CuGenDBv2

Gene ID	Lag0026039
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Ribonuclease H-like superfamily protein
Genome location	chr10:27641831..27643354
RNA-Seq Expression	Lag0026039
Synteny	Lag0026039
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR026960 - Reverse transcriptase zinc-binding domain IPR036397 - Ribonuclease H superfamily IPR044730 - Ribonuclease H-like domain, plant type

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ONI01138.1 hypothetical protein PRUPE_6G123900 [Prunus persica]

9.8e-78

38.3

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Query:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS
        GG+ FR+L  FNQ+LLAKQCWRIL  P SL++ + R RY PS  FL A  G N SFIWRSL WGKELL KGLRWRVGSG SIQ+Y D WLP     KI S
Subjt:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS

Query:  RPLRPDLRRVSDLISASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVA-QQVDLLHDPSSSSLEGTISWWNRVWKLSI
         P  P   RV DL ++SGQW+  LLK  F  +E   I  IPL      D LIWHYE+ G ++VKSGYR+A  + D +    S+ ++    +W ++W L I
Subjt:  RPLRPDLRRVSDLISASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVA-QQVDLLHDPSSSSLEGTISWWNRVWKLSI

Query:  PSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRS---KVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVII
        P+KI+ FLWR   + LP    L  R +    +C +C    E +LH VW C+  + +W  S    V  +W      ++   L+         +F     + 
Subjt:  PSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRS---KVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVII

Query:  WGMWSARNC-ILQGQSIAADDLLQWATTYLQSYQAAQQ-----SGHRLPPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRP
        WG+W+ RN  I +G+S  A  LL   T   Q +  A        G +  P   +  W PPP          A      +   G+V+R+ +G  + A +R 
Subjt:  WGMWSARNC-ILQGQSIAADDLLQWATTYLQSYQAAQQ-----SGHRLPPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRP

Query:  LHCCLNVDLAEGRAVVEGFWTAMNLGFSKLEVEVDS
        +H        E  A +EG   A+++GF+   +E+D+
Subjt:  LHCCLNVDLAEGRAVVEGFWTAMNLGFSKLEVEVDS

VVA32947.1 PREDICTED: retrotransposon [Prunus dulcis]

6.1e-80

38.3

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Query:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS
        GG+ FR+L  FNQ+LLAKQCWRIL  P SL++ + R RY PS  FL A  G N SFIWRSL WGKELL KGLRWRVG+G SIQ+Y D WLP     KI S
Subjt:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS

Query:  RPLRPDLRRVSDLISASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVA-QQVDLLHDPSSSSLEGTISWWNRVWKLSI
         P  P    V DL ++SGQW+  LLK  F  +E      IPL      D LIWHYE+ G ++VKSGYR+A  + D +    S  ++    +W ++W L I
Subjt:  RPLRPDLRRVSDLISASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVA-QQVDLLHDPSSSSLEGTISWWNRVWKLSI

Query:  PSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRS---KVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVII
        P+KI+ FLWR   + LP    L  R +    +C  C    E +LH VW C+  + +W  S    V   W      ++   L+         +F     + 
Subjt:  PSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRS---KVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVII

Query:  WGMWSARNC-ILQGQSIAADDLLQWATTYLQSYQAAQQSGHRL-----PPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRP
        WG+W+ RN  I +G+S  A  LL   T   Q +  A    H +      P   +  W PPP+G+ K+N D A      +   G+V+R+ +G  + A +R 
Subjt:  WGMWSARNC-ILQGQSIAADDLLQWATTYLQSYQAAQQSGHRL-----PPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRP

Query:  LHCCLNVDLAEGRAVVEGFWTAMNLGFSKLEVEVDS
        +         E  A +EG   A+++GF+   +E+D+
Subjt:  LHCCLNVDLAEGRAVVEGFWTAMNLGFSKLEVEVDS

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]

2.0e-99

44.47

Show/hide

Query:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS
        GGM FR+L LFN++LLAKQCWRIL+ P S+LS VL+GRYF  C F+ A+   N S+IWRS+LWG++LL KGLRWR+G+G S+ IY DNW+P    LKI S
Subjt:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS

Query:  RPLRPDLRRVSDLIS-ASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVA-QQVDLLHDPSSSSLEGTISWWNRVWKLS
         P  P + RVS L+    G W  D+++  F  +EA+ I +IP+G   E D+LIW+YEK G ++V+SGY+VA      +  PSSSS E    WWN  WK+ 
Subjt:  RPLRPDLRRVSDLIS-ASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVA-QQVDLLHDPSSSSLEGTISWWNRVWKLS

Query:  IPSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSKVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVIIWG
        IP+KI++FLWRLCL++LPT  NL  RG++I N C  CG  GED +H+ W CK    LW  SK        G      +LR  ++++  A FEE+ V+IWG
Subjt:  IPSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSKVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVIIWG

Query:  MWSARNCILQGQSI-----AADDLLQWATTYLQSYQAAQQS--GHRLPPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRPL
        +W+ RN      S         +L++WA  Y   ++ A+ +    R+     I+ W PP  G+ K+NTDA+F  S   A  G++I +D G V+ A  + L
Subjt:  MWSARNCILQGQSI-----AADDLLQWATTYLQSYQAAQQS--GHRLPPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRPL

Query:  HCCLNVDLAEGRAVVEGFWTAMNLG
            +VD+AE  A VEG   A  +G
Subjt:  HCCLNVDLAEGRAVVEGFWTAMNLG

XP_024037590.1 uncharacterized protein LOC112097210 [Citrus clementina]

6.6e-74

35.54

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Query:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS
        GGM FR+L+ FNQ+L+AKQ WRI+  P+SL++ VL+ RYF   GF+ A  G   SF+WRS++WG+++L KG RWR+G+G ++ +Y +NW+PR    K  S
Subjt:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS

Query:  RPLRPDLRRVSDLISASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVAQQVDLLHDPSSSSLEGTISWWNRVWKLSIP
         P       V++LI    QW  DL+ Q+F  E+A  I  IPL    + DQLIWHY+K G ++VKSGY+VA ++    DPS S+ +  +  W  +WKL+IP
Subjt:  RPLRPDLRRVSDLISASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVAQQVDLLHDPSSSSLEGTISWWNRVWKLSIP

Query:  SKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSKVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVIIWGMW
         K++IFLWR   + LPT  NL  + +    +C  C    E + H +  C   R +W  S ++         DI+ +L++           EV  ++W +W
Subjt:  SKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSKVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVIIWGMW

Query:  SARN-CILQGQSIAADDLLQWATTYLQSYQAAQQSGHRLPPIRSIVR---WVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRPLHCCLN
         ARN  + +G+      ++  A   ++S++  +Q         +  R   W PPP+G  K+N DAA      +A  G+V+RD  G    A I+ L    +
Subjt:  SARN-CILQGQSIAADDLLQWATTYLQSYQAAQQSGHRLPPIRSIVR---WVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRPLHCCLN

Query:  VDLAEGRAVVEGFWTAMNLGFSKLEVEVDSMRVYDFCSR
        V +AE  A+  G   A     +    E DS+ V D  ++
Subjt:  VDLAEGRAVVEGFWTAMNLGFSKLEVEVDSMRVYDFCSR

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]

3.4e-78

36.73

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Query:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS
        GG+ FR  + FNQ+L+AKQ WR+L  P SL+S VL+ RYF +  FL A+AG N+S+IWRS++WG++++ KG+RWR+G+G  I I+ DNWLPR    +   
Subjt:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS

Query:  RPLRPDLRRVSDLISASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVAQQVDLLHDPSSSSLEGTISWWNRVWKLSIP
            P    V+DLI A  QWD   L+Q+F   +   I  IPL   +  D+++WHY+K G ++VKSGY++A +       S+S  E +  +W+ +W L +P
Subjt:  RPLRPDLRRVSDLISASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVAQQVDLLHDPSSSSLEGTISWWNRVWKLSIP

