAGTGTCCTCCTGCACCCCCCTCAAACGACCAGGGAAATTATGAATTCCCTGCAGGAGATGTTTGGACTCCCGTCCTATCAACTCCTCCACGAAGCC
TTGAAGAATCTCTTGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCCTCCATTATCGCTTTGCTTAAAAATGAAAAGTTAACTGGCGAGAATTTCCCAACGTGGAAATCAAATTTGAATACGATTCTAATGGTCGAGGATCTCCGGTT
TGTCTTGACAGAGGAGTGTCCTCCTGCACCCCCCTCAAACGACCAGGGAAATTATGAATTCCCTGCAGGAGATGTTTGGACTCCCGTCCTATCAACTCCTCCACGAAGCC
TTGAAGAATCTCTTGGGTGA
Protein sequenceShow/hide protein sequence
MSSSIIALLKNEKLTGENFPTWKSNLNTILMVEDLRFVLTEECPPAPPSNDQGNYEFPAGDVWTPVLSTPPRSLEESLG