; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0025944 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025944
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr10:24859455..24869768
RNA-Seq ExpressionLag0025944
SyntenyLag0025944
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]8.5e-0356.6Show/hide
Query:  LQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV
        L+  R T+   L  G   L+   GYTDSDFQTDKDS K TSGS+FTLN G +V
Subjt:  LQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV
KAA0033121.1 gag/pol protein [Cucumis melo var. makuwa]3.0e-3277.66Show/hide
Query:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVMFMYKEE
        MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDK+LVRY M+NSKKGLLPFRH +HLSKEQ PKTPQEVEDM++IP ASA+G+LMYV+F  + E
Subjt:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVMFMYKEE
KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-3282.95Show/hide
Query:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVM
        MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDKLLVRY M+NSKKGLLPFRH +HLSKEQ PKTPQEVEDM++IP ASA+G+LMYVM
Subjt:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVM
KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]8.5e-0356.6Show/hide
Query:  LQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV
        L+  R T+   L  G   L+   GYTDSDFQTDKDS K TSGS+FTLN G +V
Subjt:  LQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV
KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]6.7e-3281.82Show/hide
Query:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVM
        MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDK+LVRY M+NSKKGLLPFRH +HLSKEQ PKTPQEVEDM++IP ASA+G+LMYVM
Subjt:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVM
KAA0062926.1 gag/pol protein [Cucumis melo var. makuwa]8.5e-0350Show/hide
Query:  ENW--LRKSLQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV
        ++W  ++  L+  R T+   L  G   L+   GYTDSDFQTDKDS K TSGS+FTLN G +V
Subjt:  ENW--LRKSLQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV
KAA0062926.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-3181.82Show/hide
Query:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVM
        MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDKLLVRY M+NSKKGLLPFRH +HLSKEQ PKTPQEVEDM++IP ASA+G+LMY M
Subjt:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVM
TYK16417.1 gag/pol protein [Cucumis melo var. makuwa]8.5e-0350Show/hide
Query:  ENW--LRKSLQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV
        ++W  ++  L+  R T+   L  G   L+   GYTDSDFQTDKDS K TSGS+FTLN G +V
Subjt:  ENW--LRKSLQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV
TYK16417.1 gag/pol protein [Cucumis melo var. makuwa]6.7e-3281.82Show/hide
Query:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVM
        MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDK+LVRY M+NSKKGLLPFRH +HLSKEQ PKTPQEVEDM++IP ASA+G+LMYVM
Subjt:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVM
TrEMBL top hitse value%identityAlignment
A0A5A7TKM4 Gag/pol protein2.5e-3282.95Show/hide
Query:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVM
        MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDKLLVRY M+NSKKGLLPFRH +HLSKEQ PKTPQEVEDM++IP ASA+G+LMYVM
