| GenBank top hits | e value | %identity | Alignment |
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| KAA0026286.1 gag/pol protein [Cucumis melo var. makuwa] | 1.3e-11 | 37.88 | Show/hide |
Query: QKKVNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDGV-----------------ILLTLKA-VNNSFPNENLGEAE---------------IALSQVSY
+K + DVDKD+ + MNLE + ++FNS+WDLV+ LDGV +L +K + F ++LGEA+ +ALSQ SY
Subjt: QKKVNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDGV-----------------ILLTLKA-VNNSFPNENLGEAE---------------IALSQVSY
Query: IYKMLVRYKMQNSKKGSLPYQGWNSLSEELCP
I K++V+Y MQNSK+G LP++ +LS++ CP
Subjt: IYKMLVRYKMQNSKKGSLPYQGWNSLSEELCP
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| KAA0033024.1 gag/pol protein [Cucumis melo var. makuwa] | 3.8e-08 | 36.43 | Show/hide |
Query: VNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDGVILLTLKAV------------------NNSFPNENLGEAE---------------IALSQVSYIYK
+NDVD DQ + M+LE +S++ NS+W LV+ + V ++ K + F ++LG A+ +A+SQ SYI K
Subjt: VNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDGVILLTLKAV------------------NNSFPNENLGEAE---------------IALSQVSYIYK
Query: MLVRYKMQNSKKGSLPYQGWNSLSEELCP
ML RYKMQNSKKG L Y+ LS+E CP
Subjt: MLVRYKMQNSKKGSLPYQGWNSLSEELCP
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| KAA0043583.1 putative Integrase core domain [Cucumis melo var. makuwa] | 2.6e-09 | 30.16 | Show/hide |
Query: MRNHEPQSKVDLSLKLMKLQEHQQELLMRLAVHQEL--------------------LMNQKKVNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDG----
MR+H+PQ K L L KL +QQ LLM+L HQEL L ++ +NDVDKDQ + MNLE +S++FN +W+LV+L +G
Subjt: MRNHEPQSKVDLSLKLMKLQEHQQELLMRLAVHQEL--------------------LMNQKKVNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDG----
Query: --------VILLTL-----------------------------------KAVNN--------------------------------SFPNENLGEAE---
V L L K +N F ++LGEA+
Subjt: --------VILLTL-----------------------------------KAVNN--------------------------------SFPNENLGEAE---
Query: ------------IALSQVSYIYKMLVRYKMQNSKKGSLPYQGWNSLSEELCP
+ALSQ +YI KMLVRY MQNSKKG LP++ LS+E CP
Subjt: ------------IALSQVSYIYKMLVRYKMQNSKKGSLPYQGWNSLSEELCP
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| KAA0045186.1 gag/pol protein [Cucumis melo var. makuwa] | 1.0e-13 | 40.41 | Show/hide |
Query: QELLMNQKKVNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDG--VILLTLKA-VNNSFPNEN-----------------------LGEAE---------
++ L ++ +NDVDKDQ V M+LE KS++FNS+W+LV+LL+G +++T K V +F N+N LGEA+
Subjt: QELLMNQKKVNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDG--VILLTLKA-VNNSFPNEN-----------------------LGEAE---------
Query: ------IALSQVSYIYKMLVRYKMQNSKKGSLPYQGWNSLSEELCP
+ALSQ +YI KMLVRY MQNSKKG LP++ LS+E CP
Subjt: ------IALSQVSYIYKMLVRYKMQNSKKGSLPYQGWNSLSEELCP
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| KAA0060254.1 gag/pol protein [Cucumis melo var. makuwa] | 3.4e-09 | 32.52 | Show/hide |
Query: QELLMNQKKVNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDGVILLTLKAV---------NNSFPNEN-------------------------------
++ L +K + DVDKD+ + MNLE +S++FNS+WDLV+ DGV + K + +F N+N
Subjt: QELLMNQKKVNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDGVILLTLKAV---------NNSFPNEN-------------------------------
Query: ---LGEAE---------------IALSQVSYIYKMLVRYKMQNSKKGSLPYQGWNSLSEELCP
LGEA+ +ALSQ SYI K++V+Y MQNSK+G LP++ +LS+E CP
