; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0026079 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026079
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr10:28800715..28801874
RNA-Seq ExpressionLag0026079
SyntenyLag0026079
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3480199.1 reverse transcriptase [Gossypium australe]9.7e-5640.45Show/hide
Query:  KAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN-------GPRHNR------------RATFVPG
        KAPG DG  A FYQ  W  IG+D    CLQ LN   ++S +NKT I LIP+V +P  +  FRPISLCN           NR            ++ FVPG
Subjt:  KAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN-------GPRHNR------------RATFVPG

Query:  RPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYL
        R I+DNV++ +E  H ++NKK GK+G +A+KLDMSKAYDRVEW+F+ ++  +MGF+  WV  I+KCV  VS+S ++NG   E F PSRG+RQGDPLSP+L
Subjt:  RPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYL

Query:  FL---------------------------------VSFKEEC-----------QSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQ
        FL                                 + F ++C            SLK + K YE+ SGQ +N DKS    S N ++ +   +SQIL V  
Subjt:  FL---------------------------------VSFKEEC-----------QSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQ

Query:  TKELINAVG
        + ++   +G
Subjt:  TKELINAVG

KAA3480252.1 reverse transcriptase [Gossypium australe]3.7e-5539.16Show/hide
Query:  KAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN-------GPRHNR------------RATFVPG
        KAPG DG  A FYQ  W  IG++ +  CLQ LN + D+S +NKT I LIP+V  P  +  FRPISLCN           NR            ++ F+PG
Subjt:  KAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN-------GPRHNR------------RATFVPG

Query:  RPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYL
        R I+DNV++ +E  H ++NKK GK+G++A+K+DMSKAYDRV+W+FI ++  KMGF  RWV  I+KCV  VS+SV++NG   E F P RG+RQGDPLSP+L
Subjt:  RPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYL

Query:  FL---------------------------------VSFKEEC-----------QSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQ
        FL                                 + F ++C            SLK + + Y   +GQ +N DKS    SKN  + +   + QIL +  
Subjt:  FL---------------------------------VSFKEEC-----------QSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQ

Query:  TKELINAVG
        + ++   +G
Subjt:  TKELINAVG

XP_012435028.1 PREDICTED: uncharacterized protein LOC105761689 [Gossypium raimondii]3.4e-5640.78Show/hide
Query:  KAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN---------------GPRHN----RRATFVPG
        KAPG DG  A FYQ  W  +GED    CLQ LNE  DL  +NKT I LIP+V +P ++  FRPISLCN               G  H      ++ FVPG
Subjt:  KAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN---------------GPRHN----RRATFVPG

Query:  RPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYL
        R ISDNV++ +E  H ++ K+ GK+G +A+KLDMSKAYDRVEW F+  +  K+GF   WV +I+KCV  VS+ V+ING+  +   PSRGIRQGDPLSP+L
Subjt:  RPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYL

Query:  FL---------------------------------VSFKEEC-----------QSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQ
        FL                                 + F ++C           QSLK + K YE  SGQ +N +KS+   S N  +     +S+ILGV +
Subjt:  FL---------------------------------VSFKEEC-----------QSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQ

Query:  TKELINAVG
          ++   +G
Subjt:  TKELINAVG

XP_012461392.1 PREDICTED: uncharacterized protein LOC105781396 [Gossypium raimondii]7.5e-5640.82Show/hide
Query:  KAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN-------GPRHNR------------RATFVPG
        KAPG DG  A FYQ  W  +G+D +  CLQILN + ++SP+N T I LIP+V +P  M  FRPISLCN           NR            ++ FVPG
Subjt:  KAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN-------GPRHNR------------RATFVPG

Query:  RPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYL
        R ISDNV++ +E  H ++ K+ GK+G +A+KLDMSKAYDRVEW  I E+  KMGF   WV  IMKCV  V++SV+ING   ++F P+RG+RQGDPLSP+L
Subjt:  RPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYL

Query:  FLVS---------------------------------FKEEC-----------QSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQ
        FL+                                  F ++C             +K +   ++  SGQ +N DKS    SKN  +ED  ++  +LGV +
Subjt:  FLVS---------------------------------FKEEC-----------QSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQ

Query:  TKE------LINAVGR
        T E      L N VGR
Subjt:  TKE------LINAVGR

XP_042952177.1 uncharacterized protein LOC122289261 [Carya illinoinensis]8.3e-5545.53Show/hide
Query:  APGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN-------GPRHNR------------RATFVPGR
        APG DG  A FYQ +WD +GE+  K  L ILN + ++S +N+T I LIP+VK+P+ + DF+PISLCN           NR            ++ F+ GR
Subjt:  APGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN-------GPRHNR------------RATFVPGR