Subjt:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVM
A0A5A7TKM4 Gag/pol protein4.1e-0356.6Show/hide
Query:  LQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV
        L+  R T+   L  G   L+   GYTDSDFQTDKDS K TSGS+FTLN G +V
Subjt:  LQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV
A0A5A7TKM4 Gag/pol protein3.2e-3281.82Show/hide
Query:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVM
        MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDK+LVRY M+NSKKGLLPFRH +HLSKEQ PKTPQEVEDM++IP ASA+G+LMYVM
Subjt:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVM
A0A5A7TZD0 Gag/pol protein4.1e-0356.6Show/hide
Query:  LQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV
        L+  R T+   L  G   L+   GYTDSDFQTDKDS K TSGS+FTLN G +V
Subjt:  LQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV
A0A5A7V901 Gag/pol protein4.1e-0350Show/hide
Query:  ENW--LRKSLQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV
        ++W  ++  L+  R T+   L  G   L+   GYTDSDFQTDKDS K TSGS+FTLN G +V
Subjt:  ENW--LRKSLQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV
A0A5A7V901 Gag/pol protein7.2e-3281.82Show/hide
Query:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVM
        MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDKLLVRY M+NSKKGLLPFRH +HLSKEQ PKTPQEVEDM++IP ASA+G+LMY M
Subjt:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVM
A0A5D3CWZ1 Gag/pol protein4.1e-0350Show/hide
Query:  ENW--LRKSLQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV
        ++W  ++  L+  R T+   L  G   L+   GYTDSDFQTDKDS K TSGS+FTLN G +V
Subjt:  ENW--LRKSLQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV
A0A5D3CWZ1 Gag/pol protein3.2e-3281.82Show/hide
Query:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVM
        MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDK+LVRY M+NSKKGLLPFRH +HLSKEQ PKTPQEVEDM++IP ASA+G+LMYVM
Subjt:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVM
A0A5D3CZY3 Gag/pol protein1.5e-3277.66Show/hide
Query:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVMFMYKEE
        MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDK+LVRY M+NSKKGLLPFRH +HLSKEQ PKTPQEVEDM++IP ASA+G+LMYV+F  + E
Subjt:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVMFMYKEE
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-1446.59Show/hide
Query:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVM
        MKDLG AQ +LG++IVR+R  + L LSQ  YI+++L R+ MKN+K    P    + LSK+  P T +E  +M ++P +SA+G+LMY M
Subjt:  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVM
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGATTTGGGTGGGGCTCAATATGTTCTAGGGCTCCAAATTGTTCGGGATCGTAAGGACAAGACCCTAGCTCTATCCCAGGCATCTTATATCGACAAGTTGTTGGT
TAGATATAAGATGAAGAATTCCAAGAAGGGTTTATTACCTTTTAGGCACGAAATTCATTTGTCAAAGGAACAATTACCTAAGACACCTCAAGAAGTTGAAGACATGAAAC
AAATTCCCCGTGCCTCTGCAATAGGCAACCTTATGTATGTTATGTTTATGTATAAGGAGGAAAGAACTTTAAAAAAGGCCTCAACCAAAGCATCCCAGGTGATAATGCTT
CTAGGGAGTATTGGCTACAACCAATCTCGTGCTTTATCCTGCAAAGAGAAAGGGAAAAGGCACTATCCCCGATTGCTGCCCCTGAAACACAGGCTGAAAATGGTCACAAA
TGGGTTTAGGCTCCTCAGGTGGATTTGGATTGGCCTTTTGGATAGAATCTTTATTCTTCCTTCGAAGCCTACTAATGGTCCTCTCAATCTCGGGGTACAAAGATCATACG
CGATCGTTACTGCCATTTCATTTCCTCCTCCTGCTGCTATTCTCCATCCTCTCTTCCTCCTCTGTCCACTGGAGGCCTCGTCGCCAAGAGGAAATAGGCCGAGTCTACAG
