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Lag0026052 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026052
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTranscription elongation factor B polypeptide 3 isoform X2
Genome locationchr10:28022357..28022968
RNA-Seq ExpressionLag0026052
SyntenyLag0026052
Gene Ontology termsGO:0008152 - metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054521.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa]1.4e-1237.34Show/hide
Query:  DRLKKVNIDWKV-FHLRKNATGRKVVMEERRGARVRRMDLDLGTFAWVRDCLMAVSKAKNPLGFWRRRRLNDAVIFFQVLSNSKGRYGLVSMEPYRGRKI
        DR+K+  +      H R +  GRK+ +EER G R R+++L+LGT AWVRDCL+A ++  NPL FWRRR L   V+      N  GR  L +     GR  
Subjt:  DRLKKVNIDWKV-FHLRKNATGRKVVMEERRGARVRRMDLDLGTFAWVRDCLMAVSKAKNPLGFWRRRRLNDAVIFFQVLSNSKGRYGLVSMEPYRGRKI

Query:  SIFIPEGSKSKGWGALEATMTVKEGPSRNYEEEVKNSE--DVDFAFDCNEAVIVERTS
        S    EGS   G    E    VK   S+   E     +  + D   DC   VI++ TS
Subjt:  SIFIPEGSKSKGWGALEATMTVKEGPSRNYEEEVKNSE--DVDFAFDCNEAVIVERTS

TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]1.9e-2537.63Show/hide
Query:  KVNIDWKVFHLRKNATGRKVVMEERRGARVRRMDLDLGTFAWVRDCLMAVSKAKNPLGFWRRRRLNDAVIFFQVLSNSKGRYGLVSMEPYRGRKISIFIP
        K+ ID K F +      RK+ +EER G    +++LD GT AWVRDCL+  + A N + FW +RRL  A+IFFQVL N KGR+ ++S+E ++ RK  IFIP
Subjt:  KVNIDWKVFHLRKNATGRKVVMEERRGARVRRMDLDLGTFAWVRDCLMAVSKAKNPLGFWRRRRLNDAVIFFQVLSNSKGRYGLVSMEPYRGRKISIFIP

Query:  EGSKSKGWGAL----------EATMTVKEG----PSRNYE-----------EEVKNSEDVDFAFDCNEAVIVERTSINSSWGEIRE
        EGS+  GW +L            T+  K G    P++N E              ++ +DV+FAF+    VI+++   +S WG +++
Subjt:  EGSKSKGWGAL----------EATMTVKEG----PSRNYE-----------EEVKNSEDVDFAFDCNEAVIVERTSINSSWGEIRE

TrEMBL top hitse value%identityAlignment
A0A0A0KB99 Uncharacterized protein1.6e-1454.67Show/hide
Query:  MDLDLGTFAWVRDCLMAVSKAKNPLGFWRRRRLNDAVIFFQVLSNSKGRYGLVSMEPYRGRKISIFIPEGSKSKG
        M+LD GT A VRDCL   + A NP  FW RR L  A+IFFQVL N++GR+ ++S+E ++G+K  IFI +GSK KG
Subjt:  MDLDLGTFAWVRDCLMAVSKAKNPLGFWRRRRLNDAVIFFQVLSNSKGRYGLVSMEPYRGRKISIFIPEGSKSKG

A0A0A0KGZ5 Uncharacterized protein5.9e-0947.44Show/hide
Query:  KVFHLRKNA-TGRKVVMEERRGARVRRMDLDLGTFAWVRDCLMAVSKAKNPLGFWRRRRLNDAVIFFQVLSNSKGRYG
        K  +L++NA  GRK+ +EE  G R  +++L+LG  AWV DCL+A ++  NPLGFW RR L    IFFQ  ++ +GR G
Subjt:  KVFHLRKNA-TGRKVVMEERRGARVRRMDLDLGTFAWVRDCLMAVSKAKNPLGFWRRRRLNDAVIFFQVLSNSKGRYG

A0A0A0LY03 Uncharacterized protein2.0e-1743.75Show/hide
Query:  TGRKVVMEERRGARVRRMDLDLGTFAWVRDCLMAVSKAKNPLGFWRRRRLNDAVIFFQVLSNSKGRYGLVSMEPYRGRKISIFIPEGSKSKGWGAL
        + RK+ +EER G +  ++DLDLGT  WV D L A + A   +G W+R++L+  +IFFQVL N   R+ ++S++ ++GRK  +FI EGS+  GW +L
Subjt:  TGRKVVMEERRGARVRRMDLDLGTFAWVRDCLMAVSKAKNPLGFWRRRRLNDAVIFFQVLSNSKGRYGLVSMEPYRGRKISIFIPEGSKSKGWGAL

