; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0025976 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025976
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr10:25928704..25929171
RNA-Seq ExpressionLag0025976
SyntenyLag0025976
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019163454.1 PREDICTED: uncharacterized protein LOC109159798 [Ipomoea nil]8.6e-2546.62Show/hide
Query:  YSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERASGQTI
        Y+I +NG   GS +  RGIRQ DP+S YLF+LCAEG S LL + E+  + +G+RI    P++SHLFF DDSL+F RA  ++ ++I+D  +MY  ASGQ I
Subjt:  YSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERASGQTI

Query:  NLEKSVFMASKNVEAGKIRELSETFGIKHTKTL
        N EKS  M S N +    R +++  G++ T  L
Subjt:  NLEKSVFMASKNVEAGKIRELSETFGIKHTKTL

XP_023880210.1 uncharacterized protein LOC111992560 [Quercus suber]8.6e-2544.27Show/hide
Query:  YSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERASGQTI
        +S+LING  +GS    RG+RQ DP+S YLFLLCAEGF++LL + E     +G+ I    P ISH  F DDSL+FC+A +++  ++ DI  +Y +ASGQ I
Subjt:  YSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERASGQTI

Query:  NLEKSVFMASKNVEAGKIRELSETFGIKHTK
        ++EKS  + S N    +   +  TFG+K  +
Subjt:  NLEKSVFMASKNVEAGKIRELSETFGIKHTK

XP_027086514.1 uncharacterized protein LOC113708252 [Coffea arabica]8.6e-2550Show/hide
Query:  MQYSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERASGQ
        + YS   NG S G    ERGIRQ DP+S YLFL+C+EGFS+LL + E   +  GLRI+   P I+HLFF DDSLIFC+A  +    +  I + YE+ASGQ
Subjt:  MQYSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERASGQ

Query:  TINLEKSVFMASKNVEAGKIRELSETFG
         INL+KS    SKNV     RE+  + G
Subjt:  TINLEKSVFMASKNVEAGKIRELSETFG

XP_027095016.1 uncharacterized protein LOC113715063 [Coffea arabica]8.6e-2550Show/hide
Query:  MQYSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERASGQ
        + YS   NG S G    ERGIRQ DP+S YLFL+C+EGFS+LL + E   +  GLRI+   P I+HLFF DDSLIFC+A  +    +  I + YE+ASGQ
Subjt:  MQYSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERASGQ

Query:  TINLEKSVFMASKNVEAGKIRELSETFG
         INL+KS    SKNV     RE+  + G
Subjt:  TINLEKSVFMASKNVEAGKIRELSETFG

XP_027150099.1 uncharacterized protein LOC113750302 [Coffea eugenioides]8.6e-2550Show/hide
Query:  MQYSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERASGQ
        + YS   NG S G    ERGIRQ DP+S YLFL+C+EGFS+LL + E   +  GLRI+   P I+HLFF DDSLIFC+A  +    +  I + YE+ASGQ
Subjt:  MQYSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERASGQ

Query:  TINLEKSVFMASKNVEAGKIRELSETFG
         INL+KS    SKNV     RE+  + G
Subjt:  TINLEKSVFMASKNVEAGKIRELSETFG

TrEMBL top hitse value%identityAlignment
A0A5B7BAS3 Reverse transcriptase domain-containing protein (Fragment)2.7e-2451.16Show/hide
Query:  MQYSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERASGQ
        + Y +L+NGLS G+    RG+RQ DP+S YLFLLC EG SSLL   E   +  GLRI   CP I+HLFF DDSLIFCRA  +  + +R I   YE  SGQ
Subjt:  MQYSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERASGQ

Query:  TINLEKSVFMASKNVEAGKIRELSETFGI
        TINL+KS    S N      R LS    I
Subjt:  TINLEKSVFMASKNVEAGKIRELSETFGI

A0A6J1DUG8 uncharacterized protein LOC1110241352.7e-2443.38Show/hide
Query:  MQYSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERA-SG
        +++++LING+        RG+RQ DP+S YLF++CAEG S+L+  EE   N   L+IN  CP ISHLF+ DD L+F +A   + +SI+ I + YE+A SG
Subjt:  MQYSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERA-SG

Query:  QTINLEKSVFMASKNVEAGKIRELSETFGIKHTKTL
        Q INL+KS+F+ SKN +   +  + +   + HT++L
Subjt:  QTINLEKSVFMASKNVEAGKIRELSETFGIKHTKTL

A0A6P6U7W1 uncharacterized protein LOC1137082524.1e-2550Show/hide
Query:  MQYSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERASGQ
        + YS   NG S G    ERGIRQ DP+S YLFL+C+EGFS+LL + E   +  GLRI+   P I+HLFF DDSLIFC+A  +    +  I + YE+ASGQ
Subjt:  MQYSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERASGQ

Query:  TINLEKSVFMASKNVEAGKIRELSETFG
         INL+KS    SKNV     RE+  + G
Subjt:  TINLEKSVFMASKNVEAGKIRELSETFG

A0A6P6UXA4 uncharacterized protein LOC1137150634.1e-2550Show/hide
Query:  MQYSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERASGQ
        + YS   NG S G    ERGIRQ DP+S YLFL+C+EGFS+LL + E   +  GLRI+   P I+HLFF DDSLIFC+A  +    +  I + YE+ASGQ
Subjt:  MQYSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERASGQ

Query:  TINLEKSVFMASKNVEAGKIRELSETFG
         INL+KS    SKNV     RE+  + G
Subjt:  TINLEKSVFMASKNVEAGKIRELSETFG

A0A6P6XBX0 uncharacterized protein LOC1137410632.7e-2449.21Show/hide
Query:  YSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERASGQTI
        YS   NG + G  V +RGIRQ DP+S YLFL+C+EGFS+LL + E  ++  GLRI+   P I+HLFF DDSLIFC+A ++  K +  I + YE ASGQ I
Subjt:  YSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERASGQTI

Query:  NLEKSVFMASKNVEAGKIRELSETFG
        NLEKS    SKN+   + +++  + G
Subjt:  NLEKSVFMASKNVEAGKIRELSETFG

SwissProt top hitse value%identityAlignment
P92555 Uncharacterized mitochondrial protein AtMg012501.6e-1044.12Show/hide
Query:  LINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDS
        +ING   G     RG+RQ DP+S YLF+LC E  S L  R +      G+R++N+ P I+HL F DD+
Subjt:  LINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDS

Arabidopsis top hitse value%identityAlignment
ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)1.2e-1144.12Show/hide
Query:  LINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDS
        +ING   G     RG+RQ DP+S YLF+LC E  S L  R +      G+R++N+ P I+HL F DD+
Subjt:  LINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATACTCTATTCTCATCAATGGGCTCTCGTATGGCTCCTCGGTTCGGGAACGAGGCATAAGACAAAGCGATCCAATATCCCTATACCTCTTTTTGCTATGTGCGGA
GGGATTTTCAAGTCTTCTCATCAGGGAAGAATCTCTATCAAACTTTTATGGTCTTCGTATAAATAACCATTGCCCCACTATTTCCCATTTATTTTTTGTTGATGATAGTT
TGATTTTTTGTAGGGCGCTAGAGAAGGACTACAAGAGTATTAGAGATATTCCTCAGATGTACGAGCGGGCATCGGGTCAAACAATCAATCTGGAGAAATCAGTGTTCATG
GCTAGCAAAAATGTTGAGGCTGGAAAAATTCGAGAGCTGAGCGAGACTTTTGGAATAAAGCATACCAAGACATTGGTCAATATCTTGGAATGCCTTCTCAATACTCTTGA
GATAAGGGTTCTCTCTTCAAAAAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAATACTCTATTCTCATCAATGGGCTCTCGTATGGCTCCTCGGTTCGGGAACGAGGCATAAGACAAAGCGATCCAATATCCCTATACCTCTTTTTGCTATGTGCGGA
GGGATTTTCAAGTCTTCTCATCAGGGAAGAATCTCTATCAAACTTTTATGGTCTTCGTATAAATAACCATTGCCCCACTATTTCCCATTTATTTTTTGTTGATGATAGTT
TGATTTTTTGTAGGGCGCTAGAGAAGGACTACAAGAGTATTAGAGATATTCCTCAGATGTACGAGCGGGCATCGGGTCAAACAATCAATCTGGAGAAATCAGTGTTCATG
GCTAGCAAAAATGTTGAGGCTGGAAAAATTCGAGAGCTGAGCGAGACTTTTGGAATAAAGCATACCAAGACATTGGTCAATATCTTGGAATGCCTTCTCAATACTCTTGA
GATAAGGGTTCTCTCTTCAAAAAGATAA
Protein sequenceShow/hide protein sequence
MQYSILINGLSYGSSVRERGIRQSDPISLYLFLLCAEGFSSLLIREESLSNFYGLRINNHCPTISHLFFVDDSLIFCRALEKDYKSIRDIPQMYERASGQTINLEKSVFM
ASKNVEAGKIRELSETFGIKHTKTLVNILECLLNTLEIRVLSSKR