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Lag0026005 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026005
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr10:26734256..26734582
RNA-Seq ExpressionLag0026005
SyntenyLag0026005
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4320655.1 unnamed protein product [Prunus armeniaca]4.7e-0669.23Show/hide
Query:  MNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETKS
        M ILCWNVRGLGNPRT RALR  +R   P+I+F+SETK+
Subjt:  MNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETKS

KAA3485548.1 reverse transcriptase [Gossypium australe]3.1e-0563.16Show/hide
Query:  MNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETK
        M  +CWNVRGLGNPR IR LRH ++  NPQ +F+ ETK
Subjt:  MNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETK

KAG8482089.1 hypothetical protein CXB51_027072 [Gossypium anomalum]1.1e-0571.79Show/hide
Query:  TMNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETK
        TM IL WNVRGLG PRTIR LRH ++  NPQIVF  ETK
Subjt:  TMNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETK

XP_030922943.1 uncharacterized protein LOC115949807 [Quercus lobata]2.4e-0565Show/hide
Query:  MNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETKSQ
        MN LCWN +G+GNPRT+ ALR  +R  NP+IVF+SETKS+
Subjt:  MNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETKSQ

XP_030949962.1 uncharacterized protein LOC115973864 [Quercus lobata]2.4e-0544.93Show/hide
Query:  SKKQKKDHLYSRVNGGISTEVGS---QSHHTMNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETK
        +K QKK H   +     + E  +   +    MN LCWN RG+GNPRT+ ALR  +R  NP++VF+SETK
Subjt:  SKKQKKDHLYSRVNGGISTEVGS---QSHHTMNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETK

TrEMBL top hitse value%identityAlignment
A0A1U8HV94 uncharacterized protein LOC1078899121.9e-0568.42Show/hide
Query:  MNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETK
        M IL WNVRGLGNPRT+  LRH ++  NPQIVF  ETK
Subjt:  MNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETK

A0A5B6V0I7 Reverse transcriptase1.5e-0565.79Show/hide
Query:  MNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETK
        M IL WNVRGLGNPR +R LRH ++  NPQ+VF  ETK
Subjt:  MNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETK

A0A5B6WVT7 Reverse transcriptase1.5e-0563.16Show/hide
Query:  MNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETK
        M  +CWNVRGLGNPR IR LRH ++  NPQ +F+ ETK
Subjt:  MNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETK

A0A5B6X3R5 Reverse transcriptase1.9e-0565.79Show/hide
Query:  MNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETK
        M IL WNVRGLGNPR +R LRH ++  NPQ+VF  ETK
Subjt:  MNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETK

A0A6J5Y9R2 Endo/exonuclease/phosphatase domain-containing protein2.3e-0669.23Show/hide
Query:  MNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETKS
        M ILCWNVRGLGNPRT RALR  +R   P+I+F+SETK+
Subjt:  MNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCGAATTGGATCCTCTCAAAAAGGGAATGAAGTGTTGGAAGTTAGGGACAGAGATGGAAACAGAAAAGCTGAGGAAGAAAGTACTGAAGACAGCAAGAAGCAAAA
GAAAGACCATCTTTACTCTAGAGTTAATGGAGGGATATCGACGGAGGTTGGAAGCCAATCCCACCACACCATGAATATCCTATGCTGGAACGTTCGAGGGTTGGGGAACC
CTCGAACGATCCGAGCGCTTCGCCATGAGGTCAGAAGCATAAATCCCCAAATTGTTTTTATGTCTGAAACAAAAAGCCAAGCAAGCAGTGATAGCGAGCATAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCCGAATTGGATCCTCTCAAAAAGGGAATGAAGTGTTGGAAGTTAGGGACAGAGATGGAAACAGAAAAGCTGAGGAAGAAAGTACTGAAGACAGCAAGAAGCAAAA
GAAAGACCATCTTTACTCTAGAGTTAATGGAGGGATATCGACGGAGGTTGGAAGCCAATCCCACCACACCATGAATATCCTATGCTGGAACGTTCGAGGGTTGGGGAACC
CTCGAACGATCCGAGCGCTTCGCCATGAGGTCAGAAGCATAAATCCCCAAATTGTTTTTATGTCTGAAACAAAAAGCCAAGCAAGCAGTGATAGCGAGCATAGCTAG
Protein sequenceShow/hide protein sequence
MARIGSSQKGNEVLEVRDRDGNRKAEEESTEDSKKQKKDHLYSRVNGGISTEVGSQSHHTMNILCWNVRGLGNPRTIRALRHEVRSINPQIVFMSETKSQASSDSEHS