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Lag0025971 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025971
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr10:25816351..25817037
RNA-Seq ExpressionLag0025971
SyntenyLag0025971
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151688.1 uncharacterized protein LOC111019603 [Momordica charantia]7.1e-4450.58Show/hide
Query:  ALQTMFNNMARRNARPLRNPIGVPEDSDESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEALFDLMKCNDTLKIRGVVFMLKDDARTWWNFMAGVEDH
        ALQ + +N     A     P        E+QF RDF+R+ PPTF+G+SE     E WI +LEAL+  + C+D LK++G VFML+ +A  WW+ +A VEDH
Subjt:  ALQTMFNNMARRNARPLRNPIGVPEDSDESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEALFDLMKCNDTLKIRGVVFMLKDDARTWWNFMAGVEDH

Query:  ANHPISWERFKDLLYDYYFPERVKDDKEAEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKRKIKRFIKG
         N PI+W   KDLLYDYYFP+ +KD+KE EFL+LTQ ++ V +YE+KF   SRFA DL+ T  RKIKRF++G
Subjt:  ANHPISWERFKDLLYDYYFPERVKDDKEAEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKRKIKRFIKG

XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]1.3e-4257.64Show/hide
Query:  ESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEALFDLMKCNDTLKIRGVVFMLKDDARTWWNFMAGVEDHANHPISWERFKDLLYDYYFPERVKDDKE
        E++F +DFKR+ PPTFDG+SE   A E WI +LEAL+  + C D  K++G VFML+ +A  WW+ +A  ED+AN PI W RFK+LLYDYY+PE VKD KE
Subjt:  ESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEALFDLMKCNDTLKIRGVVFMLKDDARTWWNFMAGVEDHANHPISWERFKDLLYDYYFPERVKDDKE

Query:  AEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKRKIKRFIKG
        AEFL+L QG+++V +YERKF   SRFA +L+ T   KIKRF+KG
Subjt:  AEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKRKIKRFIKG

XP_022156330.1 uncharacterized protein LOC111023250 [Momordica charantia]9.3e-4447.6Show/hide
Query:  PIPPLQEDNPSIPSVQYGVDPPPPPPPATPMLITLEALQTMFNNMARRNARPLRNPIGVPEDSDESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEAL
        P PP  E    I  ++ G     P PP+     TL  +  M  N       P R+    P+   E+QF +DFKR+ PPTFDG S+    AE W+ +LEAL
Subjt:  PIPPLQEDNPSIPSVQYGVDPPPPPPPATPMLITLEALQTMFNNMARRNARPLRNPIGVPEDSDESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEAL

Query:  FDLMKCNDTLKIRGVVFMLKDDARTWWNFMAGVEDHANHPISWERFKDLLYDYYFPERVKDDKEAEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKR
        +  + C D  K++G VFML+  A  WW+ +A  EDHAN P++W RFKDLLYDYY+PE VKD KEAEFL+ +QG++TV +YERKF   SRFA +L+ T   
Subjt:  FDLMKCNDTLKIRGVVFMLKDDARTWWNFMAGVEDHANHPISWERFKDLLYDYYFPERVKDDKEAEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKR

Query:  KIKRFIKG
        KIKRF+KG
Subjt:  KIKRFIKG

XP_022157413.1 uncharacterized protein LOC111024114 [Momordica charantia]6.0e-4345.67Show/hide
Query:  NPSIPSVQYGVDPPPPP-------PPATPMLITL-EALQTMFNNMARRNARPLRNPIGVPEDSDESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEAL
        +P++P +  G   PP P       P   P +  L EALQ + +N        ++ P       DE QF RDFKR  PP F+G SE P A E W+ +LEAL
Subjt:  NPSIPSVQYGVDPPPPP-------PPATPMLITL-EALQTMFNNMARRNARPLRNPIGVPEDSDESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEAL

Query:  FDLMKCNDTLKIRGVVFMLKDDARTWWNFMAGVEDHANHPISWERFKDLLYDYYFPERVKDDKEAEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKR
        +  + C+D  K+RG VFML+ +A  WW  +A  EDH N P++W RFKDLLY+YYFP  V+++K AEFL LTQGS+TV +YERKF   SRF    + T + 
Subjt:  FDLMKCNDTLKIRGVVFMLKDDARTWWNFMAGVEDHANHPISWERFKDLLYDYYFPERVKDDKEAEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKR

Query:  KIKRFIKG
        KI +FI G
Subjt:  KIKRFIKG

XP_022158637.1 uncharacterized protein LOC111025088 [Momordica charantia]9.0e-4752.72Show/hide
Query:  PPATPMLITL-EALQTMFNNMARRNARPLRNPIGVPEDSDESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEALFDLMKCNDTLKIRGVVFMLKDDAR
        P   P +  L EALQ + NN A         P        E+QF +DFKR+ PPTFDG SE   AAE W+ +LEAL+  + C D  K++GVVFML+ +A 
Subjt:  PPATPMLITL-EALQTMFNNMARRNARPLRNPIGVPEDSDESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEALFDLMKCNDTLKIRGVVFMLKDDAR

