CuGenDBv2

Gene ID	Lag0025964
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Ribosome biogenesis regulatory protein
Genome location	chr10:25644216..25649203
RNA-Seq Expression	Lag0025964
Synteny	Lag0025964
Gene Ontology terms	GO:0000055 - ribosomal large subunit export from nucleus (biological process) GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component) GO:0030687 - preribosome, large subunit precursor (cellular component)
InterPro domains	IPR007023 - Ribosomal biogenesis regulatory protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6589856.1 Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosperma subsp. sororia]

2.5e-11

63.49

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Query:  KQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD
        ++P+       K  L +  +GIKN KKDKI+YDEQTQTWKRRHGYD AN EENIPII+ KMTD
Subjt:  KQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD

KAG7023528.1 Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.5e-11

63.49

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Query:  KQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD
        ++P+       K  L +  +GIKN KKDKI+YDEQTQTWKRRHGYD AN EENIPII+ KMTD
Subjt:  KQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD

XP_022961058.1 ribosome biogenesis regulatory protein homolog [Cucurbita moschata]

2.5e-11

63.49

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Query:  KQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD
        ++P+       K  L +  +GIKN KKDKI+YDEQTQTWKRRHGYD AN EENIPII+ KMTD
Subjt:  KQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD

XP_022987784.1 ribosome biogenesis regulatory protein homolog [Cucurbita maxima]

2.5e-11

63.49

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Query:  KQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD
        ++P+       K  L +  +GIKN KKDKI+YDEQTQTWKRRHGYD AN EENIPII+ KMTD
Subjt:  KQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD

XP_023515967.1 ribosome biogenesis regulatory protein homolog isoform X1 [Cucurbita pepo subsp. pepo]

2.5e-11

63.49

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Query:  KQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD
        ++P+       K  L +  +GIKN KKDKI+YDEQTQTWKRRHGYD AN EENIPII+ KMTD
Subjt:  KQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LZY0 Ribosome biogenesis regulatory protein

1.0e-10

61.9

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Query:  KQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD
        ++P+       K  L +  KGIKN KKDK VYDEQT TWKRRHGYD AN E+NIPII+ KMTD
Subjt:  KQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD

A0A2P5ETZ1 Ribosome biogenesis regulatory protein

6.0e-11

79.55

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Query:  KGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD
        KGIKN KKDK+ YDEQT TWKRR+GYDHAN EEN+PII  KMTD
Subjt:  KGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD

A0A6J1CSP0 Ribosome biogenesis regulatory protein

1.6e-11

58.57

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Query:  DENVKEEKQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD
        ++++ + K P + E       L +  +GIKN KKDKI YDEQTQTWKRRHGYD AN EENIPII+ KMTD
Subjt:  DENVKEEKQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD

A0A6J1HAS5 Ribosome biogenesis regulatory protein

1.2e-11

63.49

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Query:  KQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD
        ++P+       K  L +  +GIKN KKDKI+YDEQTQTWKRRHGYD AN EENIPII+ KMTD
Subjt:  KQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD

A0A6J1JJT9 Ribosome biogenesis regulatory protein

1.2e-11

63.49

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Query:  KQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD
        ++P+       K  L +  +GIKN KKDKI+YDEQTQTWKRRHGYD AN EENIPII+ KMTD
Subjt:  KQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G37990.1 ribosome biogenesis regulatory protein (RRS1) family protein

1.4e-04

28.09

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Query:  DENVKEEKQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTDVRVV--IGDHLEDHHCKLNEEINISFYYLV
        ++++   K P + E         ++ KGI+  KK+K+V+DEQT  +KRRHGYD  N + ++PII+ K +D   V      L+D   ++ ++       L 
Subjt:  DENVKEEKQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTDVRVV--IGDHLEDHHCKLNEEINISFYYLV

Query:  IMDMPTQIVANPTPTVNATPVAKESKPSAGQKKKHEQTTTDLQRSQPSSESSRQKTQHDKQEGNGGEKPKCNSCGKHH
          +    + ++      + P+   S   A  KK  +    D+     +S +S  K   DK+    GEKP     GKHH
Subjt:  IMDMPTQIVANPTPTVNATPVAKESKPSAGQKKKHEQTTTDLQRSQPSSESSRQKTQHDKQEGNGGEKPKCNSCGKHH

Sequences

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CDS sequence

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ATGGTCGGGTCAGATTCCTCAACAACTAATTATCATAGAAAGGTACCTCTGGGGCTGGTTATCCCTAACGATGTTGTGAACGATGAAAACGTGAAGGAAGAAAAACAACC
AGTTGAACTCGAGTCGAAGGAACACAAAAAGATATTAGTTAGCATGAACAAAGGTATAAAGAACGTGAAAAAAGACAAGATTGTATATGATGAACAAACTCAAACATGGA
AGCGTCGTCATGGTTATGATCATGCAAATTATGAGGAGAACATACCCATCATTAAAGTCAAGATGACTGATGTGCGAGTAGTGATTGGAGATCACCTAGAAGACCATCAT
TGCAAGCTGAACGAGGAGATTAACATTTCCTTTTATTATCTTGTAATTATGGACATGCCTACTCAAATTGTAGCGAACCCAACACCAACTGTTAATGCAACTCCAGTAGC
CAAGGAGTCGAAGCCCAGCGCAGGACAAAAGAAGAAACACGAGCAGACAACTACCGACCTCCAACGATCTCAACCCTCATCCGAAAGTTCTAGACAGAAAACTCAGCATG
ACAAACAAGAGGGCAATGGGGGTGAGAAACCAAAGTGCAACTCTTGTGGAAAACATCATTGGGGTCAGTGCATGACAAGGAAAGGTATTAAGTTGAACCTTGAGGATTCT
CAACCTGATTATTTTGCTGCTCATTTTGCTCCAGCGGCTAGTTTTACTGCAACAAACGATTCTGCTGGGGGTTCGCTGGATCTTCAGGACCCTGCGAGAGACGCGACATG
TTATCCATTTGATTTTGGGTTCTACGCTGCTCTTTCCTTCTTCTCCTAA

mRNA sequence

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Protein sequence

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MVGSDSSTTNYHRKVPLGLVIPNDVVNDENVKEEKQPVELESKEHKKILVSMNKGIKNVKKDKIVYDEQTQTWKRRHGYDHANYEENIPIIKVKMTDVRVVIGDHLEDHH
CKLNEEINISFYYLVIMDMPTQIVANPTPTVNATPVAKESKPSAGQKKKHEQTTTDLQRSQPSSESSRQKTQHDKQEGNGGEKPKCNSCGKHHWGQCMTRKGIKLNLEDS
QPDYFAAHFAPAASFTATNDSAGGSLDLQDPARDATCYPFDFGFYAALSFFS

Lag0025964 (gene) of Sponge gourd (AG-4) v1 genome