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Lag0026003 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026003
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTHO complex subunit 4D-like
Genome locationchr10:26687432..26689508
RNA-Seq ExpressionLag0026003
SyntenyLag0026003
Gene Ontology termsGO:0006406 - mRNA export from nucleus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7017929.1 THO complex subunit 4D [Cucurbita argyrosperma subsp. argyrosperma]5.5e-1578.12Show/hide
Query:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRS-KTVVLTS
        GS EVVYT RS+AFAALK YNNVL+DGKPM IEML DN + PVS RINVT VNGRS +TVVLTS
Subjt:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRS-KTVVLTS

XP_004145851.1 THO complex subunit 4D [Cucumis sativus]3.2e-1578.12Show/hide
Query:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRS-KTVVLTS
        GS EVVYT RS+AFAALK YNNVL+DGKPM IEML DN EMPVS RINVT  NGR+ +TVVLTS
Subjt:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRS-KTVVLTS

XP_022143379.1 THO complex subunit 4D-like [Momordica charantia]3.2e-1578.12Show/hide
Query:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRS-KTVVLTS
        GS EVVYT RS+AFAALK YNNVL+DGKPM IE+L DN EMPVS RINVT +NGRS +TVVLTS
Subjt:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRS-KTVVLTS

XP_022935328.1 THO complex subunit 4D-like [Cucurbita moschata]5.5e-1578.12Show/hide
Query:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRS-KTVVLTS
        GS EVVYT RS+AFAALK YNNVL+DGKPM IEML DN + PVS RINVT VNGRS +TVVLTS
Subjt:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRS-KTVVLTS

XP_038896761.1 THO complex subunit 4D-like [Benincasa hispida]3.2e-1579.37Show/hide
Query:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRS-KTVVLT
        GS EVVYT RS+AFAALK YNNVL+DG+PM IEML DN EMPVS RINVT VNGRS +TVVLT
Subjt:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRS-KTVVLT

TrEMBL top hitse value%identityAlignment
A0A0A0L717 RRM domain-containing protein4.1e-1658.82Show/hide
Query:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRSKTVVLTSVEVLKSLCLQGVFNALELVDFK
        GS EVVYT RS+AFAALK YNNVL+DGKPM IEML DN EMPVS RINVT  NGR++  V+ + + L  +   G F     ++FK
Subjt:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRSKTVVLTSVEVLKSLCLQGVFNALELVDFK

A0A5D3BPA9 THO complex subunit 4D3.5e-1576.92Show/hide
Query:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRS-KTVVLTSV
        GS EVVYT RS+AFAALK YNNVL+DGKPM IEML DN EMPVS RINVT  NGR+ +TVVLT V
Subjt:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRS-KTVVLTSV

A0A6J1CP51 THO complex subunit 4D-like1.6e-1578.12Show/hide
Query:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRS-KTVVLTS
        GS EVVYT RS+AFAALK YNNVL+DGKPM IE+L DN EMPVS RINVT +NGRS +TVVLTS
Subjt:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRS-KTVVLTS

A0A6J1FAB9 THO complex subunit 4D-like2.6e-1578.12Show/hide
Query:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRS-KTVVLTS
        GS EVVYT RS+AFAALK YNNVL+DGKPM IEML DN + PVS RINVT VNGRS +TVVLTS
Subjt:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRS-KTVVLTS

A0A6J1J564 THO complex subunit 4D-like2.6e-1578.12Show/hide
Query:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRS-KTVVLTS
        GS EVVYT RS+AFAALK YNNVL+DGKPM IEML DN + PVS RINVT VNGRS +TVVLTS
Subjt:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRS-KTVVLTS

SwissProt top hitse value%identityAlignment
Q6NQ72 THO complex subunit 4D6.1e-0955.38Show/hide
Query:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDN--VEMPVSTR--INVTEVNGRSKTVVL
        G+ EVVY  RS+AF ALK YNNVL+DG+PM +E+L  N   E P+S R  +NVT +NGR K  V+
Subjt:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDN--VEMPVSTR--INVTEVNGRSKTVVL

Q8L719 THO complex subunit 4B5.9e-0448.84Show/hide
Query:  QGSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMP
        +G+ EVV++ R +A AA+K YNNV +DGK M IE++  N+  P
Subjt:  QGSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMP

Q8L773 THO complex subunit 4A1.6e-0451.22Show/hide
Query:  QGSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVE
        +G+ EVVY+ R +A AA+K YN+V +DGKPM IE++  N++
Subjt:  QGSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVE

Q94EH8 THO complex subunit 4C5.5e-1055.74Show/hide
Query:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVE-MPVSTRINVTEVNGRSKTVV
        GS EVVY  RS+A  A++ YNNVL+DG+PM +E+L  N E  PV+ R+NVT +NGR K  V
Subjt:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVE-MPVSTRINVTEVNGRSKTVV

Arabidopsis top hitse value%identityAlignment
AT1G66260.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.9e-1155.74Show/hide
Query:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVE-MPVSTRINVTEVNGRSKTVV
        GS EVVY  RS+A  A++ YNNVL+DG+PM +E+L  N E  PV+ R+NVT +NGR K  V
Subjt:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVE-MPVSTRINVTEVNGRSKTVV

AT1G66260.2 RNA-binding (RRM/RBD/RNP motifs) family protein3.9e-1155.74Show/hide
Query:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVE-MPVSTRINVTEVNGRSKTVV
        GS EVVY  RS+A  A++ YNNVL+DG+PM +E+L  N E  PV+ R+NVT +NGR K  V
Subjt:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVE-MPVSTRINVTEVNGRSKTVV

AT5G37720.1 ALWAYS EARLY 44.3e-1055.38Show/hide
Query:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDN--VEMPVSTR--INVTEVNGRSKTVVL
        G+ EVVY  RS+AF ALK YNNVL+DG+PM +E+L  N   E P+S R  +NVT +NGR K  V+
Subjt:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDN--VEMPVSTR--INVTEVNGRSKTVVL

AT5G37720.2 ALWAYS EARLY 42.5e-1054.41Show/hide
Query:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDN--VEMPVSTR--INVTEVNGRSKTVVLTSV
        G+ EVVY  RS+AF ALK YNNVL+DG+PM +E+L  N   E P+S R  +NVT +NGR K  V+  V
Subjt:  GSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDN--VEMPVSTR--INVTEVNGRSKTVVLTSV

AT5G59950.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-0551.22Show/hide
Query:  QGSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVE
        +G+ EVVY+ R +A AA+K YN+V +DGKPM IE++  N++
Subjt:  QGSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAAGCTATGATTGTACAGGGCTCGATGGAGGTGGTATATACTCATAGAAGTAATGCATTTGCTGCTCTAAAGTGCTATAACAATGTTTTAGTGGATGGGAAGCC
AATGATGATTGAAATGCTTCGTGATAATGTTGAAATGCCAGTTTCTACACGTATAAATGTTACTGAAGTGAATGGAAGAAGTAAGACAGTTGTTCTAACAAGTGTTGAAG
TGTTGAAGAGTCTTTGTCTTCAAGGAGTGTTCAACGCTTTGGAACTTGTGGATTTCAAGGAGTCTTCAATGTTCAGGGAGTCTTCAGTCTTCAATATGGGTGGAGACTCT
CTGAATTCTCTGGTCCTTGTTGAGAACTTCAAAATTTTGAACCTCTTGTCTTTCGGAGAGTGTAGAGTTTCAGAACCCTTAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAAGCTATGATTGTACAGGGCTCGATGGAGGTGGTATATACTCATAGAAGTAATGCATTTGCTGCTCTAAAGTGCTATAACAATGTTTTAGTGGATGGGAAGCC
AATGATGATTGAAATGCTTCGTGATAATGTTGAAATGCCAGTTTCTACACGTATAAATGTTACTGAAGTGAATGGAAGAAGTAAGACAGTTGTTCTAACAAGTGTTGAAG
TGTTGAAGAGTCTTTGTCTTCAAGGAGTGTTCAACGCTTTGGAACTTGTGGATTTCAAGGAGTCTTCAATGTTCAGGGAGTCTTCAGTCTTCAATATGGGTGGAGACTCT
CTGAATTCTCTGGTCCTTGTTGAGAACTTCAAAATTTTGAACCTCTTGTCTTTCGGAGAGTGTAGAGTTTCAGAACCCTTAAAATGA
Protein sequenceShow/hide protein sequence
MTEAMIVQGSMEVVYTHRSNAFAALKCYNNVLVDGKPMMIEMLRDNVEMPVSTRINVTEVNGRSKTVVLTSVEVLKSLCLQGVFNALELVDFKESSMFRESSVFNMGGDS
LNSLVLVENFKILNLLSFGECRVSEPLK