; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0025898 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025898
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr10:23614653..23615114
RNA-Seq ExpressionLag0025898
SyntenyLag0025898
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039476.1 uncharacterized protein E6C27_scaffold64G002900 [Cucumis melo var. makuwa]4.1e-2755.96Show/hide
Query:  KKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLLQGAAQDWWRSILSRRTDAEGMAWQEFKRVFFEKYYPRSFQD
        + DP K   IERL  LGA  F G  +PTD E W+  IE   +V  CPED+KV LA +LLQ  A+DWWR   SRR     ++W EFK+ FF+K+YPRSF+D
Subjt:  KKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLLQGAAQDWWRSILSRRTDAEGMAWQEFKRVFFEKYYPRSFQD

Query:  AKRNEFLRL
        AKRNEFLRL
Subjt:  AKRNEFLRL

KAA0060484.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]5.3e-2755.96Show/hide
Query:  KKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLLQGAAQDWWRSILSRRTDAEGMAWQEFKRVFFEKYYPRSFQD
        + DP K   IERL  LGA  F G  +P DAE W+  IE   +V  CPED+KV LA +LLQ  A+DWWR   SRR     ++W EFK+ FF+K+YPRSF+D
Subjt:  KKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLLQGAAQDWWRSILSRRTDAEGMAWQEFKRVFFEKYYPRSFQD

Query:  AKRNEFLRL
        AKRNEFLRL
Subjt:  AKRNEFLRL

TYK15233.1 uncharacterized protein E5676_scaffold892G00030 [Cucumis melo var. makuwa]4.1e-2755.96Show/hide
Query:  KKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLLQGAAQDWWRSILSRRTDAEGMAWQEFKRVFFEKYYPRSFQD
        + DP K   IERL  LGA  F G  +PTD E W+  IE   +V  CPED+KV LA +LLQ  A+DWWR   SRR     ++W EFK+ FF+K+YPRSF+D
Subjt:  KKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLLQGAAQDWWRSILSRRTDAEGMAWQEFKRVFFEKYYPRSFQD

Query:  AKRNEFLRL
        AKRNEFLRL
Subjt:  AKRNEFLRL

XP_038877203.1 uncharacterized protein LOC120069501 [Benincasa hispida]2.6e-2646.77Show/hide
Query:  MVSITHGVAEAIKMLKKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLLQGAAQDWWRSILSRRTDAEGMAWQEF
        M   T  +  +++ ++ DP K   IERL  LGA  F G   P DAE+WM+ IE   KVM CP+ +KVSLAT+LLQ   +DWW+ + +R+ D E + W+EF
Subjt:  MVSITHGVAEAIKMLKKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLLQGAAQDWWRSILSRRTDAEGMAWQEF

Query:  KRVFFEKYYPRSFQDAKRNEFLRL
        ++ FFE++YPRSF+D K++EFL++
Subjt:  KRVFFEKYYPRSFQDAKRNEFLRL

XP_038877272.1 uncharacterized protein LOC120069556 [Benincasa hispida]3.4e-2645.33Show/hide
Query:  EGDVGGSSHEREEYRGKRSAEEKQELMVSITHGVAEAIKMLKKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLL
        E D G SSH + E          +++M      +AE +  +  DP K   IERL  LGA  F G ++P DAE W   +E   +VM CPED+KV+LAT+LL
Subjt:  EGDVGGSSHEREEYRGKRSAEEKQELMVSITHGVAEAIKMLKKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLL

Query:  QGAAQDWWRSILSRRTDAEGMAWQEFKRVFFEKYYPRSFQDAKRNEFLRL
        Q  A+DWWR    RR   E + W+EF + F EK+YP++F+DAKRNEFL+L
Subjt:  QGAAQDWWRSILSRRTDAEGMAWQEFKRVFFEKYYPRSFQDAKRNEFLRL

TrEMBL top hitse value%identityAlignment
A0A5A7TBS0 CCHC-type domain-containing protein2.0e-2755.96Show/hide
Query:  KKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLLQGAAQDWWRSILSRRTDAEGMAWQEFKRVFFEKYYPRSFQD
        + DP K   IERL  LGA  F G  +PTD E W+  IE   +V  CPED+KV LA +LLQ  A+DWWR   SRR     ++W EFK+ FF+K+YPRSF+D
Subjt:  KKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLLQGAAQDWWRSILSRRTDAEGMAWQEFKRVFFEKYYPRSFQD

Query:  AKRNEFLRL
        AKRNEFLRL
Subjt:  AKRNEFLRL

A0A5A7UI35 Reverse transcriptase5.3e-2545.67Show/hide
Query:  ELMVSITHGVAEAIKMLKKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLLQGAAQDWWRSILSRRTDAEGMAWQ
        E     T  +    ++   DP K  +IERL  LGA  F G   P DAE W++ +E    VM CPE++KV LAT+LLQ  A+ WW+SIL+RR+DA  + WQ
Subjt:  ELMVSITHGVAEAIKMLKKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLLQGAAQDWWRSILSRRTDAEGMAWQ