Query:  SKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSKVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVIIWGMW
         K++IF+WR   N LP+  NL  R +     C RC    E I H +  CK  R +W +S  S       S DI + L+ +   +  +  E +V + W  W
Subjt:  SKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSKVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVIIWGMW

Query:  SARN-CILQGQS---IAADDLLQWATTYLQSYQAAQQSGHRLPPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRPLHCCLN
         ARN CI  G+    I +    +   T  Q  +  QQS   +        W+PPP  + K+N DAAF+     A  G VIRD +G ++ AG+       +
Subjt:  SARN-CILQGQS---IAADDLLQWATTYLQSYQAAQQSGHRLPPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRPLHCCLN

Query:  VDLAEGRAVVEGFWTAMNLGFSKLEVEVDSMRVYDFCSRTR
          LAE  AV+ G   A N   S L +E D + V    + T+
Subjt:  VDLAEGRAVVEGFWTAMNLGFSKLEVEVDSMRVYDFCSRTR

TrEMBL top hits

e value

%identity

Alignment

A0A1S8ACU2 Ribonuclease H-like superfamily protein

9.6e-79

34.78

Show/hide

Query:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS
        GG+ FR++  FNQ+L+AKQ WRI+  P SL++ +L+ +YF    FL A+ G   SF+WRS++WG+++++ G+RWR+G+G  ++IY  +W+PR +  K  S
Subjt:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS

Query:  RPLRPDLRRVSDLISASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVAQQVDLLHDPSSSSLEGTISWWNRVWKLSIP
         P       V++LI  + +W   L++Q+F++E+A LIS I L +S + DQ++WHY+K G ++VKSGY++A ++     PSSSS    +  WN +W L +P
Subjt:  RPLRPDLRRVSDLISASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVAQQVDLLHDPSSSSLEGTISWWNRVWKLSIP

Query:  SKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSKVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVIIWGMW
         KI+IF+W+   N LPT  NL  R M    +C RC    EDI H +  CK  + +W  +          + D++++L+ L +         ++ + W  W
Subjt:  SKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSKVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVIIWGMW

Query:  SARNCIL-----QGQSIAADDLLQWATTYLQSYQAAQQSGHRLPPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRPLHCCL
          RN  +     Q   I+         +Y +      Q+  +  P +   +W+PPP G  K N DAA +        G+VIRDDSGA+++A +       
Subjt:  SARNCIL-----QGQSIAADDLLQWATTYLQSYQAAQQSGHRLPPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRPLHCCL

Query:  NVDLAEGRAVVEGFWTAMNLGFSKLEVEVDSMRVYDF
        +V  AE  AV  G    M    S L +E D   V DF
Subjt:  NVDLAEGRAVVEGFWTAMNLGFSKLEVEVDSMRVYDF

A0A251NPF0 Reverse transcriptase domain-containing protein

4.7e-78

38.3

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Query:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS
        GG+ FR+L  FNQ+LLAKQCWRIL  P SL++ + R RY PS  FL A  G N SFIWRSL WGKELL KGLRWRVGSG SIQ+Y D WLP     KI S
Subjt:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS

Query:  RPLRPDLRRVSDLISASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVA-QQVDLLHDPSSSSLEGTISWWNRVWKLSI
         P  P   RV DL ++SGQW+  LLK  F  +E   I  IPL      D LIWHYE+ G ++VKSGYR+A  + D +    S+ ++    +W ++W L I
Subjt:  RPLRPDLRRVSDLISASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVA-QQVDLLHDPSSSSLEGTISWWNRVWKLSI

Query:  PSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRS---KVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVII
        P+KI+ FLWR   + LP    L  R +    +C +C    E +LH VW C+  + +W  S    V  +W      ++   L+         +F     + 
Subjt:  PSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRS---KVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVII

Query:  WGMWSARNC-ILQGQSIAADDLLQWATTYLQSYQAAQQ-----SGHRLPPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRP
        WG+W+ RN  I +G+S  A  LL   T   Q +  A        G +  P   +  W PPP          A      +   G+V+R+ +G  + A +R 
Subjt:  WGMWSARNC-ILQGQSIAADDLLQWATTYLQSYQAAQQ-----SGHRLPPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRP

Query:  LHCCLNVDLAEGRAVVEGFWTAMNLGFSKLEVEVDS
        +H        E  A +EG   A+++GF+   +E+D+
Subjt:  LHCCLNVDLAEGRAVVEGFWTAMNLGFSKLEVEVDS

A0A5E4FZN9 PREDICTED: retrotransposon

3.0e-80

38.3

Show/hide

Query:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS
        GG+ FR+L  FNQ+LLAKQCWRIL  P SL++ + R RY PS  FL A  G N SFIWRSL WGKELL KGLRWRVG+G SIQ+Y D WLP     KI S
Subjt:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS

Query:  RPLRPDLRRVSDLISASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVA-QQVDLLHDPSSSSLEGTISWWNRVWKLSI
         P  P    V DL ++SGQW+  LLK  F  +E      IPL      D LIWHYE+ G ++VKSGYR+A  + D +    S  ++    +W ++W L I
Subjt:  RPLRPDLRRVSDLISASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVA-QQVDLLHDPSSSSLEGTISWWNRVWKLSI

Query:  PSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRS---KVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVII
        P+KI+ FLWR   + LP    L  R +    +C  C    E +LH VW C+  + +W  S    V   W      ++   L+         +F     + 
Subjt:  PSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRS---KVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVII

Query:  WGMWSARNC-ILQGQSIAADDLLQWATTYLQSYQAAQQSGHRL-----PPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRP
        WG+W+ RN  I +G+S  A  LL   T   Q +  A    H +      P   +  W PPP+G+ K+N D A      +   G+V+R+ +G  + A +R 
Subjt:  WGMWSARNC-ILQGQSIAADDLLQWATTYLQSYQAAQQSGHRL-----PPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRP

Query:  LHCCLNVDLAEGRAVVEGFWTAMNLGFSKLEVEVDS
        +         E  A +EG   A+++GF+   +E+D+
Subjt:  LHCCLNVDLAEGRAVVEGFWTAMNLGFSKLEVEVDS

A0A6J1DAR4 uncharacterized protein LOC111018954

9.8e-100

44.47

Show/hide

Query:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS
        GGM FR+L LFN++LLAKQCWRIL+ P S+LS VL+GRYF  C F+ A+   N S+IWRS+LWG++LL KGLRWR+G+G S+ IY DNW+P    LKI S
Subjt:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS

Query:  RPLRPDLRRVSDLIS-ASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVA-QQVDLLHDPSSSSLEGTISWWNRVWKLS
         P  P + RVS L+    G W  D+++  F  +EA+ I +IP+G   E D+LIW+YEK G ++V+SGY+VA      +  PSSSS E    WWN  WK+ 
Subjt:  RPLRPDLRRVSDLIS-ASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVA-QQVDLLHDPSSSSLEGTISWWNRVWKLS

Query:  IPSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSKVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVIIWG
        IP+KI++FLWRLCL++LPT  NL  RG++I N C  CG  GED +H+ W CK    LW  SK        G      +LR  ++++  A FEE+ V+IWG
Subjt:  IPSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSKVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVIIWG

Query:  MWSARNCILQGQSI-----AADDLLQWATTYLQSYQAAQQS--GHRLPPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRPL
        +W+ RN      S         +L++WA  Y   ++ A+ +    R+     I+ W PP  G+ K+NTDA+F  S   A  G++I +D G V+ A  + L
Subjt:  MWSARNCILQGQSI-----AADDLLQWATTYLQSYQAAQQS--GHRLPPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRPL

Query:  HCCLNVDLAEGRAVVEGFWTAMNLG
            +VD+AE  A VEG   A  +G
Subjt:  HCCLNVDLAEGRAVVEGFWTAMNLG

M5W5F3 Reverse transcriptase domain-containing protein (Fragment)