Subjt: ---LGEAE---------------IALSQVSYIYKMLVRYKMQNSKKGSLPYQGWNSLSEELCP
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SP86 Gag/pol protein | 1.8e-08 | 36.43 | Show/hide |
Query: VNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDGVILLTLKAV------------------NNSFPNENLGEAE---------------IALSQVSYIYK
+NDVD DQ + M+LE +S++ NS+W LV+ + V ++ K + F ++LG A+ +A+SQ SYI K
Subjt: VNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDGVILLTLKAV------------------NNSFPNENLGEAE---------------IALSQVSYIYK
Query: MLVRYKMQNSKKGSLPYQGWNSLSEELCP
ML RYKMQNSKKG L Y+ LS+E CP
Subjt: MLVRYKMQNSKKGSLPYQGWNSLSEELCP
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| A0A5A7TJH9 Putative Integrase core domain | 1.3e-09 | 30.16 | Show/hide |
Query: MRNHEPQSKVDLSLKLMKLQEHQQELLMRLAVHQEL--------------------LMNQKKVNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDG----
MR+H+PQ K L L KL +QQ LLM+L HQEL L ++ +NDVDKDQ + MNLE +S++FN +W+LV+L +G
Subjt: MRNHEPQSKVDLSLKLMKLQEHQQELLMRLAVHQEL--------------------LMNQKKVNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDG----
Query: --------VILLTL-----------------------------------KAVNN--------------------------------SFPNENLGEAE---
V L L K +N F ++LGEA+
Subjt: --------VILLTL-----------------------------------KAVNN--------------------------------SFPNENLGEAE---
Query: ------------IALSQVSYIYKMLVRYKMQNSKKGSLPYQGWNSLSEELCP
+ALSQ +YI KMLVRY MQNSKKG LP++ LS+E CP
Subjt: ------------IALSQVSYIYKMLVRYKMQNSKKGSLPYQGWNSLSEELCP
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| A0A5A7UYX7 Gag/pol protein | 1.7e-09 | 32.52 | Show/hide |
Query: QELLMNQKKVNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDGVILLTLKAV---------NNSFPNEN-------------------------------
++ L +K + DVDKD+ + MNLE +S++FNS+WDLV+ DGV + K + +F N+N
Subjt: QELLMNQKKVNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDGVILLTLKAV---------NNSFPNEN-------------------------------
Query: ---LGEAE---------------IALSQVSYIYKMLVRYKMQNSKKGSLPYQGWNSLSEELCP
LGEA+ +ALSQ SYI K++V+Y MQNSK+G LP++ +LS+E CP
Subjt: ---LGEAE---------------IALSQVSYIYKMLVRYKMQNSKKGSLPYQGWNSLSEELCP
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| A0A5D3DD29 Gag/pol protein | 6.1e-12 | 37.88 | Show/hide |
Query: QKKVNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDGV-----------------ILLTLKA-VNNSFPNENLGEAE---------------IALSQVSY
+K + DVDKD+ + MNLE + ++FNS+WDLV+ LDGV +L +K + F ++LGEA+ +ALSQ SY
Subjt: QKKVNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDGV-----------------ILLTLKA-VNNSFPNENLGEAE---------------IALSQVSY
Query: IYKMLVRYKMQNSKKGSLPYQGWNSLSEELCP
I K++V+Y MQNSK+G LP++ +LS++ CP
Subjt: IYKMLVRYKMQNSKKGSLPYQGWNSLSEELCP
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| A0A5D3DUH7 Gag/pol protein | 5.0e-14 | 40.41 | Show/hide |
Query: QELLMNQKKVNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDG--VILLTLKA-VNNSFPNEN-----------------------LGEAE---------
++ L ++ +NDVDKDQ V M+LE KS++FNS+W+LV+LL+G +++T K V +F N+N LGEA+
Subjt: QELLMNQKKVNDVDKDQRVNVMNLEKKSLHFNSIWDLVNLLDG--VILLTLKA-VNNSFPNEN-----------------------LGEAE---------
Query: ------IALSQVSYIYKMLVRYKMQNSKKGSLPYQGWNSLSEELCP
+ALSQ +YI KMLVRY MQNSKKG LP++ LS+E CP
Subjt: ------IALSQVSYIYKMLVRYKMQNSKKGSLPYQGWNSLSEELCP
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