Query:  EFKRVFFEKYYPRSFQDAKRNEFLRLE
         F+ +F +KYYP ++ +AKR+EFL L+
Subjt:  EFKRVFFEKYYPRSFQDAKRNEFLRLE

A0A5A7UZM6 Gag protease polyprotein-like protein2.6e-2755.96Show/hide
Query:  KKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLLQGAAQDWWRSILSRRTDAEGMAWQEFKRVFFEKYYPRSFQD
        + DP K   IERL  LGA  F G  +P DAE W+  IE   +V  CPED+KV LA +LLQ  A+DWWR   SRR     ++W EFK+ FF+K+YPRSF+D
Subjt:  KKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLLQGAAQDWWRSILSRRTDAEGMAWQEFKRVFFEKYYPRSFQD

Query:  AKRNEFLRL
        AKRNEFLRL
Subjt:  AKRNEFLRL

A0A5D3BB91 Reverse transcriptase1.4e-2542Show/hide
Query:  EGDVGGSSHEREEYRGKRSAEEKQELMVSITHGVAEAIKMLKKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLL
        E  +G    + E  R +     +++L+  +   +   I+  + DP K    ERL  LGA  F G  +PTD E W+  IE   +V    ED+KV LA +LL
Subjt:  EGDVGGSSHEREEYRGKRSAEEKQELMVSITHGVAEAIKMLKKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLL

Query:  QGAAQDWWRSILSRRTDAEGMAWQEFKRVFFEKYYPRSFQDAKRNEFLRL
        Q  A+DWWR   SRR     M+W EFK+ FF+K+YPRSF+DAK NEF+RL
Subjt:  QGAAQDWWRSILSRRTDAEGMAWQEFKRVFFEKYYPRSFQDAKRNEFLRL

A0A5D3CTK6 CCHC-type domain-containing protein2.0e-2755.96Show/hide
Query:  KKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLLQGAAQDWWRSILSRRTDAEGMAWQEFKRVFFEKYYPRSFQD
        + DP K   IERL  LGA  F G  +PTD E W+  IE   +V  CPED+KV LA +LLQ  A+DWWR   SRR     ++W EFK+ FF+K+YPRSF+D
Subjt:  KKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLLQGAAQDWWRSILSRRTDAEGMAWQEFKRVFFEKYYPRSFQD

Query:  AKRNEFLRL
        AKRNEFLRL
Subjt:  AKRNEFLRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAAGGTGATGTAGGAGGGTCAAGTCATGAACGAGAGGAGTATCGAGGGAAAAGAAGTGCGGAGGAAAAGCAAGAACTGATGGTTAGCATCACCCACGGTGTAGC
AGAGGCGATAAAGATGCTCAAGAAAGATCCAACAAAGAATATTAAAATCGAACGACTCATAACCTTGGGGGCAAAACCTTTTCTAGGCAAAGTCAGTCCCACCGATGCAG
AACAGTGGATGGATAATATTGAAACTGGATTAAAGGTTATGGAGTGCCCAGAGGACAAGAAGGTATCATTAGCTACGTATCTCCTACAGGGAGCAGCTCAAGATTGGTGG
AGATCAATCTTGAGTAGACGAACAGATGCTGAAGGAATGGCTTGGCAAGAGTTTAAGAGGGTCTTTTTCGAAAAGTACTACCCACGATCTTTTCAGGATGCAAAGCGCAA
TGAATTTCTGAGACTTGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGAAGGTGATGTAGGAGGGTCAAGTCATGAACGAGAGGAGTATCGAGGGAAAAGAAGTGCGGAGGAAAAGCAAGAACTGATGGTTAGCATCACCCACGGTGTAGC
AGAGGCGATAAAGATGCTCAAGAAAGATCCAACAAAGAATATTAAAATCGAACGACTCATAACCTTGGGGGCAAAACCTTTTCTAGGCAAAGTCAGTCCCACCGATGCAG
AACAGTGGATGGATAATATTGAAACTGGATTAAAGGTTATGGAGTGCCCAGAGGACAAGAAGGTATCATTAGCTACGTATCTCCTACAGGGAGCAGCTCAAGATTGGTGG
AGATCAATCTTGAGTAGACGAACAGATGCTGAAGGAATGGCTTGGCAAGAGTTTAAGAGGGTCTTTTTCGAAAAGTACTACCCACGATCTTTTCAGGATGCAAAGCGCAA
TGAATTTCTGAGACTTGAGTAG
Protein sequenceShow/hide protein sequence
MDEGDVGGSSHEREEYRGKRSAEEKQELMVSITHGVAEAIKMLKKDPTKNIKIERLITLGAKPFLGKVSPTDAEQWMDNIETGLKVMECPEDKKVSLATYLLQGAAQDWW
RSILSRRTDAEGMAWQEFKRVFFEKYYPRSFQDAKRNEFLRLE