4.7e-78

38.3

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Query:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS
        GG+ FR+L  FNQ+LLAKQCWRIL  P SL++ + R RY PS  FL A  G N SFIWRSL WGKELL KGLRWRVGSG SIQ+Y D WLP     KI S
Subjt:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQS

Query:  RPLRPDLRRVSDLISASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVA-QQVDLLHDPSSSSLEGTISWWNRVWKLSI
         P  P   RV DL ++SGQW+  LLK  F  +E   I  IPL      D LIWHYE+ G ++VKSGYR+A  + D +    S+ ++    +W ++W L I
Subjt:  RPLRPDLRRVSDLISASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVA-QQVDLLHDPSSSSLEGTISWWNRVWKLSI

Query:  PSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRS---KVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVII
        P+KI+ FLWR   + LP    L  R +    +C +C    E +LH VW C+  + +W  S    V  +W      ++   L+         +F     + 
Subjt:  PSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRS---KVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVII

Query:  WGMWSARNC-ILQGQSIAADDLLQWATTYLQSYQAAQQ-----SGHRLPPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRP
        WG+W+ RN  I +G+S  A  LL   T   Q +  A        G +  P   +  W PPP          A      +   G+V+R+ +G  + A +R 
Subjt:  WGMWSARNC-ILQGQSIAADDLLQWATTYLQSYQAAQQ-----SGHRLPPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRP

Query:  LHCCLNVDLAEGRAVVEGFWTAMNLGFSKLEVEVDS
        +H        E  A +EG   A+++GF+   +E+D+
Subjt:  LHCCLNVDLAEGRAVVEGFWTAMNLGFSKLEVEVDS

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

1.3e-35

27.52

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Query:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSF--IWRSLLWG-KELLMKGLRWRVGSGASIQIYDDNWLPRDRLLK
        GG+  R     N++L++K  WR+L +  SL + VL+ +Y            P  S+   WRS+  G ++++  G+ W  G G  I+ + D W+    LL+
Subjt:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSF--IWRSLLWG-KELLMKGLRWRVGSGASIQIYDDNWLPRDRLLK

Query:  IQS--RPLRPDLRRVSDLISASGQWDHDLLKQNFDYEEARLISAIPLGLSREA-DQLIWHYEKFGRFTVKSGYRVAQQVDLLHDPSSSSLEGTISWWNRV
        + +  RP   D     DL      WD   +           + A+ L L   A D+L W + + G+F+V+S Y +   VD +  P+ +      S++N +
Subjt:  IQS--RPLRPDLRRVSDLISASGQWDHDLLKQNFDYEEARLISAIPLGLSREA-DQLIWHYEKFGRFTVKSGYRVAQQVDLLHDPSSSSLEGTISWWNRV

Query:  WKLSIPSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSKVSHLWHSGGSSDIMALLRYLYDNV-------PVA
        WK+ +P +++ FLW +    + T      R +   N+C  C    E +LHV+  C    G+W R  V      G  S   +L  +LYDN+        + 
Subjt:  WKLSIPSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSKVSHLWHSGGSSDIMALLRYLYDNV-------PVA

Query:  VFEEVVVIIWGMWSARNCILQGQSIAADD----LLQWATTYLQSYQAAQQSGHRLPPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAV
              VIIW  W  R   + G++    D    + +WA    +++      G   P +  ++ WV P  G VK+NTD A   + GLA+AG V+RD +GA 
Subjt:  VFEEVVVIIWGMWSARNCILQGQSIAADD----LLQWATTYLQSYQAAQQSGHRLPPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAV

Query:  LMAGIRPLHCCLNVDLAEGRAVVEGFWTAMNLGFSKLEVEVDSMRVYDFCSRTRRIFQSWVAFLRRCLVVILQEIW
               +  C +   AE   V  G + A      ++E+EVDS  +  F  +T       ++FL R     LQ+ W
Subjt:  LMAGIRPLHCCLNVDLAEGRAVVEGFWTAMNLGFSKLEVEVDSMRVYDFCSRTRRIFQSWVAFLRRCLVVILQEIW