Query:  TWWNFMAGVEDHANHPISWERFKDLLYDYYFPERVKDDKEAEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKRKIKRFIKG
         WW+ +A  EDHAN P+ W RFKDLLYDYY+PE VKD KEAEFL+L QG++TV +YERKF   SRFA + + T   KIKRF+KG
Subjt:  TWWNFMAGVEDHANHPISWERFKDLLYDYYFPERVKDDKEAEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKRKIKRFIKG

TrEMBL top hitse value%identityAlignment
A0A6J1DCW8 uncharacterized protein LOC1110196033.4e-4450.58Show/hide
Query:  ALQTMFNNMARRNARPLRNPIGVPEDSDESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEALFDLMKCNDTLKIRGVVFMLKDDARTWWNFMAGVEDH
        ALQ + +N     A     P        E+QF RDF+R+ PPTF+G+SE     E WI +LEAL+  + C+D LK++G VFML+ +A  WW+ +A VEDH
Subjt:  ALQTMFNNMARRNARPLRNPIGVPEDSDESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEALFDLMKCNDTLKIRGVVFMLKDDARTWWNFMAGVEDH

Query:  ANHPISWERFKDLLYDYYFPERVKDDKEAEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKRKIKRFIKG
         N PI+W   KDLLYDYYFP+ +KD+KE EFL+LTQ ++ V +YE+KF   SRFA DL+ T  RKIKRF++G
Subjt:  ANHPISWERFKDLLYDYYFPERVKDDKEAEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKRKIKRFIKG

A0A6J1DQ01 uncharacterized protein LOC1110232504.5e-4447.6Show/hide
Query:  PIPPLQEDNPSIPSVQYGVDPPPPPPPATPMLITLEALQTMFNNMARRNARPLRNPIGVPEDSDESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEAL
        P PP  E    I  ++ G     P PP+     TL  +  M  N       P R+    P+   E+QF +DFKR+ PPTFDG S+    AE W+ +LEAL
Subjt:  PIPPLQEDNPSIPSVQYGVDPPPPPPPATPMLITLEALQTMFNNMARRNARPLRNPIGVPEDSDESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEAL

Query:  FDLMKCNDTLKIRGVVFMLKDDARTWWNFMAGVEDHANHPISWERFKDLLYDYYFPERVKDDKEAEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKR
        +  + C D  K++G VFML+  A  WW+ +A  EDHAN P++W RFKDLLYDYY+PE VKD KEAEFL+ +QG++TV +YERKF   SRFA +L+ T   
Subjt:  FDLMKCNDTLKIRGVVFMLKDDARTWWNFMAGVEDHANHPISWERFKDLLYDYYFPERVKDDKEAEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKR

Query:  KIKRFIKG
        KIKRF+KG
Subjt:  KIKRFIKG

A0A6J1DTA8 uncharacterized protein LOC1110241142.9e-4345.67Show/hide
Query:  NPSIPSVQYGVDPPPPP-------PPATPMLITL-EALQTMFNNMARRNARPLRNPIGVPEDSDESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEAL
        +P++P +  G   PP P       P   P +  L EALQ + +N        ++ P       DE QF RDFKR  PP F+G SE P A E W+ +LEAL
Subjt:  NPSIPSVQYGVDPPPPP-------PPATPMLITL-EALQTMFNNMARRNARPLRNPIGVPEDSDESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEAL

Query:  FDLMKCNDTLKIRGVVFMLKDDARTWWNFMAGVEDHANHPISWERFKDLLYDYYFPERVKDDKEAEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKR
        +  + C+D  K+RG VFML+ +A  WW  +A  EDH N P++W RFKDLLY+YYFP  V+++K AEFL LTQGS+TV +YERKF   SRF    + T + 
Subjt:  FDLMKCNDTLKIRGVVFMLKDDARTWWNFMAGVEDHANHPISWERFKDLLYDYYFPERVKDDKEAEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKR

Query:  KIKRFIKG
        KI +FI G
Subjt:  KIKRFIKG

A0A6J1DUM2 uncharacterized protein LOC1110232476.5e-4357.64Show/hide
Query:  ESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEALFDLMKCNDTLKIRGVVFMLKDDARTWWNFMAGVEDHANHPISWERFKDLLYDYYFPERVKDDKE
        E++F +DFKR+ PPTFDG+SE   A E WI +LEAL+  + C D  K++G VFML+ +A  WW+ +A  ED+AN PI W RFK+LLYDYY+PE VKD KE
Subjt:  ESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEALFDLMKCNDTLKIRGVVFMLKDDARTWWNFMAGVEDHANHPISWERFKDLLYDYYFPERVKDDKE

