CuGenDBv2

Gene ID	Lag0026007
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Gag/pol protein
Genome location	chr10:26775224..26779116
RNA-Seq Expression	Lag0026007
Synteny	Lag0026007
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

2.3e-52

90.68

Show/hide

Query:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL
        I DSTMEAEYVA CEAAKEAVWLRKFL DLEVVPNMN+PITLYCDNSGAV NSKEPRSHKRGKHI+RKYHLIREIVQRGDVIVTKIASEH IA PFTK L
Subjt:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL

Query:  TAKVFEGHLEGLGLRDMH
        TAKVFEGHLE LGLRDM+
Subjt:  TAKVFEGHLEGLGLRDMH

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]

5.0e-52

89.83

Show/hide

Query:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL
        I DSTMEAEYVA CEAAKEAVWL+KFL DLEVVPNMN+PITLYCDNSGAV NSKEPRSHKRGKHI+RKYHLIREIVQRGDVIVTKIASEH IA PFTK L
Subjt:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL

Query:  TAKVFEGHLEGLGLRDMH
        TAKVFEGHLE LGLRDM+
Subjt:  TAKVFEGHLEGLGLRDMH

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]

2.3e-52

90.68

Show/hide

Query:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL
        I DSTMEAEYVA CEAAKEAVWLRKFL DLEVVPNMN+PITLYCDNSGAV NSKEPRSHKRGKHI+RKYHLIREIVQRGDVIVTKIASEH IA PFTK L
Subjt:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL

Query:  TAKVFEGHLEGLGLRDMH
        TAKVFEGHLE LGLRDM+
Subjt:  TAKVFEGHLEGLGLRDMH

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]

2.3e-52

90.68

Show/hide

Query:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL
        I DSTMEAEYVA CEAAKEAVWLRKFL DLEVVPNMN+PITLYCDNSGAV NSKEPRSHKRGKHI+RKYHLIREIVQRGDVIVTKIASEH IA PFTK L
Subjt:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL

Query:  TAKVFEGHLEGLGLRDMH
        TAKVFEGHLE LGLRDM+
Subjt:  TAKVFEGHLEGLGLRDMH

KAA0061170.1 gag/pol protein [Cucumis melo var. makuwa]

2.9e-52

90.68

Show/hide

Query:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL
        I DSTMEAEYVA CEAAKEAVWLRKFL DLEVVPNMN+PITLYCDNSGAV NSKEPRSHKRGKHI+RKYHLIREIVQRGDVIVTKIASEH IA PFTK L
Subjt:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL

Query:  TAKVFEGHLEGLGLRDMH
        TAKVFEGHLE LGLRDM+
Subjt:  TAKVFEGHLEGLGLRDMH

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T2V9 Gag/pol protein

2.4e-52

89.83

Show/hide

Query:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL
        I DSTMEAEYVA CEAAKEAVWL+KFL DLEVVPNMN+PITLYCDNSGAV NSKEPRSHKRGKHI+RKYHLIREIVQRGDVIVTKIASEH IA PFTK L
Subjt:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL

Query:  TAKVFEGHLEGLGLRDMH
        TAKVFEGHLE LGLRDM+
Subjt:  TAKVFEGHLEGLGLRDMH

A0A5A7TKM4 Gag/pol protein

1.1e-52

90.68

Show/hide

Query:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL
        I DSTMEAEYVA CEAAKEAVWLRKFL DLEVVPNMN+PITLYCDNSGAV NSKEPRSHKRGKHI+RKYHLIREIVQRGDVIVTKIASEH IA PFTK L
Subjt:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL

Query:  TAKVFEGHLEGLGLRDMH
        TAKVFEGHLE LGLRDM+
Subjt:  TAKVFEGHLEGLGLRDMH

A0A5A7TZD0 Gag/pol protein

1.1e-52

90.68

Show/hide

Query:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL
        I DSTMEAEYVA CEAAKEAVWLRKFL DLEVVPNMN+PITLYCDNSGAV NSKEPRSHKRGKHI+RKYHLIREIVQRGDVIVTKIASEH IA PFTK L
Subjt:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL

Query:  TAKVFEGHLEGLGLRDMH
        TAKVFEGHLE LGLRDM+
Subjt:  TAKVFEGHLEGLGLRDMH

A0A5A7UYE8 Gag/pol protein

1.1e-52

90.68

Show/hide

Query:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL
        I DSTMEAEYVA CEAAKEAVWLRKFL DLEVVPNMN+PITLYCDNSGAV NSKEPRSHKRGKHI+RKYHLIREIVQRGDVIVTKIASEH IA PFTK L
Subjt:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL

Query:  TAKVFEGHLEGLGLRDMH
        TAKVFEGHLE LGLRDM+
Subjt:  TAKVFEGHLEGLGLRDMH

A0A5A7V1F5 Gag/pol protein

1.4e-52

90.68

Show/hide

Query:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL
        I DSTMEAEYVA CEAAKEAVWLRKFL DLEVVPNMN+PITLYCDNSGAV NSKEPRSHKRGKHI+RKYHLIREIVQRGDVIVTKIASEH IA PFTK L
Subjt:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKAL

Query:  TAKVFEGHLEGLGLRDMH
        TAKVFEGHLE LGLRDM+
Subjt:  TAKVFEGHLEGLGLRDMH

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

2.5e-14

41.44

Show/hide

Query:  STMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKALTAK
        S+ EAEY+A  EA +EA+WL+  LT + +   +  PI +Y DN G +  +  P  HKR KHI  KYH  RE VQ   + +  I +E+ +A  FTK L A 
Subjt:  STMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKALTAK

Query:  VFEGHLEGLGL
         F    + LGL
Subjt:  VFEGHLEGLGL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.0e-12

36.03

Show/hide

Query:  FLFADACGRSSEESSPRRLDLRIEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQR
        +LF  + G  S +S   +L   +  ST EAEY+A  E  KE +WL++FL +L +     V   +YCD+  A+  SK    H R KHI  +YH IRE+V  
Subjt:  FLFADACGRSSEESSPRRLDLRIEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQR

Query:  GDVIVTKIASEHIIAYPFTKALTAKVFEGHLEGLGL
          + V KI++    A   TK +    FE   E +G+
Subjt:  GDVIVTKIASEHIIAYPFTKALTAKVFEGHLEGLGL

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

3.4e-06

35.14

Show/hide

Query:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIRE
        +  S+ EAEY A   A  E +WL +F  +L++   ++ P  L+CDN+ A+  +     H+R KHI+   H +RE
Subjt:  IEDSTMEAEYVATCEAAKEAVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIRE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGAAGAAGATGCACAGTTGGCCGAGCAAGGAGATCGGGGATGGAATGAACGCGAGGAAGGAGGAAGAGAGGGAGTCGTCGTCCCTGCCGTCGGAGTCTACTCGCCA
ATCGAGACCTCGTCGGAGAAGAAAACTACCAGGAGGAGGTGGTGGCTCATATCTTATACGCCGCTTTGCACTACAAGAATTTTTAGCTGAGCCCACATTTCTTTTCGCCG
ATGCATGTGGAAGGAGTAGTGAAGAATCGTCACCTCGAAGGTTAGATCTAAGAATTGAAGACTCAACCATGGAGGCTGAGTATGTAGCAACTTGTGAAGCAGCTAAGGAG
GCAGTATGGCTTAGAAAGTTCTTGACTGATTTGGAAGTGGTTCCGAATATGAACGTGCCCATAACACTATACTGTGACAACAGTGGGGCTGTAGTCAACTCAAAAGAACC
TCGAAGCCACAAACGGGGTAAACACATCAAGAGGAAGTATCACCTGATACGGGAGATTGTGCAACGAGGAGATGTGATCGTCACTAAGATCGCCTCGGAGCACATCATCG
CTTATCCATTTACGAAGGCTCTCACGGCTAAAGTGTTTGAGGGTCATCTAGAGGGTCTAGGTCTACGAGATATGCATGCCATCTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKKKMHSWPSKEIGDGMNARKEEERESSSLPSESTRQSRPRRRRKLPGGGGGSYLIRRFALQEFLAEPTFLFADACGRSSEESSPRRLDLRIEDSTMEAEYVATCEAAKE
AVWLRKFLTDLEVVPNMNVPITLYCDNSGAVVNSKEPRSHKRGKHIKRKYHLIREIVQRGDVIVTKIASEHIIAYPFTKALTAKVFEGHLEGLGLRDMHAI

Lag0026007 (gene) of Sponge gourd (AG-4) v1 genome