P93295 Uncharacterized mitochondrial protein AtMg00310

2.6e-17

44.44

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Query:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWL
        GG+ FR+L  FNQ+LLAKQ +RI+  P +LLS +LR RYFP    +    G   S+ WRS++ G+ELL +GL   +G G   +++ D W+
Subjt:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWL

Arabidopsis top hits

e value

%identity

Alignment

AT2G02650.1 Ribonuclease H-like superfamily protein

1.3e-19

26.97

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Query:  VKSGYRVAQQVDLLHDPSSSSLEGTISWWNRVWKLSIPSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSK--
        ++SGY VA   DLL + +     G+      +WKL +  KI+ FLWR     L T   L  R +D   +C RC    E I H+++ C + + +W  +   
Subjt:  VKSGYRVAQQVDLLHDPSSSSLEGTISWWNRVWKLSIPSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSK--

Query:  VSHLWHSGGS-SDIMALLRYLYDNVPVAVFEEVVV--IIWGMWSARNCILQGQSIAADDL-----LQWATTYLQSYQAAQQSGHRLP--PI----RSIVR
        + + W    S  D +  L  L         +  +   I+W +W +RN  L  Q   + D      +Q AT +L + +  + +   +   PI    R   +
Subjt:  VSHLWHSGGS-SDIMALLRYLYDNVPVAVFEEVVV--IIWGMWSARNCILQGQSIAADDL-----LQWATTYLQSYQAAQQSGHRLP--PI----RSIVR

Query:  WVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAG
        W PPP G VK N D+ ++  +    +G  IR+ +G +++ G
Subjt:  WVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAG

AT3G09510.1 Ribonuclease H-like superfamily protein

3.1e-37

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Query:  LRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQSRPLRP-------DLRRVSDLISASGQ---WDHDL
        ++ RYF     L A+     S+ W SLL G  LL KG R  +G G +I+I  DN         + S P RP           +++L    G    WD   
Subjt:  LRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQSRPLRP-------DLRRVSDLISASGQ---WDHDL

Query:  LKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVAQQVDLLHDPSS-----SSLEGTISWWNRVWKLSIPSKIRIFLWRLCLNKLPTRA
        + Q  D  +   I  I L  S++ D++IW+Y   G +TV+SGY +     L HDPS+     +   G+I    R+W L I  K++ FLWR     L T  
Subjt:  LKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVAQQVDLLHDPSS-----SSLEGTISWWNRVWKLSIPSKIRIFLWRLCLNKLPTRA

Query:  NLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSKVSHLWHSGGSSD----IMALLRYLYDNVPVAVFEEV--VVIIWGMWSARNCILQG---Q
         L  RGM I   C RC    E I H ++ C      W  S  S + +   S+D    I  +L ++ D   ++ F ++  V +IW +W ARN ++     +
Subjt:  NLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSKVSHLWHSGGSSD----IMALLRYLYDNVPVAVFEEV--VVIIWGMWSARNCILQG---Q

Query:  SIAADDLLQWATTYLQSYQAAQQSGHRLP-PIRSI----VRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRPLHCCLNVDLAEGRAV
        S +   L   A T+   +  A QS  + P P R I    + W  PP+  VK N DA F      A  G +IR+  G  +  G   L    N   AE +A+
Subjt:  SIAADDLLQWATTYLQSYQAAQQSGHRLP-PIRSI----VRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRPLHCCLNVDLAEGRAV

Query:  VEGFWTAMNLGFSKLEVEVD
        +         G++++ +E D
Subjt:  VEGFWTAMNLGFSKLEVEVD

AT3G25270.1 Ribonuclease H-like superfamily protein

4.5e-20

27.34

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Query:  DPSSSSLEGTISWWNRVWKLSIPSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSKVSH--LWHSGGSSD--I
        DP      G      ++WKL    KI+ FLW+L    L T  NL  R +     C RC    E   H+ + C + + +W  S + H  L  +G + +  +
Subjt:  DPSSSSLEGTISWWNRVWKLSIPSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSKVSH--LWHSGGSSD--I