Query:  AEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKRKIKRFIKG
        AEFL+L QG+++V +YERKF   SRFA +L+ T   KIKRF+KG
Subjt:  AEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKRKIKRFIKG

A0A6J1DXQ7 uncharacterized protein LOC1110250884.3e-4752.72Show/hide
Query:  PPATPMLITL-EALQTMFNNMARRNARPLRNPIGVPEDSDESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEALFDLMKCNDTLKIRGVVFMLKDDAR
        P   P +  L EALQ + NN A         P        E+QF +DFKR+ PPTFDG SE   AAE W+ +LEAL+  + C D  K++GVVFML+ +A 
Subjt:  PPATPMLITL-EALQTMFNNMARRNARPLRNPIGVPEDSDESQFTRDFKRHRPPTFDGQSENPLAAERWIVDLEALFDLMKCNDTLKIRGVVFMLKDDAR

Query:  TWWNFMAGVEDHANHPISWERFKDLLYDYYFPERVKDDKEAEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKRKIKRFIKG
         WW+ +A  EDHAN P+ W RFKDLLYDYY+PE VKD KEAEFL+L QG++TV +YERKF   SRFA + + T   KIKRF+KG
Subjt:  TWWNFMAGVEDHANHPISWERFKDLLYDYYFPERVKDDKEAEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKRKIKRFIKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAAGAGAATCCGACGGGTGATATCAACGCTCAGCAAAAGGGCCAATCCTCCGATTCCCCCTTTGCAGGAAGATAATCCCTCGATTCCTTCTGTTCAGTACGGAGT
TGACCCTCCGCCCCCTCCGCCTCCTGCAACCCCTATGTTGATCACTCTAGAAGCCCTTCAGACCATGTTCAATAACATGGCTCGGAGAAATGCCAGACCACTACGGAACC
CTATTGGGGTACCTGAGGATTCAGATGAATCCCAGTTCACCAGGGACTTCAAACGCCATAGGCCTCCCACCTTTGACGGACAATCTGAGAATCCATTGGCAGCAGAGAGG
TGGATTGTTGATCTAGAGGCACTGTTTGACCTCATGAAATGTAATGATACCTTGAAGATCAGAGGAGTGGTCTTCATGTTAAAGGATGATGCTCGCACGTGGTGGAATTT
CATGGCAGGTGTCGAGGATCATGCTAACCATCCAATTTCGTGGGAAAGGTTCAAAGACCTGTTGTATGATTACTATTTCCCAGAGAGAGTCAAAGATGACAAAGAGGCTG
AATTCCTTTATTTGACCCAGGGAAGTATAACCGTAGTGAAGTATGAGAGGAAGTTTATTGTGCAATCACGCTTTGCTCCTGACCTCGTCAGCACGCCAAAGCGAAAGATC
AAGAGGTTCATTAAAGGGCCTCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCAAGAGAATCCGACGGGTGATATCAACGCTCAGCAAAAGGGCCAATCCTCCGATTCCCCCTTTGCAGGAAGATAATCCCTCGATTCCTTCTGTTCAGTACGGAGT
TGACCCTCCGCCCCCTCCGCCTCCTGCAACCCCTATGTTGATCACTCTAGAAGCCCTTCAGACCATGTTCAATAACATGGCTCGGAGAAATGCCAGACCACTACGGAACC
CTATTGGGGTACCTGAGGATTCAGATGAATCCCAGTTCACCAGGGACTTCAAACGCCATAGGCCTCCCACCTTTGACGGACAATCTGAGAATCCATTGGCAGCAGAGAGG
TGGATTGTTGATCTAGAGGCACTGTTTGACCTCATGAAATGTAATGATACCTTGAAGATCAGAGGAGTGGTCTTCATGTTAAAGGATGATGCTCGCACGTGGTGGAATTT
CATGGCAGGTGTCGAGGATCATGCTAACCATCCAATTTCGTGGGAAAGGTTCAAAGACCTGTTGTATGATTACTATTTCCCAGAGAGAGTCAAAGATGACAAAGAGGCTG
AATTCCTTTATTTGACCCAGGGAAGTATAACCGTAGTGAAGTATGAGAGGAAGTTTATTGTGCAATCACGCTTTGCTCCTGACCTCGTCAGCACGCCAAAGCGAAAGATC
AAGAGGTTCATTAAAGGGCCTCCATGA
Protein sequenceShow/hide protein sequence
MGKRIRRVISTLSKRANPPIPPLQEDNPSIPSVQYGVDPPPPPPPATPMLITLEALQTMFNNMARRNARPLRNPIGVPEDSDESQFTRDFKRHRPPTFDGQSENPLAAER
WIVDLEALFDLMKCNDTLKIRGVVFMLKDDARTWWNFMAGVEDHANHPISWERFKDLLYDYYFPERVKDDKEAEFLYLTQGSITVVKYERKFIVQSRFAPDLVSTPKRKI
KRFIKGPP