; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0025894 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025894
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description40S ribosomal protein S13
Genome locationchr10:23389755..23390830
RNA-Seq ExpressionLag0025894
SyntenyLag0025894
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039994.1 40S ribosomal protein S13 [Cucumis melo var. makuwa]1.6e-3092.31Show/hide
Query:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        VKSVTG KILRILKAHGLAPEI EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

KAF7810164.1 40S ribosomal protein S13 [Senna tora]1.6e-3092.31Show/hide
Query:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        VKSVTG KILRILKAHGLAPEI EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

PPD86677.1 hypothetical protein GOBAR_DD16380 [Gossypium barbadense]1.9e-3192.31Show/hide
Query:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        VKSVTG KILRILKAHGLAPEI EDLYHLIKK V+I+KHLERNRKDKDSKFRLILVESRIHCL RYYKKTKKLPPVWK
Subjt:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

XP_004153746.1 40S ribosomal protein S13 [Cucumis sativus]1.6e-3092.31Show/hide
Query:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        VKSVTG KILRILKAHGLAPEI EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

XP_008448906.1 PREDICTED: 40S ribosomal protein S13 [Cucumis melo]1.6e-3092.31Show/hide
Query:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        VKSVTG KILRILKAHGLAPEI EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

TrEMBL top hitse value%identityAlignment
A0A5A7T967 40S ribosomal protein S138.0e-3192.31Show/hide
Query:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        VKSVTG KILRILKAHGLAPEI EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

A0A6A5MIL6 40S ribosomal protein S138.0e-3192.31Show/hide
Query:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        VKSVTG KILRILKAHGLAPEI EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

A0A6J1HJQ7 40S ribosomal protein S13-like8.0e-3192.31Show/hide
Query:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        VKSVTG KILRILKAHGLAPEI EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

A0A6J5U4E2 Ribosomal_S13_N domain-containing protein8.0e-3192.31Show/hide
Query:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        VKSVTG KILRILKAHGLAPEI EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L+RYYKKTKKLPPVWK
Subjt:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

M5XE15 Ribosomal_S13_N domain-containing protein8.0e-3192.31Show/hide
Query:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        VKSVTG KILRILKAHGLAPEI EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L+RYYKKTKKLPPVWK
Subjt:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S133.1e-3291.03Show/hide
Query:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        VKSVTG KILRILKAHGLAPEI EDLYHLIKK VSI+KHLER RKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

P59223 40S ribosomal protein S13-16.3e-3391.03Show/hide
Query:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        VKSVTG KILRILKAHGLAPEI EDLYHLIKK V+I+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

P59224 40S ribosomal protein S13-26.3e-3391.03Show/hide
Query:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        VKSVTG KILRILKAHGLAPEI EDLYHLIKK V+I+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

P62302 40S ribosomal protein S131.1e-3291.03Show/hide
Query:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        V SVTG KILRILKAHGLAPEI EDLYHLIKK VSI+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

Q69UI2 40S ribosomal protein S13-11.6e-3187.34Show/hide
Query:  LVKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        LVKSVTG KILRILKAHGLAPEI EDLY LIKK V+I+KHLERNRKDKDSKFRLILVESRIH L RYYK+TKKLPP WK
Subjt:  LVKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S154.5e-3491.03Show/hide
Query:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        VKSVTG KILRILKAHGLAPEI EDLYHLIKK V+I+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK

AT4G00100.1 ribosomal protein S13A4.5e-3491.03Show/hide
Query:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK
        VKSVTG KILRILKAHGLAPEI EDLYHLIKK V+I+KHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  VKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCAAAAAGGAAAGGAACCAAGGGGTGTCAATGTAAGGCCTTGGGCCTTGGGGGCTGAGGAGAGTAGGTCTAGCATGTATATCTTGTTCTTGGTGAAAAGTGTAAC
TGGGCGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTGAAATCCTGGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAAAAAGCATTTGGAGA
GAAACAGGAAAGACAAGGATTCCAAGTTTAGGTTGATTTTGGTGGAGAGCAGGATCCATTGCCTGACCCGATATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAG
TAG
mRNA sequenceShow/hide mRNA sequence
ATGATGCAAAAAGGAAAGGAACCAAGGGGTGTCAATGTAAGGCCTTGGGCCTTGGGGGCTGAGGAGAGTAGGTCTAGCATGTATATCTTGTTCTTGGTGAAAAGTGTAAC
TGGGCGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTGAAATCCTGGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAAAAAGCATTTGGAGA
GAAACAGGAAAGACAAGGATTCCAAGTTTAGGTTGATTTTGGTGGAGAGCAGGATCCATTGCCTGACCCGATATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAG
TAG
Protein sequenceShow/hide protein sequence
MMQKGKEPRGVNVRPWALGAEESRSSMYILFLVKSVTGRKILRILKAHGLAPEILEDLYHLIKKVVSIKKHLERNRKDKDSKFRLILVESRIHCLTRYYKKTKKLPPVWK