Query:  MALLRYLYDNVPVAVFEEVVVIIWGMWSARN-CILQGQSI--------AADDLLQW--ATTYLQSYQAAQQSGHRLPPIRSIVRWVPPPSGMVKLNTDAA
          LL     N    +F   + I+W +W +RN  + Q +SI        A +D+ +W    TY+QS      S     P  +  +W  PPS  +K N D A
Subjt:  MALLRYLYDNVPVAVFEEVVVIIWGMWSARN-CILQGQSI--------AADDLLQW--ATTYLQSYQAAQQSGHRLPPIRSIVRWVPPPSGMVKLNTDAA

Query:  FSPSTGLAAAGMVIRDDSGAVLMAGIRPLHCCLNVDLAEGRAVVEGFWTAMNLGFSKLEVEVDSMRVYDFCSRTRRIF
        F+  T  A AG ++RD++G  + +G        +   +E +A++     A + G+ K+  E DS +V +  +  +  F
Subjt:  FSPSTGLAAAGMVIRDDSGAVLMAGIRPLHCCLNVDLAEGRAVVEGFWTAMNLGFSKLEVEVDSMRVYDFCSRTRRIF

AT4G29090.1 Ribonuclease H-like superfamily protein

7.1e-50

30.8

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Query:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWL---PRDRLLK
        GG+ F+++  FN +LL KQ WR+LS P SL++ V + RYF     L A  G   SF+W+S+   +E+L +G R  VG+G  I I+   WL   P    L+
Subjt:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWL---PRDRLLK

Query:  IQSRPLR-----PDLRRVSDLISASG-QWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVAQQ-VDLLHDPSSSSLEGTISW
        +Q  P +       + +VSDLI  SG +W  D+++  F   E +LI  +  G  R  D   W Y   G +TVKSGY V  Q ++    P   S       
Subjt:  IQSRPLR-----PDLRRVSDLISASG-QWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVAQQ-VDLLHDPSSSSLEGTISW

Query:  WNRVWKLSIPSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSKVSHLWHSGGSSDIMALLRYLYD----NVPV
        + ++WK     KI+ FLW+   N LP    L  R +   + C+RC    E + H+++ C   R  W  S +        +  I   L ++++    N   
Subjt:  WNRVWKLSIPSKIRIFLWRLCLNKLPTRANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSKVSHLWHSGGSSDIMALLRYLYD----NVPV

Query:  AVFEEVVV-IIWGMWSARN-CILQGQSIAADDLLQWATTYLQSYQ---AAQQSGHRLPPIRSIV-RWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDS
            ++V  ++W +W  RN  + +G+   A ++L+ A   L+ ++    A+  G +    RS   RW PPP   VK NTDA ++        G V+R++ 
Subjt:  AVFEEVVV-IIWGMWSARN-CILQGQSIAADDLLQWATTYLQSYQ---AAQQSGHRLPPIRSIV-RWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDS

Query:  GAVLMAGIRPLHCCLNVDLAEGRAVVEGFWTAMNL
        G V   G R L    +V  AE  A+    W  ++L
Subjt:  GAVLMAGIRPLHCCLNVDLAEGRAVVEGFWTAMNL