ACCAGAGAACTAGCCAGGGCTATTTCTATTGACTACATGACTGAGATATTGAGCCTGAGGCTATATGGTACCGTGTACACACAGGTAGAGATCGAGCTCCCGATGCCTGA
TACACTGCCAACGTTTGCTGAAAGCTCCAGATCGACTTCTAGTACGTGGGTGGAGTTGTACATTGAGTCTTTTTGTATTGTAAATGTCTTTCATGGTCAACAGGTATCGT
TAGAGGAGGACGATGTCTGTTGGCTTCACACCATCTTCCTGACTAAGCTAGCAGAAGAGGTCCTCCTCCCGTTTCGCTCCGGCGACAGAGGAGGGAGGCCCTCCTCCCTC
ACGATTTTAGATCTGAAACCACGAGGGAGGAAGGCCTCCCTCCTCCCATTTCGCGTCGCGCTGGCGATGGGAGGAGGGAGACCCTCCTCCCTCACTGTCTTCGGAAAGGG
AGGAGAGCCCTCCTCCCTTTCCCTCTTCTTTATAAAAAAAAAAAGAAAGAAAAGGTTGAGAAATAGAGGTGAAGAGAGAATAAAAGAGAGAAAGAAAAAAAAAACTTACT
GGCGACCGGCGGCGGCTGGCCAGCGAACGGCGGTGGCCGCCGGCCACCGGAGTTGGAGAAGAAGGAATGTGAGAAAAAGAAGTGGGCGAATGAAGGGCTCAAATGTCACC
AATTGGACTCCCCTTGGTCATAGCAAATCGTTATGTATTTATAGAAATCGCAGGACAACGTCGAGACGATGTGCCCTTGTCGCCTCAGATAATTTTAAGGTAAAAACTAA
CAGCATCGAGCAGACGCTATCCTATAGGGAAAATTGGCTTAGGAAGAGCCTACAACAGCGTCGAGCCACCAAAAGGCAGCGTCTCGACGCTGGTCTCTCGGGTTTACTAG
CTGCTGCAGGATACACTGATTCTGACTTTCAAACCGATAAAGATTCAACGAAATTTACTTCAGGATCGATATTCACCCTTAACAGGGGAGTTATAGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGATTTGGGTGGGGCTCAATATGTTCTAGGGCTCCAAATTGTTCGGGATCGTAAGGACAAGACCCTAGCTCTATCCCAGGCATCTTATATCGACAAGTTGTTGGT
TAGATATAAGATGAAGAATTCCAAGAAGGGTTTATTACCTTTTAGGCACGAAATTCATTTGTCAAAGGAACAATTACCTAAGACACCTCAAGAAGTTGAAGACATGAAAC
AAATTCCCCGTGCCTCTGCAATAGGCAACCTTATGTATGTTATGTTTATGTATAAGGAGGAAAGAACTTTAAAAAAGGCCTCAACCAAAGCATCCCAGGTGATAATGCTT
CTAGGGAGTATTGGCTACAACCAATCTCGTGCTTTATCCTGCAAAGAGAAAGGGAAAAGGCACTATCCCCGATTGCTGCCCCTGAAACACAGGCTGAAAATGGTCACAAA
TGGGTTTAGGCTCCTCAGGTGGATTTGGATTGGCCTTTTGGATAGAATCTTTATTCTTCCTTCGAAGCCTACTAATGGTCCTCTCAATCTCGGGGTACAAAGATCATACG
CGATCGTTACTGCCATTTCATTTCCTCCTCCTGCTGCTATTCTCCATCCTCTCTTCCTCCTCTGTCCACTGGAGGCCTCGTCGCCAAGAGGAAATAGGCCGAGTCTACAG
ACCAGAGAACTAGCCAGGGCTATTTCTATTGACTACATGACTGAGATATTGAGCCTGAGGCTATATGGTACCGTGTACACACAGGTAGAGATCGAGCTCCCGATGCCTGA
TACACTGCCAACGTTTGCTGAAAGCTCCAGATCGACTTCTAGTACGTGGGTGGAGTTGTACATTGAGTCTTTTTGTATTGTAAATGTCTTTCATGGTCAACAGGTATCGT
TAGAGGAGGACGATGTCTGTTGGCTTCACACCATCTTCCTGACTAAGCTAGCAGAAGAGGTCCTCCTCCCGTTTCGCTCCGGCGACAGAGGAGGGAGGCCCTCCTCCCTC
ACGATTTTAGATCTGAAACCACGAGGGAGGAAGGCCTCCCTCCTCCCATTTCGCGTCGCGCTGGCGATGGGAGGAGGGAGACCCTCCTCCCTCACTGTCTTCGGAAAGGG
AGGAGAGCCCTCCTCCCTTTCCCTCTTCTTTATAAAAAAAAAAAGAAAGAAAAGGTTGAGAAATAGAGGTGAAGAGAGAATAAAAGAGAGAAAGAAAAAAAAAACTTACT
GGCGACCGGCGGCGGCTGGCCAGCGAACGGCGGTGGCCGCCGGCCACCGGAGTTGGAGAAGAAGGAATGTGAGAAAAAGAAGTGGGCGAATGAAGGGCTCAAATGTCACC
AATTGGACTCCCCTTGGTCATAGCAAATCGTTATGTATTTATAGAAATCGCAGGACAACGTCGAGACGATGTGCCCTTGTCGCCTCAGATAATTTTAAGGTAAAAACTAA
CAGCATCGAGCAGACGCTATCCTATAGGGAAAATTGGCTTAGGAAGAGCCTACAACAGCGTCGAGCCACCAAAAGGCAGCGTCTCGACGCTGGTCTCTCGGGTTTACTAG
CTGCTGCAGGATACACTGATTCTGACTTTCAAACCGATAAAGATTCAACGAAATTTACTTCAGGATCGATATTCACCCTTAACAGGGGAGTTATAGTATGA
Protein sequenceShow/hide protein sequence
MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVMFMYKEERTLKKASTKASQVIML
LGSIGYNQSRALSCKEKGKRHYPRLLPLKHRLKMVTNGFRLLRWIWIGLLDRIFILPSKPTNGPLNLGVQRSYAIVTAISFPPPAAILHPLFLLCPLEASSPRGNRPSLQ
TRELARAISIDYMTEILSLRLYGTVYTQVEIELPMPDTLPTFAESSRSTSSTWVELYIESFCIVNVFHGQQVSLEEDDVCWLHTIFLTKLAEEVLLPFRSGDRGGRPSSL
TILDLKPRGRKASLLPFRVALAMGGGRPSSLTVFGKGGEPSSLSLFFIKKKRKKRLRNRGEERIKERKKKKTYWRPAAAGQRTAVAAGHRSWRRRNVRKRSGRMKGSNVT
NWTPLGHSKSLCIYRNRRTTSRRCALVASDNFKVKTNSIEQTLSYRENWLRKSLQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV