; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0025978 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025978
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr10:25958181..25959054
RNA-Seq ExpressionLag0025978
SyntenyLag0025978
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5471784.1 hypothetical protein F2P56_008554 [Juglans regia]2.3e-3643.85Show/hide
Query:  KTEIKKLMWLSHDFSKNKKTEWNIKFY------TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCN
        K ++    WL + F++    E N   +      +PGPDG    F+   W +VG  V    L+ LNH  SL  +NDT ++LIPK + P+K+ +Y+PISLCN
Subjt:  KTEIKKLMWLSHDFSKNKKTEWNIKFY------TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCN

Query:  VTYKQTSKAIINRFNGVLNLIIAPNQSTFILGHCVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGF
        V YK  SK I NR   +L  IIAPNQS F+ G  + DN ++ YE LHS+ S   G++G+  +KLDMSKAY RVEW F+E +M++  F
Subjt:  VTYKQTSKAIINRFNGVLNLIIAPNQSTFILGHCVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGF

XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]8.6e-3952.9Show/hide
Query:  PGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTFILGHC
        PGPDGL  +FF   W +VG  +  + LH+LN   +L  LN T + LIPK + PRK++E++PISLCNV Y+  +KAI NR   +LN II+PNQS FI    
Subjt:  PGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTFILGHC

Query:  VVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGFDA
        + DN I+GYECLH ++  K  R G   LKLD+SKAY RVEW FLEQ M   GF A
Subjt:  VVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGFDA

XP_030505314.1 uncharacterized protein LOC115720302 [Cannabis sativa]1.8e-3650.65Show/hide
Query:  TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTFILGH
        +PGPDG+S  FF + WS +GP++  + L VLN+      +N TL+TLIPK K P  + +Y+PISLCNV YK  SKAI+ R   VL+L+I+  QS FI   
Subjt:  TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTFILGH

Query:  CVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGF
         ++DN ++ YE LH L++   GR  +A LKLDMSKA+ RVEW FLE+V+L+ GF
Subjt:  CVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGF

XP_040999571.1 uncharacterized protein LOC121245775 [Juglans microcarpa x Juglans regia]3.3e-3846.07Show/hide
Query:  WLSHDFSKNKKTEWNIKFY---TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCNVTYKQTSKAII
        WLS+ F++   T    +     +PGPDG    F+   W ++G  V +  L+ LNH  SL  +NDT +TLIPK + P+++++Y PISLCNV YK  SK + 
Subjt:  WLSHDFSKNKKTEWNIKFY---TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCNVTYKQTSKAII

Query:  NRFNGVLNLIIAPNQSTFILGHCVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGFDA
        NR   +L  IIAPNQS F+LG  + DN ++ YE LHS+ S   G++G+  LKLDMSKAY RVEW F+E +M++  F A
Subjt:  NRFNGVLNLIIAPNQSTFILGHCVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGFDA

XP_042944621.1 uncharacterized protein LOC122278504 [Carya illinoinensis]6.2e-3745.95Show/hide
Query:  AKTEIKKLMWLSHDFSKNKKTEWNIKFY---TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCNVT
        +K   +   WL + F+K +  E   +     +PGPDG    FF   W +VG  V    L VLNHN SL  +NDT ++LIPK   P+K+ EY+PISLCNV 
Subjt:  AKTEIKKLMWLSHDFSKNKKTEWNIKFY---TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCNVT

Query:  YKQTSKAIINRFNGVLNLIIAPNQSTFILGHCVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGF
        YK  SK I NR   +L  +I+ NQS F+    + DN ++ YE LHS+KS   G++G   LKLDMSKAY RVEWCF++ VM++  F
Subjt:  YKQTSKAIINRFNGVLNLIIAPNQSTFILGHCVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGF

TrEMBL top hitse value%identityAlignment
A0A803NL40 Uncharacterized protein2.1e-3850.64Show/hide
Query:  TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTFILGH
        +PG DG+S  F+   W +VGP V    L +LN   +L  +N  L+TLIPK + P ++ EY+PISLC+V YK  SKAI+NRF       I+ NQS F+LG 
Subjt:  TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTFILGH

Query:  CVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGFDA
         + DN ++ +E +H LK+ K GR G+ATLKLDM KA+ RVEW FLE+VM + GFDA
Subjt:  CVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGFDA

A0A803P119 Uncharacterized protein8.7e-3750Show/hide
Query:  TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTFILGH
        +PGPDG+S  F    WS+VGP V  + L VLN+N    L+N+TL+TLIPK K P  +  ++PISLCNV YK  SK I+ R    L L+I+ NQS F+   
Subjt:  TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTFILGH

Query:  CVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGF
         + DN ++ +E LH LK+  MG++G++T+KLDMSKA+ RVEW F+E V+L+ GF
Subjt:  CVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGF

A0A803PQT0 Uncharacterized protein3.3e-3648.41Show/hide
Query:  KFYTPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTFI
        ++ +PG DG+S  F+ ++W +VG  V  + L VLN+     LLN TL+TLIPK K P K+ +Y+PISLCNV YK  SK I+ R    L+L+I+  QS F+
Subjt:  KFYTPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTFI

Query:  LGHCVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGF
          H + DN ++ +E LHS+K+ K G +G+A +KLDMSKA+ RVEW  ++QVML+ GF
Subjt:  LGHCVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGF

A0A803PXR5 Uncharacterized protein6.7e-3751.3Show/hide
Query:  TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTFILGH
        +PG DG+S  F+ ++WS+VGP V  + L VLN+     LLN TL+TLIPK K P K+ +Y+PISLCNV YK  SK I+ R    L+L+I+  QS F+   
Subjt:  TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTFILGH

Query:  CVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGF
         + DN ++ +E LHSLK+ K G +G+A +KLDMSKA+ RVEW F++QVML+ GF
Subjt:  CVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGF

A0A803QGA2 Uncharacterized protein2.1e-3848.7Show/hide
Query:  TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTFILGH
        +PGPDG+S  F+   W +VGP V  + L+ ++    +  +ND+L+TLIPK + P  + E++PISLCNV YK  SK +INR   +L L+I+ NQS F+ G 
Subjt:  TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKTKMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTFILGH

Query:  CVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGF
         + D+ ++ YECLH+LK+ K+GRR +  +KLDMSKAY RVEW F+E++ML+ GF
Subjt:  CVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGF

SwissProt top hitse value%identityAlignment
P08548 LINE-1 reverse transcriptase homolog8.2e-0825Show/hide
Query:  TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKT-KMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTFILG
        +PGPDG +  F+ +F   + P +++ + ++    +      +  +TLIPK  K P +   Y+PISL N+  K  +K + NR    +  II  +Q  FI G
Subjt:  TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLIPKT-KMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTFILG

Query:  HCVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGFD
             N       +  +  +K+  +    L +D  KA+  ++  F+ + + + G +
Subjt:  HCVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGFD

P11369 LINE-1 retrotransposable element ORF2 protein1.8e-1030.32Show/hide
Query:  TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSL-GLLNDTLVTLIPK-TKMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTFIL
        +PGPDG S  F+ +F   + P ++H   H +    +L     +  +TLIPK  K P K+  ++PISL N+  K  +K + NR    +  II P+Q  FI 
Subjt:  TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSL-GLLNDTLVTLIPK-TKMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTFIL

Query:  GHCVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKG
        G     N       +H +  +K+  +    + LD  KA+ +++  F+ +V+ R G
Subjt:  GHCVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKG

P14381 Transposon TX1 uncharacterized 149 kDa protein1.0e-1032.21Show/hide
Query:  TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLL----NDTLVTLIPKTKMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTF
        +PG DGL+  FF  FW  +GP     +  VL      G L       +++L+PK    R +  ++P+SL +  YK  +KAI  R   VL  +I P+QS  
Subjt:  TPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLL----NDTLVTLIPKTKMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTF

Query:  ILGHCVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFL
        + G  + DN  +  + LH  +   +     A L LD  KA+ RV+  +L
Subjt:  ILGHCVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFL

Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases6.2e-1137.18Show/hide
Query:  IINRFNGVLNLIIAPNQSTFILGHCVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGF
        ++ R   ++  +I P Q++FI G    DN +   E +HS++  K G +GW  LKLD+ KAY R+ W +LE  ++  GF
Subjt:  IINRFNGVLNLIIAPNQSTFILGHCVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAATCTAGCAGCGGCGACTCATAGGATCTTGACGTTCATAATCACCAGAAAAACGAGCAGGCGTTATTCACCAATCAACTACTTTGCCCGCTTTCCAGCTAAGAC
TGAAATAAAGAAGCTCATGTGGCTATCACATGACTTCAGTAAGAATAAGAAAACAGAATGGAATATCAAATTCTACACTCCTGGTCCAGATGGGCTTTCGGGATCCTTTT
TTGGTTCCTTCTGGTCATTGGTGGGGCCATATGTGGTGCACTCTTATCTTCATGTTCTGAATCATAATGTTTCTCTTGGTCTGCTGAATGATACTTTGGTCACCCTTATC
CCAAAAACGAAGATGCCTAGGAAGTTATTAGAATATCAACCCATTTCGCTATGTAATGTTACATACAAACAGACCTCTAAGGCCATAATTAACAGATTTAATGGTGTGTT
GAATTTGATTATTGCACCTAACCAAAGTACCTTCATTCTTGGGCATTGTGTTGTTGATAATGCTATTATGGGTTATGAATGCCTCCATTCTCTGAAATCTCATAAGATGG
GTAGGAGGGGTTGGGCTACGCTTAAATTGGATATGAGCAAAGCATATGGCAGGGTTGAGTGGTGCTTCCTTGAGCAAGTTATGTTACGCAAGGGTTTTGATGCTGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGAATCTAGCAGCGGCGACTCATAGGATCTTGACGTTCATAATCACCAGAAAAACGAGCAGGCGTTATTCACCAATCAACTACTTTGCCCGCTTTCCAGCTAAGAC
TGAAATAAAGAAGCTCATGTGGCTATCACATGACTTCAGTAAGAATAAGAAAACAGAATGGAATATCAAATTCTACACTCCTGGTCCAGATGGGCTTTCGGGATCCTTTT
TTGGTTCCTTCTGGTCATTGGTGGGGCCATATGTGGTGCACTCTTATCTTCATGTTCTGAATCATAATGTTTCTCTTGGTCTGCTGAATGATACTTTGGTCACCCTTATC
CCAAAAACGAAGATGCCTAGGAAGTTATTAGAATATCAACCCATTTCGCTATGTAATGTTACATACAAACAGACCTCTAAGGCCATAATTAACAGATTTAATGGTGTGTT
GAATTTGATTATTGCACCTAACCAAAGTACCTTCATTCTTGGGCATTGTGTTGTTGATAATGCTATTATGGGTTATGAATGCCTCCATTCTCTGAAATCTCATAAGATGG
GTAGGAGGGGTTGGGCTACGCTTAAATTGGATATGAGCAAAGCATATGGCAGGGTTGAGTGGTGCTTCCTTGAGCAAGTTATGTTACGCAAGGGTTTTGATGCTGCCTAG
Protein sequenceShow/hide protein sequence
MLNLAAATHRILTFIITRKTSRRYSPINYFARFPAKTEIKKLMWLSHDFSKNKKTEWNIKFYTPGPDGLSGSFFGSFWSLVGPYVVHSYLHVLNHNVSLGLLNDTLVTLI
PKTKMPRKLLEYQPISLCNVTYKQTSKAIINRFNGVLNLIIAPNQSTFILGHCVVDNAIMGYECLHSLKSHKMGRRGWATLKLDMSKAYGRVEWCFLEQVMLRKGFDAA