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.9e-18

44.44

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Query:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWL
        GG+ FR+L  FNQ+LLAKQ +RI+  P +LLS +LR RYFP    +    G   S+ WRS++ G+ELL +GL   +G G   +++ D W+
Subjt:  GGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTTGGGGGGATGGACTTTCGGAATCTTGCGCTCTTCAACCAATCTCTTCTAGCGAAACAGTGTTGGCGTATTCTGAGTGACCCTACTTCTCTTCTCTCCACAGTGTT
GCGGGGGCGTTATTTTCCGTCTTGCGGCTTTTTGGGCGCCAGGGCGGGACCCAATTCATCTTTCATTTGGAGATCCCTTTTATGGGGAAAGGAGTTGTTGATGAAGGGAT
TACGGTGGAGAGTTGGGTCAGGTGCATCCATCCAGATCTATGACGATAATTGGCTCCCCCGGGACCGACTCCTCAAAATTCAATCTCGACCGCTACGGCCAGACCTGAGG
CGTGTTAGTGATTTGATCTCGGCTTCGGGTCAATGGGATCATGACCTTTTGAAGCAAAATTTTGACTATGAAGAGGCTCGCCTGATCTCTGCTATTCCATTGGGCCTTTC
TCGTGAGGCAGATCAGTTGATATGGCATTATGAGAAATTTGGGCGGTTCACAGTTAAAAGCGGATATCGTGTGGCACAGCAAGTAGATCTTCTTCATGACCCTTCCTCGT
CTTCTTTGGAGGGGACCATTTCATGGTGGAATCGTGTCTGGAAGTTGTCTATCCCATCGAAAATTCGGATCTTTTTATGGCGTTTGTGTCTAAACAAATTACCGACCCGG
GCGAATCTAATCCTTCGAGGTATGGATATCCCGAATTTGTGTGTCCGGTGTGGGTATTGGGGAGAGGATATTTTGCATGTCGTTTGGTATTGTAAGCATGTTCGGGGACT
TTGGTTTCGCTCAAAGGTGAGTCACTTATGGCATTCTGGTGGTTCTTCTGATATCATGGCTCTGCTGCGATATTTATATGACAATGTTCCTGTGGCCGTATTTGAGGAGG
TGGTGGTCATTATATGGGGCATGTGGTCGGCTCGAAATTGTATCCTACAGGGCCAATCGATAGCTGCCGATGATCTTCTTCAGTGGGCTACGACTTACCTTCAGTCATAT
CAGGCGGCCCAACAATCTGGTCATCGACTTCCTCCCATTCGTTCTATTGTGCGTTGGGTTCCTCCACCGTCGGGTATGGTCAAACTGAACACTGATGCAGCTTTTAGTCC
TTCCACGGGACTGGCGGCGGCGGGTATGGTCATTCGGGACGACAGCGGAGCGGTCTTAATGGCCGGAATACGGCCGTTGCACTGCTGCCTTAACGTGGATTTGGCGGAGG
GGCGTGCTGTGGTCGAGGGCTTTTGGACCGCTATGAATTTGGGCTTTAGTAAGTTGGAGGTGGAAGTTGACTCCATGCGTGTGTATGACTTCTGCAGCAGGACGAGGAGG
ATATTTCAGAGTTGGGTTGCCTTCTTGCGGCGCTGCCTCGTCGTGATTTTGCAGGAAATTTGGTGGCCTTTCGTTTCACTCTCCGGGAAGGAAATAGAGCAGCCCATGGT
TTGGCACAAATGGCATTGGAGCGCAAGGTGGACTACACATGGCTGGAAGATTGGCCGTCAGAACTTTTGGATATTCTTGTGTGTGACAGTTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MFGGMDFRNLALFNQSLLAKQCWRILSDPTSLLSTVLRGRYFPSCGFLGARAGPNSSFIWRSLLWGKELLMKGLRWRVGSGASIQIYDDNWLPRDRLLKIQSRPLRPDLR
RVSDLISASGQWDHDLLKQNFDYEEARLISAIPLGLSREADQLIWHYEKFGRFTVKSGYRVAQQVDLLHDPSSSSLEGTISWWNRVWKLSIPSKIRIFLWRLCLNKLPTR
ANLILRGMDIPNLCVRCGYWGEDILHVVWYCKHVRGLWFRSKVSHLWHSGGSSDIMALLRYLYDNVPVAVFEEVVVIIWGMWSARNCILQGQSIAADDLLQWATTYLQSY
QAAQQSGHRLPPIRSIVRWVPPPSGMVKLNTDAAFSPSTGLAAAGMVIRDDSGAVLMAGIRPLHCCLNVDLAEGRAVVEGFWTAMNLGFSKLEVEVDSMRVYDFCSRTRR
IFQSWVAFLRRCLVVILQEIWWPFVSLSGKEIEQPMVWHKWHWSARWTTHGWKIGRQNFWIFLCVTV

Lag0026039 (gene) of Sponge gourd (AG-4) v1 genome