A0A5A7ULV4 Transcription elongation factor B polypeptide 3 isoform X26.7e-1337.34Show/hide
Query:  DRLKKVNIDWKV-FHLRKNATGRKVVMEERRGARVRRMDLDLGTFAWVRDCLMAVSKAKNPLGFWRRRRLNDAVIFFQVLSNSKGRYGLVSMEPYRGRKI
        DR+K+  +      H R +  GRK+ +EER G R R+++L+LGT AWVRDCL+A ++  NPL FWRRR L   V+      N  GR  L +     GR  
Subjt:  DRLKKVNIDWKV-FHLRKNATGRKVVMEERRGARVRRMDLDLGTFAWVRDCLMAVSKAKNPLGFWRRRRLNDAVIFFQVLSNSKGRYGLVSMEPYRGRKI

Query:  SIFIPEGSKSKGWGALEATMTVKEGPSRNYEEEVKNSE--DVDFAFDCNEAVIVERTS
        S    EGS   G    E    VK   S+   E     +  + D   DC   VI++ TS
Subjt:  SIFIPEGSKSKGWGALEATMTVKEGPSRNYEEEVKNSE--DVDFAFDCNEAVIVERTS

A0A5D3CQQ0 Uncharacterized protein9.0e-2637.63Show/hide
Query:  KVNIDWKVFHLRKNATGRKVVMEERRGARVRRMDLDLGTFAWVRDCLMAVSKAKNPLGFWRRRRLNDAVIFFQVLSNSKGRYGLVSMEPYRGRKISIFIP
        K+ ID K F +      RK+ +EER G    +++LD GT AWVRDCL+  + A N + FW +RRL  A+IFFQVL N KGR+ ++S+E ++ RK  IFIP
Subjt:  KVNIDWKVFHLRKNATGRKVVMEERRGARVRRMDLDLGTFAWVRDCLMAVSKAKNPLGFWRRRRLNDAVIFFQVLSNSKGRYGLVSMEPYRGRKISIFIP

Query:  EGSKSKGWGAL----------EATMTVKEG----PSRNYE-----------EEVKNSEDVDFAFDCNEAVIVERTSINSSWGEIRE
        EGS+  GW +L            T+  K G    P++N E              ++ +DV+FAF+    VI+++   +S WG +++
Subjt:  EGSKSKGWGAL----------EATMTVKEG----PSRNYE-----------EEVKNSEDVDFAFDCNEAVIVERTSINSSWGEIRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGTCTAAAGAAGGTGAACATCGATTGGAAGGTGTTTCACCTTCGAAAGAATGCGACTGGGAGGAAAGTGGTGATGGAGGAAAGGAGGGGAGCGAGAGTGAGGCG
AATGGACCTAGATTTGGGGACGTTCGCCTGGGTTCGGGATTGCCTTATGGCAGTTTCAAAGGCCAAAAACCCATTAGGTTTCTGGCGAAGGAGAAGGCTGAACGATGCAG
TAATCTTCTTTCAGGTTCTGAGTAACTCGAAAGGAAGATATGGCCTGGTATCTATGGAACCCTATCGCGGGCGAAAGATCTCGATTTTCATACCAGAAGGTTCTAAGTCG
AAGGGATGGGGTGCTCTGGAAGCAACTATGACGGTGAAAGAGGGCCCGAGTCGGAACTATGAAGAGGAAGTGAAGAATTCGGAAGACGTCGACTTCGCGTTTGATTGCAA
CGAGGCGGTGATTGTAGAACGGACATCTATCAACTCGAGTTGGGGAGAAATCAGAGAAAATGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCGTCTAAAGAAGGTGAACATCGATTGGAAGGTGTTTCACCTTCGAAAGAATGCGACTGGGAGGAAAGTGGTGATGGAGGAAAGGAGGGGAGCGAGAGTGAGGCG
AATGGACCTAGATTTGGGGACGTTCGCCTGGGTTCGGGATTGCCTTATGGCAGTTTCAAAGGCCAAAAACCCATTAGGTTTCTGGCGAAGGAGAAGGCTGAACGATGCAG
TAATCTTCTTTCAGGTTCTGAGTAACTCGAAAGGAAGATATGGCCTGGTATCTATGGAACCCTATCGCGGGCGAAAGATCTCGATTTTCATACCAGAAGGTTCTAAGTCG
AAGGGATGGGGTGCTCTGGAAGCAACTATGACGGTGAAAGAGGGCCCGAGTCGGAACTATGAAGAGGAAGTGAAGAATTCGGAAGACGTCGACTTCGCGTTTGATTGCAA
CGAGGCGGTGATTGTAGAACGGACATCTATCAACTCGAGTTGGGGAGAAATCAGAGAAAATGCTTAA
Protein sequenceShow/hide protein sequence
MDRLKKVNIDWKVFHLRKNATGRKVVMEERRGARVRRMDLDLGTFAWVRDCLMAVSKAKNPLGFWRRRRLNDAVIFFQVLSNSKGRYGLVSMEPYRGRKISIFIPEGSKS
KGWGALEATMTVKEGPSRNYEEEVKNSEDVDFAFDCNEAVIVERTSINSSWGEIRENA