Query:  PISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYLF
         I DNVI+ FE  H++  K KG++G++AIKLD+SKA+DRVEW F+ ++ +KMGF+ RW+   M+CV  VS+S LING PQ  F PSRGIRQGDPLSPYLF
Subjt:  PISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYLF

Query:  LVSFKEECQSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQTK
        ++         +++   YE+ASGQ +N  K+    S N R    +    IL + QT+
Subjt:  LVSFKEECQSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQTK

TrEMBL top hitse value%identityAlignment
A0A2N9ESZ1 Uncharacterized protein1.5e-5742.11Show/hide
Query:  MKSIISNKAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN-------GPRHNR------------
        +K +   KAPG DG   +FYQ YW  IG+D +   L  +N    L  +N T + LIP+VK+P Q+ ++RPISLCN           NR            
Subjt:  MKSIISNKAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN-------GPRHNR------------

Query:  RATFVPGRPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQG
        ++ FVPGR ++DNV+I FE  H + N++ GK G +A+KLDMSKAYDRVEW F+R++  KMGF ++WV+ +M+C+  VS+S+LING P+    PSRG+RQG
Subjt:  RATFVPGRPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQG

Query:  DPLSPYLFLVSFKE-----------ECQSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQTKELINAVGRL
        DP+SPYLFL+  ++           ECQ L+ + ++YEKASGQ +N  K+    S+N  +   + I   LGV   ++    +G L
Subjt:  DPLSPYLFLVSFKE-----------ECQSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQTKELINAVGRL

A0A2N9J6K4 Reverse transcriptase domain-containing protein2.3e-5544.93Show/hide
Query:  NKAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN-------GPRHNRRAT------------FVP
        +KAPG DG  A F+Q +W  +G D     L  LN    L  LN T IALIP+VK P+ M  FRPISLCN           NR  T            FVP
Subjt:  NKAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN-------GPRHNRRAT------------FVP

Query:  GRPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPY
        GR ISDN++I FE  H ++NK+ GK   +A+KLDMSKAYDRVEW ++++M  K+GF+ RWV  IM+CV  VS+S+L+NG P+   KPSRG+RQGDPLSPY
Subjt:  GRPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPY

Query:  LFLV----------SFKEECQSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQTKELINAVG
        LFL+          +   ECQ+L+ +   YE ASGQ IN  K+    S+N        I    G + T +    +G
Subjt:  LFLV----------SFKEECQSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQTKELINAVG

A0A5B6WEP5 Reverse transcriptase4.7e-5640.45Show/hide
Query:  KAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN-------GPRHNR------------RATFVPG
        KAPG DG  A FYQ  W  IG+D    CLQ LN   ++S +NKT I LIP+V +P  +  FRPISLCN           NR            ++ FVPG
Subjt:  KAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN-------GPRHNR------------RATFVPG

Query:  RPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYL
        R I+DNV++ +E  H ++NKK GK+G +A+KLDMSKAYDRVEW+F+ ++  +MGF+  WV  I+KCV  VS+S ++NG   E F PSRG+RQGDPLSP+L
Subjt:  RPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYL

Query:  FL---------------------------------VSFKEEC-----------QSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQ
        FL                                 + F ++C            SLK + K YE+ SGQ +N DKS    S N ++ +   +SQIL V  
Subjt:  FL---------------------------------VSFKEEC-----------QSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQ

Query:  TKELINAVG
        + ++   +G
Subjt:  TKELINAVG

A0A5B6WHA4 Reverse transcriptase1.8e-5539.16Show/hide
Query:  KAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN-------GPRHNR------------RATFVPG
        KAPG DG  A FYQ  W  IG++ +  CLQ LN + D+S +NKT I LIP+V  P  +  FRPISLCN           NR            ++ F+PG
Subjt:  KAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN-------GPRHNR------------RATFVPG

Query:  RPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYL
        R I+DNV++ +E  H ++NKK GK+G++A+K+DMSKAYDRV+W+FI ++  KMGF  RWV  I+KCV  VS+SV++NG   E F P RG+RQGDPLSP+L
Subjt:  RPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYL

Query:  FL---------------------------------VSFKEEC-----------QSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQ
        FL                                 + F ++C            SLK + + Y   +GQ +N DKS    SKN  + +   + QIL +  
Subjt:  FL---------------------------------VSFKEEC-----------QSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQ

Query:  TKELINAVG
        + ++   +G
Subjt:  TKELINAVG

A0A7N2LIH6 Uncharacterized protein1.1e-5541.08Show/hide
Query:  KAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN-------------------GPRHNRRATFVPG
        KAPG DG    FYQ YWD +G       LQ LN       +NKT I LIP+ K+P+++ +FRPISLCN                   G     ++ FVPG
Subjt:  KAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCN-------------------GPRHNRRATFVPG

Query:  RPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYL
        R I+DNVI+ FE  H+I  ++KGKEG +AIKLDMSKAYDRVEW+++  M  KMGF +RW++ IM CV  VSFSVLING P+  F PSRG+RQGDP+SPYL
Subjt:  RPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYL

Query:  FLV--------------------------------------------SFKEECQSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILG
        FL+                                            +  +EC+ +  V + YE+ SGQ +N DK+    S+N + E  +    I G
Subjt:  FLV--------------------------------------------SFKEECQSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILG

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein9.3e-1725.17Show/hide
Query:  MKSIISNKAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQV-KDPKQMKDFRPISLCNGPR-------------------HN
        + S+ + K+PG DG  A FYQ Y + +    +K+   I  E    +   +  I LIP+  +D  + ++FRPISL N                      H+
Subjt:  MKSIISNKAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQV-KDPKQMKDFRPISLCNGPR-------------------HN

Query:  RRATFVPGRPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQ
         +  F+PG     N+         I N+ K K  HV I +D  KA+D+++  F+ +  +K+G    ++  I    +  + ++++NG   E F    G RQ
Subjt:  RRATFVPGRPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQ

Query:  GDPLSPYLFLVSF-------------------KEE--------------------CQSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQI
        G PLSP LF +                     KEE                     Q+L  +  ++ K SG  IN+ KS   +  N R+ ++Q + ++
Subjt:  GDPLSPYLFLVSF-------------------KEE--------------------CQSLKMVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQI

P11369 LINE-1 retrotransposable element ORF2 protein1.3e-1529.67Show/hide
Query:  MKSIISNKAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQ-VKDPKQMKDFRPISLCN-------------------GPRHN
        + S+ + K+PG DG  A FYQ + + +     K+  +I  E    +   +  I LIP+  KDP ++++FRPISL N                      H 
Subjt:  MKSIISNKAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQ-VKDPKQMKDFRPISLCN-------------------GPRHN

Query:  RRATFVPGRPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQ
         +  F+PG     N+       H I NK K K  H+ I LD  KA+D+++  F+ ++  + G    ++  I         ++ +NG   E      G RQ
Subjt:  RRATFVPGRPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQ

Query:  GDPLSPYLF
        G PLSPYLF
Subjt:  GDPLSPYLF

P14381 Transposon TX1 uncharacterized 149 kDa protein6.6e-1524.91Show/hide
Query:  NKAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCNGPR-------------------HNRRATFVP
        NK+PG DG    F+Q +WDT+G D  +V  +   +        + V++L+P+  D + +K++RP+SL +                      H  ++  VP
Subjt:  NKAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCNGPR-------------------HNRRATFVP

Query:  GRPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPY
        GR I DNV +  +  H  R           + LD  KA+DRV+  ++        F  ++V  +          V IN S        RG+RQG PLS  
Subjt:  GRPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPY

Query:  LFLVSFKEECQSLK-----MVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQTKEL--INAVGRLEGANSV
        L+ ++ +     L+     +V K  +     +   D  + +    V  E AQE  ++     +  +    + G LEG+  V
Subjt:  LFLVSFKEECQSLK-----MVFKSYEKASGQAINLDKSMFMVSKNVRKEDAQEISQILGVNQTKEL--INAVGRLEGANSV

P16423 Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM4.6e-0830.46Show/hide
Query:  IPQVKDPKQMKDFRPISLCN----------GPRHN-------RRATFVPGRPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMP
        IP+    K+ +DFRPIS+ +            R N       R+  F+P    +DN  I       +R+  K         LD+SKA+D +  + I +  
Subjt:  IPQVKDPKQMKDFRPISLCN----------GPRHN-------RRATFVPGRPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMP

Query:  SKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYLF
           G    +V  +    E    S+  +G   EEF P+RG++QGDPLSP LF
Subjt:  SKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYLF

Q03278 Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment)1.4e-0428.3Show/hide
Query:  LIPQVKDPKQMKDFRPISLC-----------------NGPRHNRRATFVPGRPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFI---
        LIP+         FRP+S+                  +G    R+  F+    +++N  +        R K KG   ++AI LD+ KA+D VE   I   
Subjt:  LIPQVKDPKQMKDFRPISLC-----------------NGPRHNRRATFVPGRPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFI---

Query:  ---REMPSKMGFSNRWV-TNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYLF
           +++P +M     WV  N    +E+V        +     +P+RG+RQGDPLSP LF
Subjt:  ---REMPSKMGFSNRWV-TNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYLF

Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases2.7e-1137.5Show/hide
Query:  RATFVPGRPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMK
        +A+F+PGR  +DN++   E  H++R +KKG +G + +KLD+ KAYDR+ W ++ +     GF   W+  I +
Subjt:  RATFVPGRPISDNVIIGFECTHAIRNKKKGKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMK

ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)5.8e-0668.97Show/hide
Query:  LINGSPQEEFKPSRGIRQGDPLSPYLFLV
        +ING+PQ    PSRG+RQGDPLSPYLF++
Subjt:  LINGSPQEEFKPSRGIRQGDPLSPYLFLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAGCATAATCTCGAATAAAGCCCCTGGTAGAGATGGAGCCCTTGCTTCTTTTTACCAAGGATATTGGGATACAATTGGGGAGGATACTATCAAAGTTTGCCTTCA
AATCCTGAATGAGGATGCTGATTTAAGTCCATTAAACAAGACGGTCATTGCTTTAATCCCTCAAGTTAAGGACCCCAAACAAATGAAAGACTTCAGGCCGATTAGTTTAT
GCAATGGTCCTAGACACAATCGGAGAGCTACTTTTGTCCCGGGAAGACCAATCTCTGATAATGTTATTATAGGCTTTGAATGTACCCATGCTATAAGAAACAAGAAAAAA
GGGAAAGAGGGGCATGTAGCCATCAAGCTGGATATGAGCAAAGCTTACGATAGAGTAGAATGGAGTTTCATACGAGAAATGCCTTCCAAAATGGGGTTCAGCAATAGATG
GGTGACCAACATCATGAAATGTGTGGAAATAGTATCATTCTCGGTCCTAATCAATGGATCGCCCCAGGAGGAATTCAAGCCATCCAGAGGAATCAGACAAGGGGACCCAC
TATCTCCGTACCTCTTTCTGGTGTCGTTTAAGGAGGAATGCCAATCCCTGAAGATGGTGTTTAAGAGCTACGAGAAAGCTTCGGGGCAAGCCATAAACCTGGATAAGTCC
ATGTTTATGGTGAGTAAGAACGTGAGAAAGGAAGATGCTCAAGAGATTAGTCAAATCCTTGGAGTGAACCAAACCAAAGAGCTGATTAATGCTGTTGGGCGACTAGAGGG
AGCAAATTCTGTGCTGCAGCAAAACTGGGAACAGAATTGCCACATCACAGCTCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAAGCATAATCTCGAATAAAGCCCCTGGTAGAGATGGAGCCCTTGCTTCTTTTTACCAAGGATATTGGGATACAATTGGGGAGGATACTATCAAAGTTTGCCTTCA
AATCCTGAATGAGGATGCTGATTTAAGTCCATTAAACAAGACGGTCATTGCTTTAATCCCTCAAGTTAAGGACCCCAAACAAATGAAAGACTTCAGGCCGATTAGTTTAT
GCAATGGTCCTAGACACAATCGGAGAGCTACTTTTGTCCCGGGAAGACCAATCTCTGATAATGTTATTATAGGCTTTGAATGTACCCATGCTATAAGAAACAAGAAAAAA
GGGAAAGAGGGGCATGTAGCCATCAAGCTGGATATGAGCAAAGCTTACGATAGAGTAGAATGGAGTTTCATACGAGAAATGCCTTCCAAAATGGGGTTCAGCAATAGATG
GGTGACCAACATCATGAAATGTGTGGAAATAGTATCATTCTCGGTCCTAATCAATGGATCGCCCCAGGAGGAATTCAAGCCATCCAGAGGAATCAGACAAGGGGACCCAC
TATCTCCGTACCTCTTTCTGGTGTCGTTTAAGGAGGAATGCCAATCCCTGAAGATGGTGTTTAAGAGCTACGAGAAAGCTTCGGGGCAAGCCATAAACCTGGATAAGTCC
ATGTTTATGGTGAGTAAGAACGTGAGAAAGGAAGATGCTCAAGAGATTAGTCAAATCCTTGGAGTGAACCAAACCAAAGAGCTGATTAATGCTGTTGGGCGACTAGAGGG
AGCAAATTCTGTGCTGCAGCAAAACTGGGAACAGAATTGCCACATCACAGCTCGTTAG
Protein sequenceShow/hide protein sequence
MKSIISNKAPGRDGALASFYQGYWDTIGEDTIKVCLQILNEDADLSPLNKTVIALIPQVKDPKQMKDFRPISLCNGPRHNRRATFVPGRPISDNVIIGFECTHAIRNKKK
GKEGHVAIKLDMSKAYDRVEWSFIREMPSKMGFSNRWVTNIMKCVEIVSFSVLINGSPQEEFKPSRGIRQGDPLSPYLFLVSFKEECQSLKMVFKSYEKASGQAINLDKS
MFMVSKNVRKEDAQEISQILGVNQTKELINAVGRLEGANSVLQQNWEQNCHITAR